Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA3P55318 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA3P55318 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA3P55318 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.57■□□□□ 0.56
FOXA3P55318 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA3P55318 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
FOXA3P55318 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
FOXA3P55318 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA3P55318 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA3P55318 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
FOXA3P55318 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA3P55318 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.54■□□□□ 0.56
FOXA3P55318 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA3P55318 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
FOXA3P55318 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA3P55318 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA3P55318 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA3P55318 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA3P55318 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA3P55318 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA3P55318 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
FOXA3P55318 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA3P55318 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC18.53■□□□□ 0.56
FOXA3P55318 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA3P55318 AP002365.1-201ENST00000603448 772 ntBASIC18.53■□□□□ 0.56
FOXA3P55318 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA3P55318 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA3P55318 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA3P55318 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
FOXA3P55318 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA3P55318 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.52■□□□□ 0.56
FOXA3P55318 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA3P55318 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.52■□□□□ 0.55
FOXA3P55318 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
FOXA3P55318 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXA3P55318 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA3P55318 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXA3P55318 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXA3P55318 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXA3P55318 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
FOXA3P55318 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
FOXA3P55318 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.49■□□□□ 0.55
FOXA3P55318 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.49■□□□□ 0.55
FOXA3P55318 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA3P55318 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
FOXA3P55318 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA3P55318 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.48■□□□□ 0.55
FOXA3P55318 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
FOXA3P55318 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA3P55318 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA3P55318 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA3P55318 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.47■□□□□ 0.55
FOXA3P55318 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC18.47■□□□□ 0.55
FOXA3P55318 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.47■□□□□ 0.55
FOXA3P55318 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA3P55318 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA3P55318 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA3P55318 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA3P55318 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.47■□□□□ 0.55
FOXA3P55318 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA3P55318 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
FOXA3P55318 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC18.46■□□□□ 0.55
FOXA3P55318 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA3P55318 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA3P55318 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA3P55318 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA3P55318 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.45■□□□□ 0.54
FOXA3P55318 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
FOXA3P55318 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
FOXA3P55318 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
FOXA3P55318 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
FOXA3P55318 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
FOXA3P55318 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.44■□□□□ 0.54
FOXA3P55318 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA3P55318 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.44■□□□□ 0.54
FOXA3P55318 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.44■□□□□ 0.54
FOXA3P55318 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
FOXA3P55318 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA3P55318 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA3P55318 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA3P55318 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA3P55318 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.43■□□□□ 0.54
FOXA3P55318 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA3P55318 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA3P55318 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms