RNA–Protein interactions for RNA: ENST00000492840.1

SND1-216, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 5

Gene SND1, Length 472 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-216ENST00000492840 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
SND1-216ENST00000492840 AEBP2Q6ZN18 517 aaPredicted RBP17.25■□□□□ 0.35
SND1-216ENST00000492840 PHF23Q9BUL5 403 aaPredicted RBP15.61■□□□□ 0.09
SND1-216ENST00000492840 PLPPR3Q6T4P5 718 aa14.66□□□□□ -0.06
SND1-216ENST00000492840 SENP3Q9H4L4 574 aaPredicted RBP14.45□□□□□ -0.1
SND1-216ENST00000492840 EHMT2Q96KQ7 1210 aa13.79□□□□□ -0.2
SND1-216ENST00000492840 ADRA2BP18089 450 aa13.74□□□□□ -0.21
SND1-216ENST00000492840 KCNA4P22459 653 aa13.71□□□□□ -0.21
SND1-216ENST00000492840 PPP6R1Q9UPN7 881 aa13.49□□□□□ -0.25
SND1-216ENST00000492840 FOXD1Q16676 465 aa13.34□□□□□ -0.27
SND1-216ENST00000492840 CSRNP3Q8WYN3 585 aa13.24□□□□□ -0.29
SND1-216ENST00000492840 SLC4A1APQ9BWU0 796 aaKnown RBP13.18□□□□□ -0.3
SND1-216ENST00000492840 PPP4R3CPQ6ZMV5 832 aa13.04□□□□□ -0.32
SND1-216ENST00000492840 NCBP3Q53F19 620 aaKnown RBP12.9□□□□□ -0.34
SND1-216ENST00000492840 NPM3O75607 178 aaKnown RBP12.77□□□□□ -0.37
SND1-216ENST00000492840 PIAS4Q8N2W9 510 aaPredicted RBP12.77□□□□□ -0.37
SND1-216ENST00000492840 ZBTB22O15209 634 aa12.66□□□□□ -0.38
SND1-216ENST00000492840 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
SND1-216ENST00000492840 CNKSR2Q8WXI2 1034 aa12.47□□□□□ -0.41
SND1-216ENST00000492840 FOXD4L1Q9NU39 408 aa12.36□□□□□ -0.43
SND1-216ENST00000492840 RTN4Q9NQC3 1192 aaKnown RBP12.35□□□□□ -0.43
SND1-216ENST00000492840 AMER1Q5JTC6 1135 aaPredicted RBP12.31□□□□□ -0.44
SND1-216ENST00000492840 SCAF1Q9H7N4 1312 aaKnown RBP12.31□□□□□ -0.44
SND1-216ENST00000492840 DNAJC5BQ9UF47 199 aa12.27□□□□□ -0.45
SND1-216ENST00000492840 RNF216Q9NWF9 866 aaPredicted RBP12.03□□□□□ -0.48
SND1-216ENST00000492840 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
SND1-216ENST00000492840 MSH5O43196 834 aa11.93□□□□□ -0.5
SND1-216ENST00000492840 FKBP8Q14318 412 aa11.9□□□□□ -0.5
SND1-216ENST00000492840 SLC4A2P04920 1241 aa11.86□□□□□ -0.51
SND1-216ENST00000492840 ATXN8OSP0DMR3 200 aa11.83□□□□□ -0.52
SND1-216ENST00000492840 HOXD11P31277 338 aaPredicted RBP11.78□□□□□ -0.52
SND1-216ENST00000492840 MYCNP04198 464 aaPredicted RBP11.76□□□□□ -0.53
SND1-216ENST00000492840 DMRT2Q9Y5R5 561 aa11.68□□□□□ -0.54
SND1-216ENST00000492840 ATF5Q9Y2D1 282 aaPredicted RBP11.42□□□□□ -0.58
SND1-216ENST00000492840 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
SND1-216ENST00000492840 SAMD1Q6SPF0 538 aaPredicted RBP11.24□□□□□ -0.61
SND1-216ENST00000492840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.23□□□□□ -0.61
SND1-216ENST00000492840 HNRNPUL2Q1KMD3 747 aaKnown RBP11.23□□□□□ -0.61
SND1-216ENST00000492840 FBXO3Q9UK99 471 aa11.21□□□□□ -0.61
SND1-216ENST00000492840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.18□□□□□ -0.624e-7■□□□□ 8.7
SND1-216ENST00000492840 HAP1P54257 671 aaPredicted RBP11.17□□□□□ -0.62
SND1-216ENST00000492840 U3KPZ7 1027 aaPredicted RBP11.16□□□□□ -0.62
SND1-216ENST00000492840 BCANQ96GW7 911 aa11.11□□□□□ -0.63
SND1-216ENST00000492840 DCAF8L1A6NGE4 600 aa11.1□□□□□ -0.63
SND1-216ENST00000492840 ZNF219Q9P2Y4 722 aaPredicted RBP11.1□□□□□ -0.63
SND1-216ENST00000492840 SPDYE4A6NLX3 237 aa11.09□□□□□ -0.63
SND1-216ENST00000492840 VASPP50552 380 aaPredicted RBP11.08□□□□□ -0.64
SND1-216ENST00000492840 PRKCSHP14314 528 aaPredicted RBP11.06□□□□□ -0.64
SND1-216ENST00000492840 PROM2Q8N271 834 aa11.06□□□□□ -0.64
SND1-216ENST00000492840 DCAF8L2P0C7V8 631 aa11.05□□□□□ -0.64
SND1-216ENST00000492840 TAOK2Q9UL54 1235 aa11.01□□□□□ -0.65
SND1-216ENST00000492840 IFNLR1Q8IU57 520 aaPredicted RBP11□□□□□ -0.65
SND1-216ENST00000492840 VSIG10Q8N0Z9 540 aa11□□□□□ -0.65
SND1-216ENST00000492840 MKRN4PQ13434 485 aaPredicted RBP10.97□□□□□ -0.65
SND1-216ENST00000492840 PKD2Q13563 968 aa10.97□□□□□ -0.65
SND1-216ENST00000492840 APLP2Q06481 763 aa10.9□□□□□ -0.66
SND1-216ENST00000492840 TPRNQ4KMQ1 711 aa10.84□□□□□ -0.67
SND1-216ENST00000492840 KDM2AQ9Y2K7 1162 aa10.84□□□□□ -0.67
SND1-216ENST00000492840 FBLN2P98095 1184 aa10.82□□□□□ -0.68
SND1-216ENST00000492840 BBXQ8WY36 941 aaPredicted RBP10.81□□□□□ -0.68
SND1-216ENST00000492840 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.81□□□□□ -0.68
SND1-216ENST00000492840 NPM1P06748 294 aaKnown RBP eCLIP10.75□□□□□ -0.69
SND1-216ENST00000492840 PAXIP1Q6ZW49 1069 aaPredicted RBP10.75□□□□□ -0.69
SND1-216ENST00000492840 ECM2O94769 699 aaPredicted RBP10.71□□□□□ -0.69
SND1-216ENST00000492840 SPOCK2Q92563 424 aa10.71□□□□□ -0.69
SND1-216ENST00000492840 CFAP44Q96MT7 982 aa10.71□□□□□ -0.69
SND1-216ENST00000492840 KLHL34Q8N239 644 aa10.65□□□□□ -0.7
SND1-216ENST00000492840 POLA2Q14181 598 aa10.64□□□□□ -0.71
SND1-216ENST00000492840 TRHP20396 242 aaPredicted RBP10.63□□□□□ -0.71
SND1-216ENST00000492840 RGL2O15211 777 aa10.62□□□□□ -0.71
SND1-216ENST00000492840 SPRYD3Q8NCJ5 442 aa10.61□□□□□ -0.71
SND1-216ENST00000492840 TSHZ2Q9NRE2 1034 aa10.61□□□□□ -0.71
SND1-216ENST00000492840 SPINK5Q9NQ38 1064 aaPredicted RBP10.59□□□□□ -0.71
SND1-216ENST00000492840 DNAJC5Q9H3Z4 198 aa10.51□□□□□ -0.73
SND1-216ENST00000492840 STAG3Q9UJ98 1225 aa10.51□□□□□ -0.73
SND1-216ENST00000492840 ZBTB12Q9Y330 459 aaPredicted RBP10.51□□□□□ -0.73
SND1-216ENST00000492840 PLCD3Q8N3E9 789 aa10.48□□□□□ -0.73
SND1-216ENST00000492840 CAPN15O75808 1086 aa10.47□□□□□ -0.73
SND1-216ENST00000492840 CHGAP10645 457 aaKnown RBP10.47□□□□□ -0.73
SND1-216ENST00000492840 NBR1Q14596 966 aa10.47□□□□□ -0.73
SND1-216ENST00000492840 TIMELESSQ9UNS1 1208 aa10.44□□□□□ -0.74
SND1-216ENST00000492840 MIER1Q8N108 512 aa10.39□□□□□ -0.75
SND1-216ENST00000492840 ZNF692Q9BU19 519 aaPredicted RBP10.39□□□□□ -0.75
SND1-216ENST00000492840 ABCB7O75027 752 aa10.38□□□□□ -0.75
SND1-216ENST00000492840 CIZ1Q9ULV3 898 aaPredicted RBP10.38□□□□□ -0.75
SND1-216ENST00000492840 TULP1O00294 542 aaPredicted RBP10.37□□□□□ -0.75
SND1-216ENST00000492840 HS6ST3Q8IZP7 471 aa10.37□□□□□ -0.75
SND1-216ENST00000492840 SSUH2Q9Y2M2 353 aa10.36□□□□□ -0.75
SND1-216ENST00000492840 RNF39Q9H2S5 420 aa10.34□□□□□ -0.75
SND1-216ENST00000492840 TRIM41Q8WV44 630 aa10.32□□□□□ -0.76
SND1-216ENST00000492840 GTF3C3Q9Y5Q9 886 aa10.32□□□□□ -0.76
SND1-216ENST00000492840 SPDYE2BA6NHP3 402 aa10.31□□□□□ -0.76
SND1-216ENST00000492840 SPDYE6P0CI01 402 aa10.31□□□□□ -0.76
SND1-216ENST00000492840 SPDYE2Q495Y8 402 aa10.31□□□□□ -0.76
SND1-216ENST00000492840 PABPN1Q86U42 306 aaKnown RBP eCLIP10.3□□□□□ -0.76
SND1-216ENST00000492840 ZBTB47Q9UFB7 747 aaPredicted RBP10.29□□□□□ -0.76
SND1-216ENST00000492840 OSCARQ8IYS5 282 aa10.28□□□□□ -0.76
SND1-216ENST00000492840 RNF25Q96BH1 459 aaPredicted RBP10.26□□□□□ -0.77
SND1-216ENST00000492840 PLEKHG5O94827 1062 aa10.24□□□□□ -0.77
SND1-216ENST00000492840 NKX1-1Q15270 411 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms