RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 DCAF8L2P0C7V8 631 aa20.92■□□□□ 0.94
VPS13A-204ENST00000376634 PELP1Q8IZL8 1130 aaKnown RBP20.32■□□□□ 0.84
VPS13A-204ENST00000376634 SUPT5HO00267 1087 aaKnown RBP19.78■□□□□ 0.76
VPS13A-204ENST00000376634 EHMT2Q96KQ7 1210 aa19.5■□□□□ 0.71
VPS13A-204ENST00000376634 APLP2Q06481 763 aa19.5■□□□□ 0.71
VPS13A-204ENST00000376634 ERICH6Q7L0X2 663 aa19.43■□□□□ 0.7
VPS13A-204ENST00000376634 SHROOM4Q9ULL8 1493 aa19.38■□□□□ 0.69
VPS13A-204ENST00000376634 FAM9AQ8IZU1 332 aaPredicted RBP19.35■□□□□ 0.69
VPS13A-204ENST00000376634 CCER1Q8TC90 406 aaPredicted RBP19.32■□□□□ 0.68
VPS13A-204ENST00000376634 NISCHQ9Y2I1 1504 aa19.16■□□□□ 0.66
VPS13A-204ENST00000376634 MYT1Q01538 1121 aa19.09■□□□□ 0.65
VPS13A-204ENST00000376634 CENPBP07199 599 aaPredicted RBP19.03■□□□□ 0.64
VPS13A-204ENST00000376634 TTBK1Q5TCY1 1321 aaPredicted RBP18.96■□□□□ 0.63
VPS13A-204ENST00000376634 NEFLP07196 543 aa18.83■□□□□ 0.6
VPS13A-204ENST00000376634 PCGF6Q9BYE7 350 aa18.82■□□□□ 0.6
VPS13A-204ENST00000376634 ZEB1P37275 1124 aaPredicted RBP18.73■□□□□ 0.59
VPS13A-204ENST00000376634 RANGAP1P46060 587 aaPredicted RBP18.67■□□□□ 0.58
VPS13A-204ENST00000376634 ATP1B4Q9UN42 357 aaPredicted RBP18.65■□□□□ 0.58
VPS13A-204ENST00000376634 DAXXQ9UER7 740 aaPredicted RBP18.56■□□□□ 0.56
VPS13A-204ENST00000376634 YTHDC1Q96MU7 727 aaKnown RBP18.53■□□□□ 0.56
VPS13A-204ENST00000376634 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
VPS13A-204ENST00000376634 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
VPS13A-204ENST00000376634 MYT1LQ9UL68 1186 aa18.11■□□□□ 0.49
VPS13A-204ENST00000376634 POLR3GLQ9BT43 218 aa18.1■□□□□ 0.49
VPS13A-204ENST00000376634 ZNF316A6NFI3 1004 aaPredicted RBP18.09■□□□□ 0.49
VPS13A-204ENST00000376634 RTL5Q5HYW3 569 aaPredicted RBP18.04■□□□□ 0.48
VPS13A-204ENST00000376634 SLC4A1APQ9BWU0 796 aaKnown RBP17.94■□□□□ 0.46
VPS13A-204ENST00000376634 CLSPNQ9HAW4 1339 aa17.93■□□□□ 0.46
VPS13A-204ENST00000376634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
VPS13A-204ENST00000376634 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
VPS13A-204ENST00000376634 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
VPS13A-204ENST00000376634 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
VPS13A-204ENST00000376634 ITGAEP38570 1179 aa17.86■□□□□ 0.45
VPS13A-204ENST00000376634 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
VPS13A-204ENST00000376634 CNGB1Q14028 1251 aaPredicted RBP17.82■□□□□ 0.44
VPS13A-204ENST00000376634 HRCP23327 699 aa17.69■□□□□ 0.42
VPS13A-204ENST00000376634 ZBTB47Q9UFB7 747 aaPredicted RBP17.64■□□□□ 0.41
VPS13A-204ENST00000376634 DIEXFQ68CQ4 756 aaKnown RBP17.46■□□□□ 0.39
VPS13A-204ENST00000376634 CANXP27824 592 aaKnown RBP17.43■□□□□ 0.38
VPS13A-204ENST00000376634 SLC24A1O60721 1099 aa17.43■□□□□ 0.38
VPS13A-204ENST00000376634 FAM50AQ14320 339 aaKnown RBP17.41■□□□□ 0.38
VPS13A-204ENST00000376634 CDK11AQ9UQ88 783 aaPredicted RBP17.37■□□□□ 0.37
VPS13A-204ENST00000376634 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
VPS13A-204ENST00000376634 TRIM52Q96A61 297 aa17.34■□□□□ 0.37
VPS13A-204ENST00000376634 NEFMP07197 916 aa17.31■□□□□ 0.36
VPS13A-204ENST00000376634 ANP32CO43423 234 aa17.3■□□□□ 0.36
VPS13A-204ENST00000376634 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
VPS13A-204ENST00000376634 BCANQ96GW7 911 aa17.28■□□□□ 0.36
VPS13A-204ENST00000376634 GLIPR1L2Q4G1C9 344 aa17.27■□□□□ 0.35
VPS13A-204ENST00000376634 ANP32BQ92688 251 aaKnown RBP17.26■□□□□ 0.35
VPS13A-204ENST00000376634 NEUROD1Q13562 356 aa17.25■□□□□ 0.35
VPS13A-204ENST00000376634 ANP32AP39687 249 aaKnown RBP17.24■□□□□ 0.35
VPS13A-204ENST00000376634 LOC105371045A0A1W2PR82 267 aa17.21■□□□□ 0.35
VPS13A-204ENST00000376634 EIF5BO60841 1220 aaKnown RBP17.19■□□□□ 0.34
VPS13A-204ENST00000376634 HSP90AA1P07900 732 aaKnown RBP17.16■□□□□ 0.34
VPS13A-204ENST00000376634 GTF3C3Q9Y5Q9 886 aa17.1■□□□□ 0.33
VPS13A-204ENST00000376634 UPF2Q9HAU5 1272 aaKnown RBP17.03■□□□□ 0.32
VPS13A-204ENST00000376634 NPM2Q86SE8 214 aaKnown RBP17.02■□□□□ 0.32
VPS13A-204ENST00000376634 FBLN2P98095 1184 aa16.93■□□□□ 0.3
VPS13A-204ENST00000376634 CDK11BP21127 795 aaKnown RBP16.9■□□□□ 0.3
VPS13A-204ENST00000376634 ESF1Q9H501 851 aaKnown RBP16.89■□□□□ 0.29
VPS13A-204ENST00000376634 STAG3Q9UJ98 1225 aa16.79■□□□□ 0.28
VPS13A-204ENST00000376634 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.74■□□□□ 0.27
VPS13A-204ENST00000376634 TONSLQ96HA7 1378 aa16.73■□□□□ 0.27
VPS13A-204ENST00000376634 ARXQ96QS3 562 aa16.72■□□□□ 0.27
VPS13A-204ENST00000376634 ZNF777Q9ULD5 760 aaPredicted RBP16.72■□□□□ 0.27
VPS13A-204ENST00000376634 ARID3CA6NKF2 412 aa16.71■□□□□ 0.27
VPS13A-204ENST00000376634 NBR1Q14596 966 aa16.71■□□□□ 0.27
VPS13A-204ENST00000376634 MYH16Q9H6N6 1097 aa16.71■□□□□ 0.27
VPS13A-204ENST00000376634 ABCC9O60706 1549 aa16.69■□□□□ 0.26
VPS13A-204ENST00000376634 ACIN1Q9UKV3 1341 aaKnown RBP16.69■□□□□ 0.26
VPS13A-204ENST00000376634 TNNT2P45379 298 aaPredicted RBP16.68■□□□□ 0.26
VPS13A-204ENST00000376634 FKBP8Q14318 412 aa16.66■□□□□ 0.26
VPS13A-204ENST00000376634 PLPPR3Q6T4P5 718 aa16.64■□□□□ 0.25
VPS13A-204ENST00000376634 HNRNPUQ00839 825 aaKnown RBP eCLIP16.63■□□□□ 0.25
VPS13A-204ENST00000376634 PABPN1Q86U42 306 aaKnown RBP eCLIP16.63■□□□□ 0.252e-6■□□□□ 9.6
VPS13A-204ENST00000376634 CHGAP10645 457 aaKnown RBP16.62■□□□□ 0.25
VPS13A-204ENST00000376634 CCDC136Q96JN2 1154 aa16.62■□□□□ 0.25
VPS13A-204ENST00000376634 P3H3Q8IVL6 736 aa16.6■□□□□ 0.25
VPS13A-204ENST00000376634 SCRIBQ14160 1630 aa16.58■□□□□ 0.25
VPS13A-204ENST00000376634 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.25
VPS13A-204ENST00000376634 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.25
VPS13A-204ENST00000376634 FAM9BQ8IZU0 186 aa16.58■□□□□ 0.24
VPS13A-204ENST00000376634 A0A0G2JS52 829 aa16.57■□□□□ 0.24
VPS13A-204ENST00000376634 TMC1Q8TDI8 760 aa16.55■□□□□ 0.24
VPS13A-204ENST00000376634 NCLP19338 710 aaKnown RBP16.54■□□□□ 0.24
VPS13A-204ENST00000376634 TRIM44Q96DX7 344 aaPredicted RBP16.54■□□□□ 0.24
VPS13A-204ENST00000376634 BECN1Q14457 450 aa16.53■□□□□ 0.24
VPS13A-204ENST00000376634 SALL2Q9Y467 1007 aaPredicted RBP16.52■□□□□ 0.24
VPS13A-204ENST00000376634 ZRSR1Q15695 479 aaKnown RBP16.52■□□□□ 0.23
VPS13A-204ENST00000376634 GOLGA6L22H0YM25 854 aa16.49■□□□□ 0.23
VPS13A-204ENST00000376634 ANP32EQ9BTT0 268 aa16.47■□□□□ 0.23
VPS13A-204ENST00000376634 DDRGK1Q96HY6 314 aa16.45■□□□□ 0.22
VPS13A-204ENST00000376634 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS13A-204ENST00000376634 CASC1Q6TDU7 716 aa16.44■□□□□ 0.22
VPS13A-204ENST00000376634 PTMAP06454 111 aaKnown RBP16.42■□□□□ 0.22
VPS13A-204ENST00000376634 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.42■□□□□ 0.224e-6■■□□□ 11.8
VPS13A-204ENST00000376634 DDX10Q13206 875 aaKnown RBP16.41■□□□□ 0.22
VPS13A-204ENST00000376634 C14orf37Q86TY3 774 aa16.38■□□□□ 0.21
VPS13A-204ENST00000376634 DNTTIP2Q5QJE6 756 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms