Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC6.97□□□□□ -1.291e-7■□□□□ 9.4
SUB1P53999 TARDBP-227ENST00000622057 706 ntTSL 56.81□□□□□ -1.321e-11■□□□□ 9.4
SUB1P53999 TARDBP-213ENST00000611963 739 ntTSL 56.38□□□□□ -1.391e-11■□□□□ 9.4
SUB1P53999 TARDBP-222ENST00000620505 657 ntTSL 56.35□□□□□ -1.391e-11■□□□□ 9.4
SUB1P53999 TARDBP-224ENST00000621573 992 ntTSL 36.21□□□□□ -1.421e-11■□□□□ 9.4
SUB1P53999 TARDBP-216ENST00000614494 515 ntTSL 55.38□□□□□ -1.551e-11■□□□□ 9.4
SUB1P53999 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.575e-6■□□□□ 9.4
SUB1P53999 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.651e-7■□□□□ 9.4
SUB1P53999 SND1-216ENST00000492840 472 ntTSL 53.95□□□□□ -1.785e-6■□□□□ 9.4
SUB1P53999 RTN4-215ENST00000491592 860 ntTSL 23.83□□□□□ -1.81e-15■□□□□ 9.4
SUB1P53999 RTN4-213ENST00000485749 832 ntTSL 23.74□□□□□ -1.811e-15■□□□□ 9.4
SUB1P53999 AL109811.4-202ENST00000611136 700 ntTSL 53.2□□□□□ -1.91e-11■□□□□ 9.4
SUB1P53999 HSPA8-223ENST00000534567 588 ntTSL 43.14□□□□□ -1.913e-14■□□□□ 9.4
SUB1P53999 HSPA8-204ENST00000524590 536 ntTSL 52.35□□□□□ -2.033e-14■□□□□ 9.4
SUB1P53999 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.27□□□□□ -2.051e-7■□□□□ 9.4
SUB1P53999 TARDBP-212ENST00000611008 929 ntTSL 52.21□□□□□ -2.061e-11■□□□□ 9.4
SUB1P53999 TARDBP-208ENST00000477447 409 ntTSL 52.02□□□□□ -2.091e-11■□□□□ 9.4
SUB1P53999 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 52.02□□□□□ -2.091e-11■□□□□ 9.4
SUB1P53999 TARDBP-214ENST00000613177 379 ntTSL 31.9□□□□□ -2.111e-11■□□□□ 9.4
SUB1P53999 CIRBP-220ENST00000588917 1087 ntTSL 215.26■□□□□ 0.037e-8■□□□□ 9.3
SUB1P53999 CIRBP-227ENST00000590188 361 ntTSL 313.51□□□□□ -0.257e-8■□□□□ 9.3
SUB1P53999 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.122e-11■□□□□ 9.3
SUB1P53999 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.122e-11■□□□□ 9.3
SUB1P53999 RAD23A-204ENST00000588329 1034 ntTSL 514.13□□□□□ -0.152e-11■□□□□ 9.3
SUB1P53999 RAD23A-208ENST00000591499 1350 ntTSL 213.96□□□□□ -0.182e-11■□□□□ 9.3
SUB1P53999 RAD23A-210ENST00000593114 1691 ntTSL 513.04□□□□□ -0.322e-11■□□□□ 9.3
SUB1P53999 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC11.43□□□□□ -0.582e-11■□□□□ 9.3
SUB1P53999 FASN-205ENST00000584610 857 ntTSL 214.22□□□□□ -0.133e-9■□□□□ 9.3
SUB1P53999 GLUL-205ENST00000461447 689 ntTSL 28.44□□□□□ -1.066e-9■□□□□ 9.3
SUB1P53999 TRIM28-208ENST00000597172 577 ntTSL 27.34□□□□□ -1.231e-6■□□□□ 9.3
SUB1P53999 MCM3-206ENST00000596983 559 ntTSL 311.53□□□□□ -0.565e-10■□□□□ 9.3
SUB1P53999 MCM3-202ENST00000419835 2523 ntTSL 2 BASIC10.06□□□□□ -0.85e-10■□□□□ 9.3
SUB1P53999 SEC13-215ENST00000477547 1313 ntTSL 211.9□□□□□ -0.55e-7■□□□□ 9.3
SUB1P53999 SEC13-214ENST00000476597 614 ntTSL 28□□□□□ -1.135e-7■□□□□ 9.3
SUB1P53999 RPL18A-207ENST00000602216 907 ntTSL 213.2□□□□□ -0.39e-16■□□□□ 9.3
SUB1P53999 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.479e-16■□□□□ 9.3
SUB1P53999 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC11.15□□□□□ -0.639e-16■□□□□ 9.3
SUB1P53999 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC10.94□□□□□ -0.669e-16■□□□□ 9.3
SUB1P53999 RPL18A-202ENST00000597648 683 ntTSL 310.33□□□□□ -0.769e-16■□□□□ 9.3
SUB1P53999 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC10.26□□□□□ -0.779e-16■□□□□ 9.3
SUB1P53999 RPL18A-206ENST00000600238 954 ntTSL 28.83□□□□□ -19e-16■□□□□ 9.3
SUB1P53999 RPL11-204ENST00000467075 377 ntTSL 310.32□□□□□ -0.765e-73■□□□□ 9.3
SUB1P53999 CANX-214ENST00000508787 568 ntTSL 32.81□□□□□ -1.967e-8■□□□□ 9.3
SUB1P53999 CANX-206ENST00000503126 592 ntTSL 51.76□□□□□ -2.137e-8■□□□□ 9.3
SUB1P53999 CCT7-204ENST00000409924 567 ntTSL 315.32■□□□□ 0.044e-9■□□□□ 9.3
SUB1P53999 CCT7-211ENST00000480489 527 ntTSL 215.32■□□□□ 0.044e-9■□□□□ 9.3
SUB1P53999 CCT7-203ENST00000399032 593 ntTSL 414.86□□□□□ -0.034e-9■□□□□ 9.3
SUB1P53999 CCT7-208ENST00000471927 556 ntTSL 413.07□□□□□ -0.324e-9■□□□□ 9.3
SUB1P53999 CCT7-209ENST00000473197 595 ntTSL 413.07□□□□□ -0.324e-9■□□□□ 9.3
SUB1P53999 CCT7-206ENST00000464397 583 ntTSL 212.31□□□□□ -0.444e-9■□□□□ 9.3
SUB1P53999 CCT7-207ENST00000469844 612 ntTSL 411.63□□□□□ -0.554e-9■□□□□ 9.3
SUB1P53999 CCT7-205ENST00000461290 1018 ntTSL 211.23□□□□□ -0.614e-9■□□□□ 9.3
SUB1P53999 CCT7-210ENST00000473786 811 ntTSL 56.92□□□□□ -1.34e-9■□□□□ 9.3
SUB1P53999 CCT7-212ENST00000482064 567 ntTSL 46.63□□□□□ -1.354e-9■□□□□ 9.3
SUB1P53999 CCT7-214ENST00000492253 531 ntTSL 45.07□□□□□ -1.64e-9■□□□□ 9.3
SUB1P53999 CCT7-217ENST00000626868 249 ntTSL 5 BASIC2.93□□□□□ -1.944e-9■□□□□ 9.3
SUB1P53999 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.564e-15■□□□□ 9.2
SUB1P53999 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.413e-41■□□□□ 9.2
SUB1P53999 CALR-204ENST00000586967 394 ntTSL 211.68□□□□□ -0.543e-41■□□□□ 9.2
SUB1P53999 CALR-202ENST00000586760 913 ntTSL 28.72□□□□□ -1.013e-41■□□□□ 9.2
SUB1P53999 SND1-210ENST00000483503 603 ntTSL 59.68□□□□□ -0.861e-6■□□□□ 9.2
SUB1P53999 SND1-215ENST00000492772 549 ntTSL 47.89□□□□□ -1.151e-6■□□□□ 9.2
SUB1P53999 HNRNPL-203ENST00000595164 2404 ntTSL 210.66□□□□□ -0.71e-25■□□□□ 9.2
SUB1P53999 HNRNPL-204ENST00000595443 2122 ntTSL 29.17□□□□□ -0.941e-25■□□□□ 9.2
SUB1P53999 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.031e-25■□□□□ 9.2
SUB1P53999 HNRNPL-206ENST00000597731 3094 ntTSL 28.35□□□□□ -1.071e-25■□□□□ 9.2
SUB1P53999 HNRNPL-205ENST00000595804 588 ntTSL 27.29□□□□□ -1.241e-25■□□□□ 9.2
SUB1P53999 AC008982.1-202ENST00000602021 342 ntTSL 55.86□□□□□ -1.471e-25■□□□□ 9.2
SUB1P53999 MAN2A2-228ENST00000561047 1057 ntTSL 513.59□□□□□ -0.232e-6■□□□□ 9.2
SUB1P53999 NDUFV1-207ENST00000526169 774 ntTSL 1 (best)14.96□□□□□ -0.017e-10■□□□□ 9.2
SUB1P53999 NDUFV1-208ENST00000526770 1748 ntTSL 514.86□□□□□ -0.037e-10■□□□□ 9.2
SUB1P53999 EIF4G1-226ENST00000450424 2658 ntTSL 514.64□□□□□ -0.077e-10■□□□□ 9.2
SUB1P53999 EIF4G1-237ENST00000485712 474 ntTSL 414.54□□□□□ -0.087e-10■□□□□ 9.2
SUB1P53999 NDUFV1-210ENST00000527923 594 ntTSL 213.75□□□□□ -0.217e-10■□□□□ 9.2
SUB1P53999 EIF4G1-208ENST00000413967 2808 ntTSL 213.45□□□□□ -0.267e-10■□□□□ 9.2
SUB1P53999 EIF4G1-210ENST00000421110 2755 ntTSL 513.41□□□□□ -0.267e-10■□□□□ 9.2
SUB1P53999 EIF4G1-213ENST00000426123 2907 ntTSL 212.14□□□□□ -0.477e-10■□□□□ 9.2
SUB1P53999 NDUFV1-209ENST00000527355 679 ntTSL 210.18□□□□□ -0.787e-10■□□□□ 9.2
SUB1P53999 NDUFV1-226ENST00000533919 774 ntTSL 310.18□□□□□ -0.787e-10■□□□□ 9.2
SUB1P53999 EIF4G1-227ENST00000455679 542 ntTSL 49.94□□□□□ -0.827e-10■□□□□ 9.2
SUB1P53999 EIF4G1-214ENST00000427141 730 ntTSL 59.49□□□□□ -0.897e-10■□□□□ 9.2
SUB1P53999 EIF4G1-220ENST00000440448 578 ntTSL 48.38□□□□□ -1.077e-10■□□□□ 9.2
SUB1P53999 EIF4G1-223ENST00000444134 558 ntTSL 58.36□□□□□ -1.077e-10■□□□□ 9.2
SUB1P53999 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.15■□□□□ 0.344e-11■□□□□ 9.1
SUB1P53999 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.134e-11■□□□□ 9.1
SUB1P53999 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.344e-11■□□□□ 9.1
SUB1P53999 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.394e-11■□□□□ 9.1
SUB1P53999 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.61□□□□□ -0.554e-11■□□□□ 9.1
SUB1P53999 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC9.96□□□□□ -0.814e-11■□□□□ 9.1
SUB1P53999 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.26■□□□□ 0.193e-19■□□□□ 9.1
SUB1P53999 RPS6-201ENST00000315377 863 ntTSL 3 BASIC8.72□□□□□ -1.013e-19■□□□□ 9.1
SUB1P53999 RPS6-204ENST00000380394 1387 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.323e-19■□□□□ 9.1
SUB1P53999 GNAS-228ENST00000469431 702 ntTSL 519.53■□□□□ 0.721e-10■□□□□ 9.1
SUB1P53999 FTL-201ENST00000331825 878 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.864e-50■□□□□ 9.1
SUB1P53999 RPLP1-204ENST00000488122 940 ntTSL 215.82■□□□□ 0.122e-27■□□□□ 9.1
SUB1P53999 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC10.04□□□□□ -0.82e-27■□□□□ 9.1
SUB1P53999 RPLP1-203ENST00000487304 1962 ntTSL 59.75□□□□□ -0.852e-27■□□□□ 9.1
SUB1P53999 RPLP1-201ENST00000260379 1197 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.142e-27■□□□□ 9.1
SUB1P53999 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC6.01□□□□□ -1.452e-27■□□□□ 9.1
SUB1P53999 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.61□□□□□ -0.231e-10■□□□□ 9.1
Retrieved 100 of 11,644 protein–RNA pairs in 38.3 ms