Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.83■■■□□ 2.21
CDKL5O76039 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CDKL5O76039 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.82■■■□□ 2.2
CDKL5O76039 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CDKL5O76039 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDKL5O76039 AP004609.3-201ENST00000610705 1884 ntBASIC28.81■■■□□ 2.2
CDKL5O76039 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CDKL5O76039 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDKL5O76039 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.81■■■□□ 2.2
CDKL5O76039 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDKL5O76039 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.81■■■□□ 2.2
CDKL5O76039 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.81■■■□□ 2.2
CDKL5O76039 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
CDKL5O76039 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CDKL5O76039 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CDKL5O76039 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CDKL5O76039 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CDKL5O76039 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
CDKL5O76039 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CDKL5O76039 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
CDKL5O76039 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CDKL5O76039 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.79■■■□□ 2.2
CDKL5O76039 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CDKL5O76039 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
CDKL5O76039 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CDKL5O76039 AC142472.1-201ENST00000612013 1741 ntBASIC28.77■■■□□ 2.2
CDKL5O76039 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CDKL5O76039 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.77■■■□□ 2.2
CDKL5O76039 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CDKL5O76039 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CDKL5O76039 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.76■■■□□ 2.2
CDKL5O76039 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.76■■■□□ 2.2
CDKL5O76039 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CDKL5O76039 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
CDKL5O76039 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CDKL5O76039 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.76■■■□□ 2.19
CDKL5O76039 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
CDKL5O76039 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CDKL5O76039 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CDKL5O76039 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.74■■■□□ 2.19
CDKL5O76039 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
CDKL5O76039 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.73■■■□□ 2.19
CDKL5O76039 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.73■■■□□ 2.19
CDKL5O76039 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDKL5O76039 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC28.72■■■□□ 2.19
CDKL5O76039 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.72■■■□□ 2.19
CDKL5O76039 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.72■■■□□ 2.19
CDKL5O76039 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
CDKL5O76039 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDKL5O76039 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.72■■■□□ 2.19
CDKL5O76039 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDKL5O76039 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDKL5O76039 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CDKL5O76039 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
CDKL5O76039 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.71■■■□□ 2.19
CDKL5O76039 MIR639-201ENST00000384974 98 ntBASIC28.71■■■□□ 2.19
CDKL5O76039 AL359258.2-201ENST00000564063 1566 ntBASIC28.71■■■□□ 2.19
CDKL5O76039 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CDKL5O76039 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CDKL5O76039 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CDKL5O76039 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CDKL5O76039 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
CDKL5O76039 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CDKL5O76039 AC126177.7-201ENST00000547904 679 ntBASIC28.69■■■□□ 2.18
CDKL5O76039 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.69■■■□□ 2.18
CDKL5O76039 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CDKL5O76039 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.68■■■□□ 2.18
CDKL5O76039 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.68■■■□□ 2.18
CDKL5O76039 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CDKL5O76039 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.67■■■□□ 2.18
CDKL5O76039 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CDKL5O76039 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CDKL5O76039 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
CDKL5O76039 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.65■■■□□ 2.18
CDKL5O76039 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CDKL5O76039 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.65■■■□□ 2.18
CDKL5O76039 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.65■■■□□ 2.18
CDKL5O76039 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CDKL5O76039 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.65■■■□□ 2.18
CDKL5O76039 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.65■■■□□ 2.18
CDKL5O76039 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CDKL5O76039 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.64■■■□□ 2.18
CDKL5O76039 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CDKL5O76039 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.64■■■□□ 2.18
CDKL5O76039 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC28.63■■■□□ 2.17
CDKL5O76039 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CDKL5O76039 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.63■■■□□ 2.17
CDKL5O76039 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDKL5O76039 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDKL5O76039 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
CDKL5O76039 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.62■■■□□ 2.17
CDKL5O76039 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
CDKL5O76039 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms