Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CLRN1P58418 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN1P58418 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
CLRN1P58418 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CLRN1P58418 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.02■■□□□ 1.12
CLRN1P58418 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
CLRN1P58418 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CLRN1P58418 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CLRN1P58418 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CLRN1P58418 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.01■■□□□ 1.11
CLRN1P58418 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.01■■□□□ 1.11
CLRN1P58418 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CLRN1P58418 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.01■■□□□ 1.11
CLRN1P58418 AP004609.3-201ENST00000610705 1884 ntBASIC22■■□□□ 1.11
CLRN1P58418 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22■■□□□ 1.11
CLRN1P58418 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22■■□□□ 1.11
CLRN1P58418 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLRN1P58418 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22■■□□□ 1.11
CLRN1P58418 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLRN1P58418 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.99■■□□□ 1.11
CLRN1P58418 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLRN1P58418 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.99■■□□□ 1.11
CLRN1P58418 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLRN1P58418 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CLRN1P58418 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CLRN1P58418 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN1P58418 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.98■■□□□ 1.11
CLRN1P58418 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN1P58418 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
CLRN1P58418 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CLRN1P58418 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN1P58418 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CLRN1P58418 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN1P58418 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.98■■□□□ 1.11
CLRN1P58418 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLRN1P58418 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLRN1P58418 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLRN1P58418 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLRN1P58418 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.96■■□□□ 1.11
CLRN1P58418 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.96■■□□□ 1.11
CLRN1P58418 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CLRN1P58418 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLRN1P58418 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
CLRN1P58418 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLRN1P58418 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLRN1P58418 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.95■■□□□ 1.1
CLRN1P58418 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLRN1P58418 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CLRN1P58418 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLRN1P58418 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
CLRN1P58418 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CLRN1P58418 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.94■■□□□ 1.1
CLRN1P58418 AC142472.1-201ENST00000612013 1741 ntBASIC21.94■■□□□ 1.1
CLRN1P58418 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.94■■□□□ 1.1
CLRN1P58418 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLRN1P58418 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLRN1P58418 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CLRN1P58418 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.93■■□□□ 1.1
CLRN1P58418 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.93■■□□□ 1.1
CLRN1P58418 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CLRN1P58418 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.92■■□□□ 1.1
CLRN1P58418 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.92■■□□□ 1.1
CLRN1P58418 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.92■■□□□ 1.1
CLRN1P58418 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.92■■□□□ 1.1
CLRN1P58418 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLRN1P58418 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.91■■□□□ 1.1
CLRN1P58418 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CLRN1P58418 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLRN1P58418 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLRN1P58418 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLRN1P58418 AL359258.2-201ENST00000564063 1566 ntBASIC21.91■■□□□ 1.1
CLRN1P58418 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CLRN1P58418 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CLRN1P58418 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.9■■□□□ 1.1
CLRN1P58418 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.9■■□□□ 1.1
CLRN1P58418 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CLRN1P58418 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CLRN1P58418 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CLRN1P58418 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CLRN1P58418 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN1P58418 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN1P58418 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN1P58418 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
CLRN1P58418 AC126177.7-201ENST00000547904 679 ntBASIC21.88■■□□□ 1.09
CLRN1P58418 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.88■■□□□ 1.09
CLRN1P58418 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CLRN1P58418 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.88■■□□□ 1.09
CLRN1P58418 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.88■■□□□ 1.09
CLRN1P58418 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN1P58418 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN1P58418 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN1P58418 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN1P58418 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms