RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 NISCHQ9Y2I1 1504 aa36.56■■■■□ 3.44
SEC13-215ENST00000477547 CCDC180Q9P1Z9 1646 aa32.47■■■□□ 2.79
SEC13-215ENST00000477547 ABCC9O60706 1549 aa32.34■■■□□ 2.77
SEC13-215ENST00000477547 DNAJC5BQ9UF47 199 aa30.93■■■□□ 2.54
SEC13-215ENST00000477547 ZCCHC6Q5VYS8 1495 aaKnown RBP30.6■■■□□ 2.49
SEC13-215ENST00000477547 RB1CC1Q8TDY2 1594 aa30.41■■■□□ 2.46
SEC13-215ENST00000477547 NACADO15069 1562 aa30.29■■■□□ 2.44
SEC13-215ENST00000477547 DCAF1Q9Y4B6 1507 aa30.28■■■□□ 2.44
SEC13-215ENST00000477547 MYO15BQ96JP2 1530 aa30.23■■■□□ 2.43
SEC13-215ENST00000477547 DCAF8L2P0C7V8 631 aa30.2■■■□□ 2.42
SEC13-215ENST00000477547 PABPN1Q86U42 306 aaKnown RBP eCLIP30.05■■■□□ 2.4
SEC13-215ENST00000477547 UNC13AQ9UPW8 1703 aa29.79■■■□□ 2.36
SEC13-215ENST00000477547 SCRIBQ14160 1630 aa29.63■■■□□ 2.33
SEC13-215ENST00000477547 BICRAQ9NZM4 1560 aa29.61■■■□□ 2.33
SEC13-215ENST00000477547 CECR2Q9BXF3 1484 aa29.15■■■□□ 2.26
SEC13-215ENST00000477547 CC2D2AQ9P2K1 1620 aa29.14■■■□□ 2.26
SEC13-215ENST00000477547 SHROOM4Q9ULL8 1493 aa29.12■■■□□ 2.25
SEC13-215ENST00000477547 EIF4G1Q04637 1599 aaKnown RBP28.92■■■□□ 2.22
SEC13-215ENST00000477547 DNAJC5Q9H3Z4 198 aa28.76■■■□□ 2.19
SEC13-215ENST00000477547 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
SEC13-215ENST00000477547 BAZ1AQ9NRL2 1556 aaPredicted RBP28.35■■■□□ 2.13
SEC13-215ENST00000477547 MROH2BQ7Z745 1585 aa28.19■■■□□ 2.1
SEC13-215ENST00000477547 PEG3Q9GZU2 1588 aa28.04■■■□□ 2.08
SEC13-215ENST00000477547 SMARCA2P51531 1590 aa28.04■■■□□ 2.08
SEC13-215ENST00000477547 CUX2O14529 1486 aa28.01■■■□□ 2.08
SEC13-215ENST00000477547 WIZO95785 1651 aa27.99■■■□□ 2.07
SEC13-215ENST00000477547 ATAD2BQ9ULI0 1458 aa27.97■■■□□ 2.07
SEC13-215ENST00000477547 RSF1Q96T23 1441 aaPredicted RBP27.96■■■□□ 2.07
SEC13-215ENST00000477547 ERCC6Q03468 1493 aa27.91■■■□□ 2.06
SEC13-215ENST00000477547 HMGXB3Q12766 1538 aa27.89■■■□□ 2.06
SEC13-215ENST00000477547 NCAPD3P42695 1498 aa27.86■■■□□ 2.05
SEC13-215ENST00000477547 BAZ1BQ9UIG0 1483 aaKnown RBP27.82■■■□□ 2.04
SEC13-215ENST00000477547 TOP2AP11388 1531 aaKnown RBP27.71■■■□□ 2.03
SEC13-215ENST00000477547 NESP48681 1621 aa27.62■■■□□ 2.01
SEC13-215ENST00000477547 SUPT5HO00267 1087 aaKnown RBP27.54■■■□□ 2
SEC13-215ENST00000477547 THOC2Q8NI27 1593 aaKnown RBP27.4■■□□□ 1.98
SEC13-215ENST00000477547 TRIM41Q8WV44 630 aa27.33■■□□□ 1.97
SEC13-215ENST00000477547 CCDC88BA6NC98 1476 aa27.27■■□□□ 1.96
SEC13-215ENST00000477547 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
SEC13-215ENST00000477547 KIF21AQ7Z4S6 1674 aa27.2■■□□□ 1.95
SEC13-215ENST00000477547 PRDM2Q13029 1718 aa27.16■■□□□ 1.94
SEC13-215ENST00000477547 PDS5BQ9NTI5 1447 aa27.09■■□□□ 1.93
SEC13-215ENST00000477547 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
SEC13-215ENST00000477547 CFTRP13569 1480 aa27.03■■□□□ 1.92
SEC13-215ENST00000477547 MRC2Q9UBG0 1479 aa26.92■■□□□ 1.9
SEC13-215ENST00000477547 WDR62O43379 1518 aa26.86■■□□□ 1.89
SEC13-215ENST00000477547 FANCD2Q9BXW9 1451 aa26.83■■□□□ 1.88
SEC13-215ENST00000477547 CEP164Q9UPV0 1460 aa26.78■■□□□ 1.88
SEC13-215ENST00000477547 OSCARQ8IYS5 282 aa26.68■■□□□ 1.86
SEC13-215ENST00000477547 URB2Q14146 1524 aaKnown RBP26.54■■□□□ 1.84
SEC13-215ENST00000477547 DNMBPQ6XZF7 1577 aa26.52■■□□□ 1.84
SEC13-215ENST00000477547 ABCC8Q09428 1581 aa26.52■■□□□ 1.84
SEC13-215ENST00000477547 TOPBP1Q92547 1522 aa26.46■■□□□ 1.83
SEC13-215ENST00000477547 CUX1P39880 1505 aa26.44■■□□□ 1.82
SEC13-215ENST00000477547 RIMBP3CA6NJZ7 1639 aa26.43■■□□□ 1.82
SEC13-215ENST00000477547 RIMBP3BA6NNM3 1639 aa26.43■■□□□ 1.82
SEC13-215ENST00000477547 RIMBP3Q9UFD9 1639 aa26.43■■□□□ 1.82
SEC13-215ENST00000477547 BIVM-ERCC5R4GMW8 1640 aa26.42■■□□□ 1.82
SEC13-215ENST00000477547 SYNJ1O43426 1573 aa26.41■■□□□ 1.82
SEC13-215ENST00000477547 WRNQ14191 1432 aaPredicted RBP eCLIP26.4■■□□□ 1.82
SEC13-215ENST00000477547 TOP2BQ02880 1626 aa26.37■■□□□ 1.81
SEC13-215ENST00000477547 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
SEC13-215ENST00000477547 POLA1P09884 1462 aaPredicted RBP26.26■■□□□ 1.79
SEC13-215ENST00000477547 ARHGEF11O15085 1522 aa26.26■■□□□ 1.79
SEC13-215ENST00000477547 ZNF608Q9ULD9 1512 aaPredicted RBP26.26■■□□□ 1.79
SEC13-215ENST00000477547 WDR97A6NE52 1622 aa26.19■■□□□ 1.78
SEC13-215ENST00000477547 TARBP1Q13395 1621 aaKnown RBP26.18■■□□□ 1.78
SEC13-215ENST00000477547 IFT140Q96RY7 1462 aa26.16■■□□□ 1.78
SEC13-215ENST00000477547 CYB5RLQ6IPT4 315 aa26.15■■□□□ 1.78
SEC13-215ENST00000477547 RAD54L2Q9Y4B4 1467 aa26.11■■□□□ 1.77
SEC13-215ENST00000477547 SOGA1O94964 1423 aa26.08■■□□□ 1.77
SEC13-215ENST00000477547 TRHP20396 242 aaPredicted RBP26.07■■□□□ 1.76
SEC13-215ENST00000477547 EIF4G3O43432 1585 aaKnown RBP26.06■■□□□ 1.76
SEC13-215ENST00000477547 ABCA10Q8WWZ4 1543 aa26.03■■□□□ 1.76
SEC13-215ENST00000477547 ABCA5Q8WWZ7 1642 aa25.99■■□□□ 1.75
SEC13-215ENST00000477547 ARAP1Q96P48 1450 aa25.99■■□□□ 1.75
SEC13-215ENST00000477547 CHD1O14646 1710 aa25.98■■□□□ 1.75
SEC13-215ENST00000477547 PBRM1Q86U86 1689 aa25.97■■□□□ 1.75
SEC13-215ENST00000477547 AQRO60306 1485 aaKnown RBP eCLIP25.94■■□□□ 1.742e-7■■■■■ 28.2
SEC13-215ENST00000477547 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
SEC13-215ENST00000477547 FBLN2P98095 1184 aa25.91■■□□□ 1.74
SEC13-215ENST00000477547 TDRD9Q8NDG6 1382 aaKnown RBP25.87■■□□□ 1.73
SEC13-215ENST00000477547 GAPVD1Q14C86 1478 aa25.84■■□□□ 1.73
SEC13-215ENST00000477547 KIF27Q86VH2 1401 aa25.79■■□□□ 1.72
SEC13-215ENST00000477547 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
SEC13-215ENST00000477547 ERICH3Q5RHP9 1530 aa25.74■■□□□ 1.71
SEC13-215ENST00000477547 AEBP2Q6ZN18 517 aaPredicted RBP25.73■■□□□ 1.71
SEC13-215ENST00000477547 SNAPC4Q5SXM2 1469 aa25.73■■□□□ 1.71
SEC13-215ENST00000477547 ADAMTS12P58397 1594 aa25.71■■□□□ 1.71
SEC13-215ENST00000477547 RUSC2Q8N2Y8 1516 aa25.7■■□□□ 1.7
SEC13-215ENST00000477547 CUL7Q14999 1698 aa25.7■■□□□ 1.7
SEC13-215ENST00000477547 MAGI1Q96QZ7 1491 aaPredicted RBP25.69■■□□□ 1.7
SEC13-215ENST00000477547 CLASP1Q7Z460 1538 aa25.64■■□□□ 1.7
SEC13-215ENST00000477547 EEA1Q15075 1411 aa25.61■■□□□ 1.69
SEC13-215ENST00000477547 SYNJ2O15056 1496 aa25.58■■□□□ 1.69
SEC13-215ENST00000477547 CHMP7Q8WUX9 453 aaPredicted RBP25.58■■□□□ 1.69
SEC13-215ENST00000477547 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
SEC13-215ENST00000477547 IGF1RP08069 1367 aa25.54■■□□□ 1.68
SEC13-215ENST00000477547 GRIN2AQ12879 1464 aa25.49■■□□□ 1.67
SEC13-215ENST00000477547 FAM9AQ8IZU1 332 aaPredicted RBP25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms