Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 PDE9A-219ENST00000467403 1661 ntTSL 1 (best)13.92□□□□□ -0.181e-6■■■■□ 23
CDC40O60508 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.35□□□□□ -0.271e-6■■■■□ 23
CDC40O60508 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC12.25□□□□□ -0.451e-6■■■■□ 23
CDC40O60508 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC11.77□□□□□ -0.521e-6■■■■□ 23
CDC40O60508 PDE9A-211ENST00000398232 1885 ntTSL 1 (best) BASIC10.87□□□□□ -0.671e-6■■■■□ 23
CDC40O60508 PDE9A-210ENST00000398229 1684 ntTSL 1 (best) BASIC10.11□□□□□ -0.791e-6■■■■□ 23
CDC40O60508 PDE9A-207ENST00000398224 1671 ntTSL 1 (best) BASIC10.11□□□□□ -0.791e-6■■■■□ 23
CDC40O60508 PDE9A-204ENST00000335512 1883 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.911e-6■■■■□ 23
CDC40O60508 PDE9A-222ENST00000472401 431 ntTSL 38.53□□□□□ -1.041e-6■■■■□ 23
CDC40O60508 PDE9A-223ENST00000486902 794 ntTSL 28.53□□□□□ -1.041e-6■■■■□ 23
CDC40O60508 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.662e-6■■■■□ 23
CDC40O60508 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)10.93□□□□□ -0.662e-6■■■■□ 23
CDC40O60508 AKT2-239ENST00000583859 567 ntTSL 523.54■■□□□ 1.363e-6■■■■□ 23
CDC40O60508 AKT2-203ENST00000391844 1795 ntTSL 1 (best)22.18■■□□□ 1.143e-6■■■■□ 23
CDC40O60508 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.15■□□□□ 0.823e-6■■■■□ 23
CDC40O60508 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.83e-6■■■■□ 23
CDC40O60508 AKT2-214ENST00000456441 582 ntTSL 320.02■□□□□ 0.83e-6■■■■□ 23
CDC40O60508 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.49■□□□□ 0.713e-6■■■■□ 23
CDC40O60508 AKT2-240ENST00000584288 1706 ntTSL 217.88■□□□□ 0.453e-6■■■■□ 23
CDC40O60508 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.363e-6■■■■□ 23
CDC40O60508 AKT2-208ENST00000416994 904 ntTSL 417.02■□□□□ 0.323e-6■■■■□ 23
CDC40O60508 AKT2-228ENST00000537834 1402 ntTSL 216.65■□□□□ 0.263e-6■■■■□ 23
CDC40O60508 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.23e-6■■■■□ 23
CDC40O60508 RPTOR-208ENST00000574767 2461 ntTSL 214.37□□□□□ -0.113e-6■■■■□ 23
CDC40O60508 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.87□□□□□ -0.193e-6■■■■□ 23
CDC40O60508 ARAP1-208ENST00000452383 994 ntTSL 313.65□□□□□ -0.223e-6■■■■□ 23
CDC40O60508 AKT2-227ENST00000498350 562 ntTSL 413.54□□□□□ -0.243e-6■■■■□ 23
CDC40O60508 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.273e-6■■■■□ 23
CDC40O60508 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.383e-6■■■■□ 23
CDC40O60508 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC12.64□□□□□ -0.393e-6■■■■□ 23
CDC40O60508 PPIA-208ENST00000489459 907 ntTSL 2 BASIC12.64□□□□□ -0.393e-6■■■■□ 23
CDC40O60508 PPIA-210ENST00000620047 827 ntTSL 5 BASIC12.64□□□□□ -0.393e-6■■■■□ 23
CDC40O60508 ARAP1-206ENST00000427971 1101 ntTSL 512.24□□□□□ -0.453e-6■■■■□ 23
CDC40O60508 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.473e-6■■■■□ 23
CDC40O60508 BDH1-204ENST00000431056 453 ntTSL 511.46□□□□□ -0.573e-6■■■■□ 23
CDC40O60508 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.593e-6■■■■□ 23
CDC40O60508 AKT2-213ENST00000452077 577 ntTSL 311□□□□□ -0.653e-6■■■■□ 23
CDC40O60508 PPIA-209ENST00000494484 2149 ntTSL 210.16□□□□□ -0.783e-6■■■■□ 23
CDC40O60508 AKT2-229ENST00000578123 564 ntTSL 410.12□□□□□ -0.793e-6■■■■□ 23
CDC40O60508 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC9.6□□□□□ -0.873e-6■■■■□ 23
CDC40O60508 PPIA-205ENST00000479021 552 ntTSL 49.59□□□□□ -0.873e-6■■■■□ 23
CDC40O60508 HNRNPC-209ENST00000554383 1039 ntTSL 59.38□□□□□ -0.913e-6■■■■□ 23
CDC40O60508 EIF3B-211ENST00000475415 3745 ntTSL 29.37□□□□□ -0.913e-6■■■■□ 23
CDC40O60508 AKT2-202ENST00000358335 546 ntTSL 49.27□□□□□ -0.933e-6■■■■□ 23
CDC40O60508 AKT2-241ENST00000596634 583 ntTSL 58.99□□□□□ -0.973e-6■■■■□ 23
CDC40O60508 AKT2-219ENST00000486368 606 ntTSL 48.91□□□□□ -0.983e-6■■■■□ 23
CDC40O60508 HNRNPC-220ENST00000555585 682 ntTSL 28.81□□□□□ -13e-6■■■■□ 23
CDC40O60508 AKT2-209ENST00000423127 798 ntTSL 58.75□□□□□ -1.013e-6■■■■□ 23
CDC40O60508 RPTOR-204ENST00000572733 424 ntTSL 38.73□□□□□ -1.013e-6■■■■□ 23
CDC40O60508 PPIA-202ENST00000415933 863 ntTSL 28.72□□□□□ -1.013e-6■■■■□ 23
CDC40O60508 PPIA-206ENST00000480603 842 ntTSL 37.89□□□□□ -1.153e-6■■■■□ 23
CDC40O60508 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.233e-6■■■■□ 23
CDC40O60508 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.273e-6■■■■□ 23
CDC40O60508 HNRNPC-210ENST00000554417 691 ntTSL 26.64□□□□□ -1.353e-6■■■■□ 23
CDC40O60508 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.38□□□□□ -1.393e-6■■■■□ 23
CDC40O60508 PPIA-207ENST00000481437 570 ntTSL 26.38□□□□□ -1.393e-6■■■■□ 23
CDC40O60508 PRRC2C-211ENST00000495585 5566 ntTSL 1 (best)4.74□□□□□ -1.653e-6■■■■□ 23
CDC40O60508 GMCL1-203ENST00000471404 842 ntTSL 52.45□□□□□ -2.023e-6■■■■□ 23
CDC40O60508 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.594e-7■■■■□ 23
CDC40O60508 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.654e-7■■■■□ 23
CDC40O60508 PTMA-206ENST00000412128 863 ntTSL 322.7■■□□□ 1.222e-7■■■■□ 22.9
CDC40O60508 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.53■□□□□ 0.882e-7■■■■□ 22.9
CDC40O60508 PTMA-208ENST00000448874 1108 ntTSL 215.49■□□□□ 0.072e-7■■■■□ 22.9
CDC40O60508 PTMA-212ENST00000481928 1635 ntTSL 315.25■□□□□ 0.032e-7■■■■□ 22.9
CDC40O60508 PTMA-211ENST00000468027 621 ntTSL 1 (best)11.86□□□□□ -0.512e-7■■■■□ 22.9
CDC40O60508 PTMA-209ENST00000466801 784 ntTSL 59.99□□□□□ -0.812e-7■■■■□ 22.9
CDC40O60508 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC9.74□□□□□ -0.852e-7■■■■□ 22.9
CDC40O60508 PTMA-203ENST00000409321 735 ntTSL 3 BASIC9.42□□□□□ -0.92e-7■■■■□ 22.9
CDC40O60508 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.92e-7■■■■□ 22.9
CDC40O60508 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC8.92□□□□□ -0.982e-7■■■■□ 22.9
CDC40O60508 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.722e-7■■■■□ 22.9
CDC40O60508 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)15.35■□□□□ 0.052e-7■■■■□ 22.9
CDC40O60508 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)13.06□□□□□ -0.322e-7■■■■□ 22.9
CDC40O60508 NELFCD-204ENST00000474543 2047 ntTSL 512.99□□□□□ -0.332e-7■■■■□ 22.9
CDC40O60508 BMP4-203ENST00000558489 605 ntTSL 313.9□□□□□ -0.181e-7■■■■□ 22.9
CDC40O60508 MAD1L1-212ENST00000450235 850 ntTSL 315.84■□□□□ 0.132e-6■■■■□ 22.9
CDC40O60508 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.624e-6■■■■□ 22.7
CDC40O60508 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.274e-6■■■■□ 22.7
CDC40O60508 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.744e-6■■■■□ 22.7
CDC40O60508 MLXIPL-207ENST00000453275 690 ntTSL 518.1■□□□□ 0.496e-8■■■■□ 22.7
CDC40O60508 MLXIPL-211ENST00000488212 534 ntTSL 29.69□□□□□ -0.866e-8■■■■□ 22.7
CDC40O60508 PFKFB4-211ENST00000471890 553 ntTSL 412.7□□□□□ -0.381e-8■■■■□ 22.7
CDC40O60508 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.033e-6■■■■□ 22.5
CDC40O60508 GPS1-225ENST00000585084 997 ntTSL 326.47■■□□□ 1.833e-8■■■■□ 22.5
CDC40O60508 GPS1-223ENST00000584229 535 ntTSL 322.83■■□□□ 1.253e-8■■■■□ 22.5
CDC40O60508 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.09■■□□□ 1.133e-8■■■■□ 22.5
CDC40O60508 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.74■□□□□ 0.753e-8■■■■□ 22.5
CDC40O60508 GPS1-209ENST00000578642 579 ntTSL 417.26■□□□□ 0.353e-8■■■■□ 22.5
CDC40O60508 GPS1-214ENST00000581418 580 ntTSL 216.96■□□□□ 0.313e-8■■■■□ 22.5
CDC40O60508 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.233e-8■■■■□ 22.5
CDC40O60508 GPS1-221ENST00000583961 581 ntTSL 516.2■□□□□ 0.183e-8■■■■□ 22.5
CDC40O60508 GPS1-212ENST00000580716 567 ntTSL 415.93■□□□□ 0.143e-8■■■■□ 22.5
CDC40O60508 GPS1-216ENST00000582327 561 ntTSL 415.93■□□□□ 0.143e-8■■■■□ 22.5
CDC40O60508 FNDC3B-207ENST00000469491 2916 ntTSL 215.54■□□□□ 0.083e-8■■■■□ 22.5
CDC40O60508 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.053e-8■■■■□ 22.5
CDC40O60508 TNS3-205ENST00000434451 560 ntTSL 515.34■□□□□ 0.053e-8■■■■□ 22.5
CDC40O60508 GPS1-213ENST00000580723 594 ntTSL 415.33■□□□□ 0.043e-8■■■■□ 22.5
CDC40O60508 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.043e-8■■■■□ 22.5
CDC40O60508 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.07■□□□□ 03e-8■■■■□ 22.5
CDC40O60508 GPS1-207ENST00000578392 552 ntTSL 415.06■□□□□ 03e-8■■■■□ 22.5
Retrieved 100 of 5,364 protein–RNA pairs in 249.9 ms