RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 AEBP2Q6ZN18 517 aaPredicted RBP19.62■□□□□ 0.73
RTN4-213ENST00000485749 CHIC1Q5VXU3 224 aa18.75■□□□□ 0.59
RTN4-213ENST00000485749 SENP3Q9H4L4 574 aaPredicted RBP16.98■□□□□ 0.31
RTN4-213ENST00000485749 PHF23Q9BUL5 403 aaPredicted RBP16.65■□□□□ 0.26
RTN4-213ENST00000485749 FOXD1Q16676 465 aa15.67■□□□□ 0.1
RTN4-213ENST00000485749 PLPPR3Q6T4P5 718 aa15.06■□□□□ 0
RTN4-213ENST00000485749 MSH5O43196 834 aa14.87□□□□□ -0.03
RTN4-213ENST00000485749 PIAS4Q8N2W9 510 aaPredicted RBP14.73□□□□□ -0.05
RTN4-213ENST00000485749 ADRA2BP18089 450 aa14.55□□□□□ -0.08
RTN4-213ENST00000485749 PPP6R1Q9UPN7 881 aa14.55□□□□□ -0.08
RTN4-213ENST00000485749 POTEDQ86YR6 584 aa14.39□□□□□ -0.11
RTN4-213ENST00000485749 SCAF1Q9H7N4 1312 aaKnown RBP13.58□□□□□ -0.24
RTN4-213ENST00000485749 DMRT2Q9Y5R5 561 aa13.39□□□□□ -0.27
RTN4-213ENST00000485749 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
RTN4-213ENST00000485749 PPP4R3CPQ6ZMV5 832 aa13.12□□□□□ -0.31
RTN4-213ENST00000485749 CNKSR2Q8WXI2 1034 aa12.95□□□□□ -0.34
RTN4-213ENST00000485749 HOXD11P31277 338 aaPredicted RBP12.89□□□□□ -0.35
RTN4-213ENST00000485749 DCAF8L1A6NGE4 600 aa12.88□□□□□ -0.35
RTN4-213ENST00000485749 RNF216Q9NWF9 866 aaPredicted RBP12.83□□□□□ -0.36
RTN4-213ENST00000485749 NCBP3Q53F19 620 aaKnown RBP12.77□□□□□ -0.37
RTN4-213ENST00000485749 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
RTN4-213ENST00000485749 RNF39Q9H2S5 420 aa12.57□□□□□ -0.4
RTN4-213ENST00000485749 DNAJC5BQ9UF47 199 aa12.57□□□□□ -0.4
RTN4-213ENST00000485749 C1QBPQ07021 282 aaKnown RBP12.48□□□□□ -0.41
RTN4-213ENST00000485749 NPM3O75607 178 aaKnown RBP12.39□□□□□ -0.43
RTN4-213ENST00000485749 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.34□□□□□ -0.43
RTN4-213ENST00000485749 KCNA4P22459 653 aa12.09□□□□□ -0.47
RTN4-213ENST00000485749 U3KPZ7 1027 aaPredicted RBP11.97□□□□□ -0.49
RTN4-213ENST00000485749 APLP2Q06481 763 aa11.93□□□□□ -0.5
RTN4-213ENST00000485749 CAPN15O75808 1086 aa11.88□□□□□ -0.51
RTN4-213ENST00000485749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.86□□□□□ -0.51
RTN4-213ENST00000485749 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
RTN4-213ENST00000485749 SLC4A2P04920 1241 aa11.78□□□□□ -0.52
RTN4-213ENST00000485749 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
RTN4-213ENST00000485749 DSG3P32926 999 aa11.75□□□□□ -0.53
RTN4-213ENST00000485749 ZNF219Q9P2Y4 722 aaPredicted RBP11.74□□□□□ -0.53
RTN4-213ENST00000485749 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
RTN4-213ENST00000485749 TRHP20396 242 aaPredicted RBP11.65□□□□□ -0.54
RTN4-213ENST00000485749 MYCNP04198 464 aaPredicted RBP11.57□□□□□ -0.56
RTN4-213ENST00000485749 ABCB7O75027 752 aa11.51□□□□□ -0.57
RTN4-213ENST00000485749 SLC4A1APQ9BWU0 796 aaKnown RBP11.5□□□□□ -0.57
RTN4-213ENST00000485749 FOXD4L1Q9NU39 408 aa11.41□□□□□ -0.58
RTN4-213ENST00000485749 RBM42Q9BTD8 480 aaKnown RBP11.39□□□□□ -0.59
RTN4-213ENST00000485749 POLA2Q14181 598 aa11.32□□□□□ -0.6
RTN4-213ENST00000485749 POTEHQ6S545 545 aa11.32□□□□□ -0.6
RTN4-213ENST00000485749 ZBTB12Q9Y330 459 aaPredicted RBP11.26□□□□□ -0.61
RTN4-213ENST00000485749 ATXN8OSP0DMR3 200 aa11.12□□□□□ -0.63
RTN4-213ENST00000485749 ATF5Q9Y2D1 282 aaPredicted RBP11.09□□□□□ -0.63
RTN4-213ENST00000485749 AKT1S1Q96B36 256 aa11.05□□□□□ -0.64
RTN4-213ENST00000485749 ZBTB22O15209 634 aa11.02□□□□□ -0.65
RTN4-213ENST00000485749 CHRDL2Q6WN34 429 aa11.02□□□□□ -0.65
RTN4-213ENST00000485749 FBLN2P98095 1184 aa10.94□□□□□ -0.66
RTN4-213ENST00000485749 OSCARQ8IYS5 282 aa10.93□□□□□ -0.66
RTN4-213ENST00000485749 REM2Q8IYK8 340 aaPredicted RBP10.86□□□□□ -0.67
RTN4-213ENST00000485749 SPDYE2BA6NHP3 402 aa10.84□□□□□ -0.67
RTN4-213ENST00000485749 SPDYE6P0CI01 402 aa10.84□□□□□ -0.67
RTN4-213ENST00000485749 SPDYE2Q495Y8 402 aa10.84□□□□□ -0.67
RTN4-213ENST00000485749 PITPNM1O00562 1244 aa10.73□□□□□ -0.69
RTN4-213ENST00000485749 PIP4P2Q8N4L2 257 aa10.71□□□□□ -0.69
RTN4-213ENST00000485749 SPDYE1Q8NFV5 336 aaPredicted RBP10.67□□□□□ -0.7
RTN4-213ENST00000485749 ZNF692Q9BU19 519 aaPredicted RBP10.67□□□□□ -0.7
RTN4-213ENST00000485749 FXR2P51116 673 aaKnown RBP eCLIP10.66□□□□□ -0.7
RTN4-213ENST00000485749 EHMT2Q96KQ7 1210 aa10.63□□□□□ -0.71
RTN4-213ENST00000485749 SP7Q8TDD2 431 aaPredicted RBP10.62□□□□□ -0.71
RTN4-213ENST00000485749 MKRN4PQ13434 485 aaPredicted RBP10.61□□□□□ -0.71
RTN4-213ENST00000485749 SSUH2Q9Y2M2 353 aa10.6□□□□□ -0.71
RTN4-213ENST00000485749 HAX1O00165 279 aa10.59□□□□□ -0.71
RTN4-213ENST00000485749 CLEC11AQ9Y240 323 aa10.59□□□□□ -0.71
RTN4-213ENST00000485749 CSRNP3Q8WYN3 585 aa10.56□□□□□ -0.72
RTN4-213ENST00000485749 PRKAR2AP13861 404 aaKnown RBP10.49□□□□□ -0.73
RTN4-213ENST00000485749 PABPN1Q86U42 306 aaKnown RBP eCLIP10.47□□□□□ -0.73
RTN4-213ENST00000485749 PRR29P0C7W0 189 aa10.45□□□□□ -0.74
RTN4-213ENST00000485749 STAG3Q9UJ98 1225 aa10.33□□□□□ -0.76
RTN4-213ENST00000485749 C19orf67A6NJJ6 358 aa10.32□□□□□ -0.76
RTN4-213ENST00000485749 CHADLQ6NUI6 762 aa10.29□□□□□ -0.76
RTN4-213ENST00000485749 EVX2Q03828 476 aa10.26□□□□□ -0.77
RTN4-213ENST00000485749 SPDYE4A6NLX3 237 aa10.23□□□□□ -0.77
RTN4-213ENST00000485749 CLCN6P51797 869 aa10.23□□□□□ -0.77
RTN4-213ENST00000485749 FARP1Q9Y4F1 1045 aaPredicted RBP10.21□□□□□ -0.77
RTN4-213ENST00000485749 CD44P16070 742 aaKnown RBP10.17□□□□□ -0.78
RTN4-213ENST00000485749 GABBR2O75899 941 aa10.16□□□□□ -0.78
RTN4-213ENST00000485749 PAK3O75914 559 aaPredicted RBP10.09□□□□□ -0.79
RTN4-213ENST00000485749 NPM1P06748 294 aaKnown RBP eCLIP10.07□□□□□ -0.8
RTN4-213ENST00000485749 CREBZFQ9NS37 354 aa10.07□□□□□ -0.8
RTN4-213ENST00000485749 ZRANB1Q9UGI0 708 aa10.03□□□□□ -0.8
RTN4-213ENST00000485749 ZNF579Q8NAF0 562 aaKnown RBP10.02□□□□□ -0.81
RTN4-213ENST00000485749 DCBLD2Q96PD2 775 aa10□□□□□ -0.81
RTN4-213ENST00000485749 PLEKHG5O94827 1062 aa9.97□□□□□ -0.81
RTN4-213ENST00000485749 LHX8Q68G74 356 aa9.96□□□□□ -0.82
RTN4-213ENST00000485749 PROM2Q8N271 834 aa9.92□□□□□ -0.82
RTN4-213ENST00000485749 POTEIP0CG38 1075 aa9.85□□□□□ -0.83
RTN4-213ENST00000485749 MNX1P50219 401 aaPredicted RBP9.85□□□□□ -0.83
RTN4-213ENST00000485749 GALR2O43603 387 aaPredicted RBP9.82□□□□□ -0.84
RTN4-213ENST00000485749 PHF12Q96QT6 1004 aa9.8□□□□□ -0.84
RTN4-213ENST00000485749 MIER1Q8N108 512 aa9.79□□□□□ -0.84
RTN4-213ENST00000485749 ZBTB47Q9UFB7 747 aaPredicted RBP9.79□□□□□ -0.84
RTN4-213ENST00000485749 PLCD3Q8N3E9 789 aa9.75□□□□□ -0.85
RTN4-213ENST00000485749 TSPYL2Q9H2G4 693 aaPredicted RBP9.75□□□□□ -0.85
RTN4-213ENST00000485749 SLC24A1O60721 1099 aa9.7□□□□□ -0.86
RTN4-213ENST00000485749 MS4A3Q96HJ5 214 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms