RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 PELP1Q8IZL8 1130 aaKnown RBP15.44■□□□□ 0.06
VPS13A-203ENST00000360280 DCAF8L2P0C7V8 631 aa15.02□□□□□ -0.01
VPS13A-203ENST00000360280 MYT1Q01538 1121 aa14.69□□□□□ -0.06
VPS13A-203ENST00000360280 ERICH6Q7L0X2 663 aa14.68□□□□□ -0.06
VPS13A-203ENST00000360280 CCER1Q8TC90 406 aaPredicted RBP14.68□□□□□ -0.06
VPS13A-203ENST00000360280 SUPT5HO00267 1087 aaKnown RBP14.44□□□□□ -0.1
VPS13A-203ENST00000360280 CENPBP07199 599 aaPredicted RBP14.42□□□□□ -0.1
VPS13A-203ENST00000360280 APLP2Q06481 763 aa14.38□□□□□ -0.11
VPS13A-203ENST00000360280 FAM9AQ8IZU1 332 aaPredicted RBP14.18□□□□□ -0.14
VPS13A-203ENST00000360280 NEFLP07196 543 aa14.15□□□□□ -0.14
VPS13A-203ENST00000360280 YTHDC1Q96MU7 727 aaKnown RBP14.13□□□□□ -0.15
VPS13A-203ENST00000360280 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
VPS13A-203ENST00000360280 ZEB1P37275 1124 aaPredicted RBP14.11□□□□□ -0.15
VPS13A-203ENST00000360280 SHROOM4Q9ULL8 1493 aa13.97□□□□□ -0.17
VPS13A-203ENST00000360280 DAXXQ9UER7 740 aaPredicted RBP13.96□□□□□ -0.18
VPS13A-203ENST00000360280 PCGF6Q9BYE7 350 aa13.93□□□□□ -0.18
VPS13A-203ENST00000360280 TTBK1Q5TCY1 1321 aaPredicted RBP13.88□□□□□ -0.19
VPS13A-203ENST00000360280 NISCHQ9Y2I1 1504 aa13.77□□□□□ -0.21
VPS13A-203ENST00000360280 RTL5Q5HYW3 569 aaPredicted RBP13.64□□□□□ -0.23
VPS13A-203ENST00000360280 ZNF316A6NFI3 1004 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-203ENST00000360280 ATP1B4Q9UN42 357 aaPredicted RBP13.53□□□□□ -0.24
VPS13A-203ENST00000360280 RANGAP1P46060 587 aaPredicted RBP13.48□□□□□ -0.25
VPS13A-203ENST00000360280 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
VPS13A-203ENST00000360280 UBTFP17480 764 aaKnown RBP13.4□□□□□ -0.26
VPS13A-203ENST00000360280 CLSPNQ9HAW4 1339 aa13.38□□□□□ -0.27
VPS13A-203ENST00000360280 TRIM26Q12899 539 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-203ENST00000360280 POLR3GLQ9BT43 218 aa13.25□□□□□ -0.29
VPS13A-203ENST00000360280 HRCP23327 699 aa13.24□□□□□ -0.29
VPS13A-203ENST00000360280 GLIPR1L2Q4G1C9 344 aa13.22□□□□□ -0.29
VPS13A-203ENST00000360280 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
VPS13A-203ENST00000360280 MYT1LQ9UL68 1186 aa13.11□□□□□ -0.31
VPS13A-203ENST00000360280 SLC4A1APQ9BWU0 796 aaKnown RBP13.1□□□□□ -0.31
VPS13A-203ENST00000360280 CDK11AQ9UQ88 783 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-203ENST00000360280 DIEXFQ68CQ4 756 aaKnown RBP13.08□□□□□ -0.32
VPS13A-203ENST00000360280 ANP32BQ92688 251 aaKnown RBP13.05□□□□□ -0.32
VPS13A-203ENST00000360280 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
VPS13A-203ENST00000360280 PPARGC1BQ86YN6 1023 aaKnown RBP13.02□□□□□ -0.32
VPS13A-203ENST00000360280 ITGAEP38570 1179 aa13.02□□□□□ -0.32
VPS13A-203ENST00000360280 ANP32AP39687 249 aaKnown RBP13.01□□□□□ -0.33
VPS13A-203ENST00000360280 EIF5BO60841 1220 aaKnown RBP12.99□□□□□ -0.33
VPS13A-203ENST00000360280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.97□□□□□ -0.33
VPS13A-203ENST00000360280 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
VPS13A-203ENST00000360280 CANXP27824 592 aaKnown RBP12.92□□□□□ -0.34
VPS13A-203ENST00000360280 GTF3C3Q9Y5Q9 886 aa12.89□□□□□ -0.35
VPS13A-203ENST00000360280 CHIC1Q5VXU3 224 aa12.87□□□□□ -0.35
VPS13A-203ENST00000360280 ANP32CO43423 234 aa12.86□□□□□ -0.35
VPS13A-203ENST00000360280 BCANQ96GW7 911 aa12.85□□□□□ -0.35
VPS13A-203ENST00000360280 HSP90AA1P07900 732 aaKnown RBP12.82□□□□□ -0.36
VPS13A-203ENST00000360280 NEFMP07197 916 aa12.8□□□□□ -0.36
VPS13A-203ENST00000360280 UPF2Q9HAU5 1272 aaKnown RBP12.8□□□□□ -0.36
VPS13A-203ENST00000360280 SLC24A1O60721 1099 aa12.74□□□□□ -0.37
VPS13A-203ENST00000360280 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
VPS13A-203ENST00000360280 NPM2Q86SE8 214 aaKnown RBP12.7□□□□□ -0.38
VPS13A-203ENST00000360280 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
VPS13A-203ENST00000360280 TRIM52Q96A61 297 aa12.68□□□□□ -0.38
VPS13A-203ENST00000360280 TNNT2P45379 298 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-203ENST00000360280 CDK11BP21127 795 aaKnown RBP12.66□□□□□ -0.38
VPS13A-203ENST00000360280 NEUROD1Q13562 356 aa12.63□□□□□ -0.39
VPS13A-203ENST00000360280 ZNF326Q5BKZ1 582 aaKnown RBP12.62□□□□□ -0.39
VPS13A-203ENST00000360280 ACIN1Q9UKV3 1341 aaKnown RBP12.61□□□□□ -0.39
VPS13A-203ENST00000360280 LOC105371045A0A1W2PR82 267 aa12.56□□□□□ -0.4
VPS13A-203ENST00000360280 TRIM44Q96DX7 344 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-203ENST00000360280 NBR1Q14596 966 aa12.53□□□□□ -0.4
VPS13A-203ENST00000360280 ANP32EQ9BTT0 268 aa12.51□□□□□ -0.41
VPS13A-203ENST00000360280 ARXQ96QS3 562 aa12.49□□□□□ -0.41
VPS13A-203ENST00000360280 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-203ENST00000360280 FKBP8Q14318 412 aa12.49□□□□□ -0.41
VPS13A-203ENST00000360280 BECN1Q14457 450 aa12.43□□□□□ -0.42
VPS13A-203ENST00000360280 NCLP19338 710 aaKnown RBP12.42□□□□□ -0.42
VPS13A-203ENST00000360280 CCDC136Q96JN2 1154 aa12.42□□□□□ -0.42
VPS13A-203ENST00000360280 GOLGA6L22H0YM25 854 aa12.41□□□□□ -0.42
VPS13A-203ENST00000360280 DDRGK1Q96HY6 314 aa12.41□□□□□ -0.42
VPS13A-203ENST00000360280 MYH16Q9H6N6 1097 aa12.4□□□□□ -0.42
VPS13A-203ENST00000360280 ZRSR1Q15695 479 aaKnown RBP12.39□□□□□ -0.43
VPS13A-203ENST00000360280 HNRNPUQ00839 825 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS13A-203ENST00000360280 ERICH6BQ5W0A0 696 aa12.38□□□□□ -0.43
VPS13A-203ENST00000360280 TONSLQ96HA7 1378 aa12.37□□□□□ -0.43
VPS13A-203ENST00000360280 DNTTIP2Q5QJE6 756 aaKnown RBP12.37□□□□□ -0.43
VPS13A-203ENST00000360280 PTMAP06454 111 aaKnown RBP12.33□□□□□ -0.44
VPS13A-203ENST00000360280 GOLGA6L6A8MZA4 724 aa12.31□□□□□ -0.44
VPS13A-203ENST00000360280 FAM9BQ8IZU0 186 aa12.27□□□□□ -0.44
VPS13A-203ENST00000360280 WDR43Q15061 677 aaKnown RBP eCLIP12.27□□□□□ -0.44
VPS13A-203ENST00000360280 NAP1L5Q96NT1 182 aaPredicted RBP12.27□□□□□ -0.45
VPS13A-203ENST00000360280 TMC1Q8TDI8 760 aa12.27□□□□□ -0.45
VPS13A-203ENST00000360280 CASC1Q6TDU7 716 aa12.26□□□□□ -0.45
VPS13A-203ENST00000360280 CHAF1AQ13111 956 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-203ENST00000360280 NRDCO43847 1150 aa12.23□□□□□ -0.45
VPS13A-203ENST00000360280 ESF1Q9H501 851 aaKnown RBP12.21□□□□□ -0.45
VPS13A-203ENST00000360280 PPM1GO15355 546 aaPredicted RBP12.2□□□□□ -0.46
VPS13A-203ENST00000360280 L1TD1Q5T7N2 865 aaKnown RBP12.16□□□□□ -0.46
VPS13A-203ENST00000360280 SALL2Q9Y467 1007 aaPredicted RBP12.15□□□□□ -0.46
VPS13A-203ENST00000360280 STAG3Q9UJ98 1225 aa12.15□□□□□ -0.46
VPS13A-203ENST00000360280 DCAF1Q9Y4B6 1507 aa12.14□□□□□ -0.47
VPS13A-203ENST00000360280 MSNP26038 577 aaKnown RBP12.13□□□□□ -0.47
VPS13A-203ENST00000360280 MRS2Q9HD23 443 aa12.12□□□□□ -0.47
VPS13A-203ENST00000360280 DDX10Q13206 875 aaKnown RBP12.12□□□□□ -0.47
VPS13A-203ENST00000360280 CCDC180Q9P1Z9 1646 aa12.12□□□□□ -0.47
VPS13A-203ENST00000360280 ZNF777Q9ULD5 760 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-203ENST00000360280 FBLN2P98095 1184 aa12.09□□□□□ -0.47
VPS13A-203ENST00000360280 FTSJ3Q8IY81 847 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms