Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.25■□□□□ 0.35
CKS1BP61024 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CKS1BP61024 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CKS1BP61024 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CKS1BP61024 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CKS1BP61024 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CKS1BP61024 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CKS1BP61024 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.23■□□□□ 0.35
CKS1BP61024 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CKS1BP61024 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CKS1BP61024 AL121749.1-202ENST00000609313 2153 ntBASIC17.22■□□□□ 0.35
CKS1BP61024 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CKS1BP61024 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CKS1BP61024 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CKS1BP61024 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CKS1BP61024 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CKS1BP61024 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CKS1BP61024 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CKS1BP61024 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CKS1BP61024 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CKS1BP61024 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CKS1BP61024 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CKS1BP61024 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CKS1BP61024 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CKS1BP61024 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CKS1BP61024 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CKS1BP61024 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CKS1BP61024 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC17.2■□□□□ 0.34
CKS1BP61024 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CKS1BP61024 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CKS1BP61024 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC17.19■□□□□ 0.34
CKS1BP61024 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CKS1BP61024 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC17.19■□□□□ 0.34
CKS1BP61024 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC17.19■□□□□ 0.34
CKS1BP61024 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC17.19■□□□□ 0.34
CKS1BP61024 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CKS1BP61024 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.18■□□□□ 0.34
CKS1BP61024 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CKS1BP61024 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CKS1BP61024 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CKS1BP61024 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 AC093323.1-202ENST00000635031 2045 ntBASIC17.16■□□□□ 0.34
CKS1BP61024 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CKS1BP61024 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CKS1BP61024 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CKS1BP61024 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CKS1BP61024 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC17.15■□□□□ 0.34
CKS1BP61024 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CKS1BP61024 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CKS1BP61024 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CKS1BP61024 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CKS1BP61024 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CKS1BP61024 AP004833.2-201ENST00000532228 1454 ntBASIC17.14■□□□□ 0.33
CKS1BP61024 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC17.14■□□□□ 0.33
CKS1BP61024 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC17.14■□□□□ 0.33
CKS1BP61024 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CKS1BP61024 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CKS1BP61024 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC17.14■□□□□ 0.33
CKS1BP61024 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CKS1BP61024 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CKS1BP61024 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC17.13■□□□□ 0.33
CKS1BP61024 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC17.13■□□□□ 0.33
CKS1BP61024 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms