Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC38.53■■■■□ 3.76
COL17A1Q9UMD9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC38.53■■■■□ 3.76
COL17A1Q9UMD9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC38.52■■■■□ 3.76
COL17A1Q9UMD9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC38.51■■■■□ 3.76
COL17A1Q9UMD9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
COL17A1Q9UMD9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC38.5■■■■□ 3.75
COL17A1Q9UMD9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC38.5■■■■□ 3.75
COL17A1Q9UMD9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC38.5■■■■□ 3.75
COL17A1Q9UMD9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 AL359258.2-201ENST00000564063 1566 ntBASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC38.49■■■■□ 3.75
COL17A1Q9UMD9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC38.48■■■■□ 3.75
COL17A1Q9UMD9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC38.48■■■■□ 3.75
COL17A1Q9UMD9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC38.47■■■■□ 3.75
COL17A1Q9UMD9 RALB-208ENST00000631312 311 ntTSL 5 BASIC38.47■■■■□ 3.75
COL17A1Q9UMD9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC38.47■■■■□ 3.75
COL17A1Q9UMD9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
COL17A1Q9UMD9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
COL17A1Q9UMD9 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC38.46■■■■□ 3.75
COL17A1Q9UMD9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC38.46■■■■□ 3.75
COL17A1Q9UMD9 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
COL17A1Q9UMD9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC38.45■■■■□ 3.75
COL17A1Q9UMD9 Z92544.1-202ENST00000571933 1220 ntBASIC38.45■■■■□ 3.75
COL17A1Q9UMD9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC38.44■■■■□ 3.74
COL17A1Q9UMD9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC38.44■■■■□ 3.74
COL17A1Q9UMD9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
COL17A1Q9UMD9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
COL17A1Q9UMD9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
COL17A1Q9UMD9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
COL17A1Q9UMD9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC38.43■■■■□ 3.74
COL17A1Q9UMD9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC38.43■■■■□ 3.74
COL17A1Q9UMD9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC38.42■■■■□ 3.74
COL17A1Q9UMD9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC38.42■■■■□ 3.74
COL17A1Q9UMD9 AL139246.5-201ENST00000606645 996 ntBASIC38.42■■■■□ 3.74
COL17A1Q9UMD9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
COL17A1Q9UMD9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC38.42■■■■□ 3.74
COL17A1Q9UMD9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC38.41■■■■□ 3.74
COL17A1Q9UMD9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
COL17A1Q9UMD9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC38.4■■■■□ 3.74
COL17A1Q9UMD9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC38.4■■■■□ 3.74
COL17A1Q9UMD9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.74
COL17A1Q9UMD9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC38.38■■■■□ 3.73
COL17A1Q9UMD9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
COL17A1Q9UMD9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC38.37■■■■□ 3.73
COL17A1Q9UMD9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC38.37■■■■□ 3.73
COL17A1Q9UMD9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
COL17A1Q9UMD9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC38.36■■■■□ 3.73
COL17A1Q9UMD9 AC018755.3-202ENST00000596210 929 ntBASIC38.36■■■■□ 3.73
COL17A1Q9UMD9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
COL17A1Q9UMD9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC38.35■■■■□ 3.73
COL17A1Q9UMD9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
COL17A1Q9UMD9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
COL17A1Q9UMD9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC38.35■■■■□ 3.73
COL17A1Q9UMD9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC38.34■■■■□ 3.73
COL17A1Q9UMD9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC38.34■■■■□ 3.73
COL17A1Q9UMD9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC38.33■■■■□ 3.73
COL17A1Q9UMD9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC38.33■■■■□ 3.73
COL17A1Q9UMD9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC38.32■■■■□ 3.72
COL17A1Q9UMD9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC38.32■■■■□ 3.72
COL17A1Q9UMD9 UNC93B8-201ENST00000511903 705 ntBASIC38.32■■■■□ 3.72
COL17A1Q9UMD9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC38.32■■■■□ 3.72
COL17A1Q9UMD9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC38.32■■■■□ 3.72
COL17A1Q9UMD9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC38.31■■■■□ 3.72
COL17A1Q9UMD9 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
COL17A1Q9UMD9 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
COL17A1Q9UMD9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
COL17A1Q9UMD9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC38.29■■■■□ 3.72
COL17A1Q9UMD9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC38.29■■■■□ 3.72
COL17A1Q9UMD9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC38.28■■■■□ 3.72
COL17A1Q9UMD9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC38.28■■■■□ 3.72
COL17A1Q9UMD9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC38.28■■■■□ 3.72
COL17A1Q9UMD9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC38.28■■■■□ 3.72
COL17A1Q9UMD9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
COL17A1Q9UMD9 MIR3960-201ENST00000583311 91 ntBASIC38.27■■■■□ 3.72
COL17A1Q9UMD9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC38.27■■■■□ 3.72
COL17A1Q9UMD9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
COL17A1Q9UMD9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
COL17A1Q9UMD9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC38.26■■■■□ 3.72
COL17A1Q9UMD9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC38.26■■■■□ 3.72
COL17A1Q9UMD9 AC019171.1-201ENST00000601251 1056 ntBASIC38.26■■■■□ 3.72
COL17A1Q9UMD9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.71
COL17A1Q9UMD9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
COL17A1Q9UMD9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC38.25■■■■□ 3.71
COL17A1Q9UMD9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 LONRF2P2-201ENST00000439212 571 ntBASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 AC092666.2-201ENST00000613287 246 ntBASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC38.22■■■■□ 3.71
COL17A1Q9UMD9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC38.21■■■■□ 3.71
COL17A1Q9UMD9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC38.21■■■■□ 3.71
COL17A1Q9UMD9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC38.21■■■■□ 3.71
COL17A1Q9UMD9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC38.21■■■■□ 3.71
COL17A1Q9UMD9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms