RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NISCHQ9Y2I1 1504 aa22.48■■□□□ 1.19
TRIM28-208ENST00000597172 ABCC9O60706 1549 aa21.6■■□□□ 1.05
TRIM28-208ENST00000597172 DNAJC5BQ9UF47 199 aa21.21■□□□□ 0.99
TRIM28-208ENST00000597172 CCDC180Q9P1Z9 1646 aa20.53■□□□□ 0.88
TRIM28-208ENST00000597172 DNAJC5Q9H3Z4 198 aa20.22■□□□□ 0.83
TRIM28-208ENST00000597172 RB1CC1Q8TDY2 1594 aa20.08■□□□□ 0.8
TRIM28-208ENST00000597172 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.8
TRIM28-208ENST00000597172 NACADO15069 1562 aa19.7■□□□□ 0.74
TRIM28-208ENST00000597172 CECR2Q9BXF3 1484 aa19.56■□□□□ 0.72
TRIM28-208ENST00000597172 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
TRIM28-208ENST00000597172 DCAF8L2P0C7V8 631 aa19.54■□□□□ 0.72
TRIM28-208ENST00000597172 BICRAQ9NZM4 1560 aa19.52■□□□□ 0.71
TRIM28-208ENST00000597172 CC2D2AQ9P2K1 1620 aa19.41■□□□□ 0.7
TRIM28-208ENST00000597172 SHROOM4Q9ULL8 1493 aa19.14■□□□□ 0.65
TRIM28-208ENST00000597172 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
TRIM28-208ENST00000597172 MYO15BQ96JP2 1530 aa19.09■□□□□ 0.65
TRIM28-208ENST00000597172 CUX2O14529 1486 aa19■□□□□ 0.63
TRIM28-208ENST00000597172 TRIM41Q8WV44 630 aa18.93■□□□□ 0.62
TRIM28-208ENST00000597172 ERCC6Q03468 1493 aa18.72■□□□□ 0.59
TRIM28-208ENST00000597172 SCRIBQ14160 1630 aa18.7■□□□□ 0.58
TRIM28-208ENST00000597172 DCAF1Q9Y4B6 1507 aa18.48■□□□□ 0.55
TRIM28-208ENST00000597172 ZCCHC6Q5VYS8 1495 aaKnown RBP18.42■□□□□ 0.54
TRIM28-208ENST00000597172 NESP48681 1621 aa18.26■□□□□ 0.51
TRIM28-208ENST00000597172 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
TRIM28-208ENST00000597172 THOC2Q8NI27 1593 aaKnown RBP18.2■□□□□ 0.5
TRIM28-208ENST00000597172 AEBP2Q6ZN18 517 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-208ENST00000597172 OSCARQ8IYS5 282 aa18.07■□□□□ 0.48
TRIM28-208ENST00000597172 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
TRIM28-208ENST00000597172 ATAD2BQ9ULI0 1458 aa18.03■□□□□ 0.48
TRIM28-208ENST00000597172 HMGXB3Q12766 1538 aa17.95■□□□□ 0.46
TRIM28-208ENST00000597172 BAZ1AQ9NRL2 1556 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-208ENST00000597172 LAMC3Q9Y6N6 1575 aa17.93■□□□□ 0.46
TRIM28-208ENST00000597172 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
TRIM28-208ENST00000597172 KIF21AQ7Z4S6 1674 aa17.93■□□□□ 0.46
TRIM28-208ENST00000597172 TRHP20396 242 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-208ENST00000597172 RIMBP3CA6NJZ7 1639 aa17.82■□□□□ 0.44
TRIM28-208ENST00000597172 RIMBP3BA6NNM3 1639 aa17.82■□□□□ 0.44
TRIM28-208ENST00000597172 RIMBP3Q9UFD9 1639 aa17.82■□□□□ 0.44
TRIM28-208ENST00000597172 MRC2Q9UBG0 1479 aa17.8■□□□□ 0.44
TRIM28-208ENST00000597172 BAZ1BQ9UIG0 1483 aaKnown RBP17.8■□□□□ 0.44
TRIM28-208ENST00000597172 WDR62O43379 1518 aa17.75■□□□□ 0.43
TRIM28-208ENST00000597172 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
TRIM28-208ENST00000597172 SMARCA4P51532 1647 aa17.71■□□□□ 0.43
TRIM28-208ENST00000597172 ARHGEF11O15085 1522 aa17.67■□□□□ 0.42
TRIM28-208ENST00000597172 CADPSQ9ULU8 1353 aa17.66■□□□□ 0.42
TRIM28-208ENST00000597172 PEG3Q9GZU2 1588 aa17.54■□□□□ 0.4
TRIM28-208ENST00000597172 CEP164Q9UPV0 1460 aa17.52■□□□□ 0.4
TRIM28-208ENST00000597172 ILDR1Q86SU0 546 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-208ENST00000597172 ARAP1Q96P48 1450 aa17.44■□□□□ 0.38
TRIM28-208ENST00000597172 FANCD2Q9BXW9 1451 aa17.43■□□□□ 0.38
TRIM28-208ENST00000597172 URB2Q14146 1524 aaKnown RBP17.34■□□□□ 0.37
TRIM28-208ENST00000597172 MROH2BQ7Z745 1585 aa17.31■□□□□ 0.36
TRIM28-208ENST00000597172 ZNF608Q9ULD9 1512 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-208ENST00000597172 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.35
TRIM28-208ENST00000597172 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
TRIM28-208ENST00000597172 CFTRP13569 1480 aa17.21■□□□□ 0.35
TRIM28-208ENST00000597172 FBLN2P98095 1184 aa17.19■□□□□ 0.34
TRIM28-208ENST00000597172 CHD1O14646 1710 aa17.16■□□□□ 0.34
TRIM28-208ENST00000597172 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
TRIM28-208ENST00000597172 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.326e-9■■□□□ 14
TRIM28-208ENST00000597172 WIZO95785 1651 aa17.03■□□□□ 0.32
TRIM28-208ENST00000597172 TOPBP1Q92547 1522 aa16.98■□□□□ 0.31
TRIM28-208ENST00000597172 CLASP1Q7Z460 1538 aa16.95■□□□□ 0.3
TRIM28-208ENST00000597172 KDM4FA0A1W2PPD8 638 aa16.94■□□□□ 0.3
TRIM28-208ENST00000597172 GAPVD1Q14C86 1478 aa16.91■□□□□ 0.3
TRIM28-208ENST00000597172 SUPT5HO00267 1087 aaKnown RBP16.9■□□□□ 0.3
TRIM28-208ENST00000597172 CHMP7Q8WUX9 453 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-208ENST00000597172 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
TRIM28-208ENST00000597172 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
TRIM28-208ENST00000597172 SYNJ1O43426 1573 aa16.86■□□□□ 0.29
TRIM28-208ENST00000597172 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
TRIM28-208ENST00000597172 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
TRIM28-208ENST00000597172 DNMBPQ6XZF7 1577 aa16.8■□□□□ 0.28
TRIM28-208ENST00000597172 SNAPC4Q5SXM2 1469 aa16.8■□□□□ 0.28
TRIM28-208ENST00000597172 TOP2AP11388 1531 aaKnown RBP16.74■□□□□ 0.27
TRIM28-208ENST00000597172 POLA1P09884 1462 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-208ENST00000597172 KIF13AQ9H1H9 1805 aa16.73■□□□□ 0.27
TRIM28-208ENST00000597172 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
TRIM28-208ENST00000597172 MAGI1Q96QZ7 1491 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-208ENST00000597172 SOGA1O94964 1423 aa16.7■□□□□ 0.26
TRIM28-208ENST00000597172 SYNJ2O15056 1496 aa16.68■□□□□ 0.26
TRIM28-208ENST00000597172 FBXO41Q8TF61 875 aa16.68■□□□□ 0.26
TRIM28-208ENST00000597172 FAM69CQ0P6D2 419 aa16.67■□□□□ 0.26
TRIM28-208ENST00000597172 ERCC6L2Q5T890 1561 aa16.64■□□□□ 0.25
TRIM28-208ENST00000597172 GRIN2BQ13224 1484 aa16.63■□□□□ 0.25
TRIM28-208ENST00000597172 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
TRIM28-208ENST00000597172 WDR97A6NE52 1622 aa16.6■□□□□ 0.25
TRIM28-208ENST00000597172 KDM6BO15054 1643 aa16.57■□□□□ 0.24
TRIM28-208ENST00000597172 HECW2Q9P2P5 1572 aa16.57■□□□□ 0.24
TRIM28-208ENST00000597172 ABCC10Q5T3U5 1492 aa16.56■□□□□ 0.24
TRIM28-208ENST00000597172 LMTK3Q96Q04 1460 aa16.52■□□□□ 0.23
TRIM28-208ENST00000597172 CEP170Q5SW79 1584 aa16.51■□□□□ 0.23
TRIM28-208ENST00000597172 ADGRL1O94910 1474 aa16.5■□□□□ 0.23
TRIM28-208ENST00000597172 FGD5Q6ZNL6 1462 aa16.49■□□□□ 0.23
TRIM28-208ENST00000597172 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
TRIM28-208ENST00000597172 SOCS7O14512 581 aa16.44■□□□□ 0.22
TRIM28-208ENST00000597172 DIP2BQ9P265 1576 aa16.43■□□□□ 0.22
TRIM28-208ENST00000597172 TSPOAP1O95153 1857 aa16.42■□□□□ 0.22
TRIM28-208ENST00000597172 PBRM1Q86U86 1689 aa16.41■□□□□ 0.22
TRIM28-208ENST00000597172 GRIN2AQ12879 1464 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms