Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.17■□□□□ 0.34
ALMS1Q8TCU4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.17■□□□□ 0.34
ALMS1Q8TCU4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.17■□□□□ 0.34
ALMS1Q8TCU4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
ALMS1Q8TCU4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.17■□□□□ 0.34
ALMS1Q8TCU4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
ALMS1Q8TCU4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ALMS1Q8TCU4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
ALMS1Q8TCU4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 YBX1P4-201ENST00000392794 808 ntBASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.14■□□□□ 0.33
ALMS1Q8TCU4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 AC239859.2-201ENST00000444165 318 ntBASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 Z92544.1-202ENST00000571933 1220 ntBASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.13■□□□□ 0.33
ALMS1Q8TCU4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC17.12■□□□□ 0.33
ALMS1Q8TCU4 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.12■□□□□ 0.33
ALMS1Q8TCU4 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ALMS1Q8TCU4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.12■□□□□ 0.33
ALMS1Q8TCU4 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.12■□□□□ 0.33
ALMS1Q8TCU4 HYI-210ENST00000486909 905 ntTSL 5 BASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 MIR3960-201ENST00000583311 91 ntBASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ALMS1Q8TCU4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 AC018755.3-202ENST00000596210 929 ntBASIC17.1■□□□□ 0.33
ALMS1Q8TCU4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 MIR638-201ENST00000385237 100 ntBASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.09■□□□□ 0.33
ALMS1Q8TCU4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ALMS1Q8TCU4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ALMS1Q8TCU4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.08■□□□□ 0.33
ALMS1Q8TCU4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ALMS1Q8TCU4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ALMS1Q8TCU4 AC008406.3-201ENST00000620001 1374 ntBASIC17.08■□□□□ 0.32
ALMS1Q8TCU4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ALMS1Q8TCU4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ALMS1Q8TCU4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ALMS1Q8TCU4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC17.07■□□□□ 0.32
ALMS1Q8TCU4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ALMS1Q8TCU4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.05■□□□□ 0.32
ALMS1Q8TCU4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ALMS1Q8TCU4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ALMS1Q8TCU4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
ALMS1Q8TCU4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC17.03■□□□□ 0.32
ALMS1Q8TCU4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
ALMS1Q8TCU4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ALMS1Q8TCU4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.03■□□□□ 0.32
ALMS1Q8TCU4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC17.02■□□□□ 0.32
ALMS1Q8TCU4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
ALMS1Q8TCU4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ALMS1Q8TCU4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC17.02■□□□□ 0.31
ALMS1Q8TCU4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ALMS1Q8TCU4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.01■□□□□ 0.31
ALMS1Q8TCU4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17■□□□□ 0.31
ALMS1Q8TCU4 RALB-208ENST00000631312 311 ntTSL 5 BASIC17■□□□□ 0.31
ALMS1Q8TCU4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ALMS1Q8TCU4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms