Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RFC3P40938 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC3P40938 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.62■■□□□ 1.21
RFC3P40938 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.62■■□□□ 1.21
RFC3P40938 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.61■■□□□ 1.21
RFC3P40938 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RFC3P40938 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RFC3P40938 DRD5P2-201ENST00000421395 2012 ntBASIC22.61■■□□□ 1.21
RFC3P40938 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.61■■□□□ 1.21
RFC3P40938 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RFC3P40938 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
RFC3P40938 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RFC3P40938 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RFC3P40938 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
RFC3P40938 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.59■■□□□ 1.21
RFC3P40938 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.59■■□□□ 1.21
RFC3P40938 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
RFC3P40938 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
RFC3P40938 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RFC3P40938 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RFC3P40938 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
RFC3P40938 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
RFC3P40938 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.58■■□□□ 1.21
RFC3P40938 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RFC3P40938 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.57■■□□□ 1.2
RFC3P40938 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RFC3P40938 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
RFC3P40938 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.57■■□□□ 1.2
RFC3P40938 AC009831.1-201ENST00000580420 1582 ntBASIC22.56■■□□□ 1.2
RFC3P40938 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RFC3P40938 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.56■■□□□ 1.2
RFC3P40938 AC133552.2-201ENST00000619106 1032 ntBASIC22.56■■□□□ 1.2
RFC3P40938 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
RFC3P40938 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.56■■□□□ 1.2
RFC3P40938 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.55■■□□□ 1.2
RFC3P40938 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
RFC3P40938 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.55■■□□□ 1.2
RFC3P40938 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 AC004987.1-201ENST00000428627 508 ntBASIC22.55■■□□□ 1.2
RFC3P40938 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RFC3P40938 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC3P40938 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RFC3P40938 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RFC3P40938 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.54■■□□□ 1.2
RFC3P40938 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.54■■□□□ 1.2
RFC3P40938 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC3P40938 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC3P40938 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RFC3P40938 AL592293.1-201ENST00000502889 1188 ntBASIC22.53■■□□□ 1.2
RFC3P40938 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
RFC3P40938 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RFC3P40938 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
RFC3P40938 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RFC3P40938 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
RFC3P40938 TSPY13P-201ENST00000338964 914 ntBASIC22.52■■□□□ 1.2
RFC3P40938 ATP5G2P3-201ENST00000429083 425 ntBASIC22.52■■□□□ 1.2
RFC3P40938 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
RFC3P40938 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.52■■□□□ 1.2
RFC3P40938 AC025884.2-201ENST00000553429 711 ntBASIC22.52■■□□□ 1.2
RFC3P40938 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.52■■□□□ 1.2
RFC3P40938 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RFC3P40938 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
RFC3P40938 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RFC3P40938 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.51■■□□□ 1.19
RFC3P40938 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RFC3P40938 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RFC3P40938 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RFC3P40938 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RFC3P40938 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.5■■□□□ 1.19
RFC3P40938 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
RFC3P40938 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RFC3P40938 WHAMMP3-201ENST00000611636 1609 ntBASIC22.49■■□□□ 1.19
RFC3P40938 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.49■■□□□ 1.19
RFC3P40938 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.49■■□□□ 1.19
RFC3P40938 DUX4L18-201ENST00000553347 1267 ntBASIC22.49■■□□□ 1.19
RFC3P40938 AC093536.1-201ENST00000569153 554 ntBASIC22.49■■□□□ 1.19
RFC3P40938 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RFC3P40938 AC026202.3-201ENST00000600805 1127 ntBASIC22.49■■□□□ 1.19
RFC3P40938 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
RFC3P40938 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
RFC3P40938 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.48■■□□□ 1.19
RFC3P40938 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RFC3P40938 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.48■■□□□ 1.19
RFC3P40938 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RFC3P40938 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
RFC3P40938 RP9P-202ENST00000450133 1212 ntBASIC22.48■■□□□ 1.19
RFC3P40938 AC129492.7-201ENST00000622992 756 ntBASIC22.48■■□□□ 1.19
RFC3P40938 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RFC3P40938 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.48■■□□□ 1.19
RFC3P40938 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
RFC3P40938 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RFC3P40938 AL359504.2-201ENST00000605506 1601 ntBASIC22.47■■□□□ 1.19
RFC3P40938 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
RFC3P40938 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RFC3P40938 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms