Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SMC1BQ8NDV3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SMC1BQ8NDV3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.05■■■□□ 2.4
SMC1BQ8NDV3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.04■■■□□ 2.4
SMC1BQ8NDV3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMC1BQ8NDV3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.03■■■□□ 2.4
SMC1BQ8NDV3 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
SMC1BQ8NDV3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.03■■■□□ 2.4
SMC1BQ8NDV3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SMC1BQ8NDV3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.02■■■□□ 2.4
SMC1BQ8NDV3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.02■■■□□ 2.4
SMC1BQ8NDV3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
SMC1BQ8NDV3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SMC1BQ8NDV3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
SMC1BQ8NDV3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.01■■■□□ 2.39
SMC1BQ8NDV3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.01■■■□□ 2.39
SMC1BQ8NDV3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30■■■□□ 2.39
SMC1BQ8NDV3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30■■■□□ 2.39
SMC1BQ8NDV3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SMC1BQ8NDV3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 MIR3960-201ENST00000583311 91 ntBASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SMC1BQ8NDV3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.98■■■□□ 2.39
SMC1BQ8NDV3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SMC1BQ8NDV3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SMC1BQ8NDV3 LONRF2P2-201ENST00000439212 571 ntBASIC29.98■■■□□ 2.39
SMC1BQ8NDV3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.97■■■□□ 2.39
SMC1BQ8NDV3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.97■■■□□ 2.39
SMC1BQ8NDV3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC29.97■■■□□ 2.39
SMC1BQ8NDV3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC29.97■■■□□ 2.39
SMC1BQ8NDV3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
SMC1BQ8NDV3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC29.96■■■□□ 2.39
SMC1BQ8NDV3 KRT125P-201ENST00000546827 989 ntBASIC29.96■■■□□ 2.39
SMC1BQ8NDV3 AC019171.1-201ENST00000601251 1056 ntBASIC29.96■■■□□ 2.39
SMC1BQ8NDV3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SMC1BQ8NDV3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SMC1BQ8NDV3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SMC1BQ8NDV3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC29.94■■■□□ 2.38
SMC1BQ8NDV3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC29.94■■■□□ 2.38
SMC1BQ8NDV3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC1BQ8NDV3 KRT16P3-201ENST00000439127 1283 ntBASIC29.93■■■□□ 2.38
SMC1BQ8NDV3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC29.93■■■□□ 2.38
SMC1BQ8NDV3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
SMC1BQ8NDV3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMC1BQ8NDV3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC29.92■■■□□ 2.38
SMC1BQ8NDV3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
SMC1BQ8NDV3 MIR4787-201ENST00000607364 84 ntBASIC29.92■■■□□ 2.38
SMC1BQ8NDV3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 UNC93B8-201ENST00000511903 705 ntBASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMC1BQ8NDV3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC29.9■■■□□ 2.38
SMC1BQ8NDV3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC29.9■■■□□ 2.38
SMC1BQ8NDV3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
SMC1BQ8NDV3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC29.9■■■□□ 2.38
SMC1BQ8NDV3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMC1BQ8NDV3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.89■■■□□ 2.38
SMC1BQ8NDV3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
SMC1BQ8NDV3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.89■■■□□ 2.38
SMC1BQ8NDV3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.38
SMC1BQ8NDV3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.38
SMC1BQ8NDV3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC1BQ8NDV3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC1BQ8NDV3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
SMC1BQ8NDV3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SMC1BQ8NDV3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
SMC1BQ8NDV3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
SMC1BQ8NDV3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC29.86■■■□□ 2.37
SMC1BQ8NDV3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SMC1BQ8NDV3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 AC005837.3-201ENST00000612163 286 ntBASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SMC1BQ8NDV3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
SMC1BQ8NDV3 BX664725.1-201ENST00000438252 379 ntBASIC29.84■■■□□ 2.37
SMC1BQ8NDV3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC29.84■■■□□ 2.37
SMC1BQ8NDV3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SMC1BQ8NDV3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SMC1BQ8NDV3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMC1BQ8NDV3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMC1BQ8NDV3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMC1BQ8NDV3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC29.83■■■□□ 2.37
SMC1BQ8NDV3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
SMC1BQ8NDV3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC29.81■■■□□ 2.36
SMC1BQ8NDV3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC29.81■■■□□ 2.36
SMC1BQ8NDV3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms