Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 AL359258.2-201ENST00000564063 1566 ntBASIC24.63■■□□□ 1.53
CDX4O14627 THA1P-201ENST00000590384 1145 ntBASIC24.62■■□□□ 1.53
CDX4O14627 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX4O14627 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CDX4O14627 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.61■■□□□ 1.53
CDX4O14627 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.61■■□□□ 1.53
CDX4O14627 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CDX4O14627 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.61■■□□□ 1.53
CDX4O14627 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CDX4O14627 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.6■■□□□ 1.53
CDX4O14627 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.6■■□□□ 1.53
CDX4O14627 RAP2CP1-202ENST00000605179 643 ntBASIC24.6■■□□□ 1.53
CDX4O14627 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.6■■□□□ 1.53
CDX4O14627 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
CDX4O14627 GUSBP5-201ENST00000418136 578 ntBASIC24.59■■□□□ 1.53
CDX4O14627 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX4O14627 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.59■■□□□ 1.53
CDX4O14627 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CDX4O14627 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.59■■□□□ 1.53
CDX4O14627 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX4O14627 YBX1P4-201ENST00000392794 808 ntBASIC24.58■■□□□ 1.53
CDX4O14627 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.58■■□□□ 1.53
CDX4O14627 AC093536.1-201ENST00000569153 554 ntBASIC24.58■■□□□ 1.53
CDX4O14627 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.57■■□□□ 1.52
CDX4O14627 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CDX4O14627 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.57■■□□□ 1.52
CDX4O14627 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
CDX4O14627 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.57■■□□□ 1.52
CDX4O14627 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.57■■□□□ 1.52
CDX4O14627 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CDX4O14627 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CDX4O14627 OR2A1-AS1-204ENST00000470435 602 ntBASIC24.56■■□□□ 1.52
CDX4O14627 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CDX4O14627 PVT1_1.1-201ENST00000615125 194 ntBASIC24.56■■□□□ 1.52
CDX4O14627 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CDX4O14627 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CDX4O14627 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.55■■□□□ 1.52
CDX4O14627 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CDX4O14627 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.55■■□□□ 1.52
CDX4O14627 AC139795.1-202ENST00000500444 432 ntBASIC24.55■■□□□ 1.52
CDX4O14627 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CDX4O14627 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.54■■□□□ 1.52
CDX4O14627 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
CDX4O14627 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
CDX4O14627 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.54■■□□□ 1.52
CDX4O14627 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CDX4O14627 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC24.54■■□□□ 1.52
CDX4O14627 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CDX4O14627 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.53■■□□□ 1.52
CDX4O14627 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CDX4O14627 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
CDX4O14627 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CDX4O14627 MIR6765-201ENST00000614092 87 ntBASIC24.53■■□□□ 1.52
CDX4O14627 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.53■■□□□ 1.52
CDX4O14627 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
CDX4O14627 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
CDX4O14627 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CDX4O14627 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CDX4O14627 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CDX4O14627 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
CDX4O14627 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CDX4O14627 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
CDX4O14627 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.51■■□□□ 1.51
CDX4O14627 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CDX4O14627 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC24.5■■□□□ 1.51
CDX4O14627 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDX4O14627 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.5■■□□□ 1.51
CDX4O14627 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CDX4O14627 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDX4O14627 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDX4O14627 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDX4O14627 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CDX4O14627 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CDX4O14627 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.48■■□□□ 1.51
CDX4O14627 MIR4508-201ENST00000584178 70 ntBASIC24.48■■□□□ 1.51
CDX4O14627 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDX4O14627 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.47■■□□□ 1.51
CDX4O14627 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CDX4O14627 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.47■■□□□ 1.51
CDX4O14627 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.47■■□□□ 1.51
CDX4O14627 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC24.47■■□□□ 1.51
CDX4O14627 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDX4O14627 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDX4O14627 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.46■■□□□ 1.51
CDX4O14627 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.46■■□□□ 1.51
CDX4O14627 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.46■■□□□ 1.51
CDX4O14627 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CDX4O14627 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDX4O14627 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CDX4O14627 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CDX4O14627 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.45■■□□□ 1.5
CDX4O14627 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.45■■□□□ 1.5
CDX4O14627 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CDX4O14627 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.5
CDX4O14627 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CDX4O14627 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.45■■□□□ 1.5
CDX4O14627 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.45■■□□□ 1.5
CDX4O14627 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX4O14627 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX4O14627 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms