Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 DVL1-203ENST00000472445 639 ntTSL 216.77■□□□□ 0.282e-6■■■■□ 23.6
CDC40O60508 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.032e-6■■■■□ 23.6
CDC40O60508 MGRN1-208ENST00000587747 1898 ntTSL 515.44■□□□□ 0.061e-6■■■■□ 23.6
CDC40O60508 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.011e-6■■■■□ 23.6
CDC40O60508 MGRN1-204ENST00000536343 1575 ntTSL 214.72□□□□□ -0.051e-6■■■■□ 23.6
CDC40O60508 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.141e-6■■■■□ 23.6
CDC40O60508 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.171e-6■■■■□ 23.6
CDC40O60508 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.181e-6■■■■□ 23.6
CDC40O60508 MGRN1-213ENST00000590790 994 ntTSL 513.53□□□□□ -0.241e-6■■■■□ 23.6
CDC40O60508 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC12.66□□□□□ -0.381e-6■■■■□ 23.6
CDC40O60508 MGRN1-209ENST00000588015 651 ntTSL 511.18□□□□□ -0.621e-6■■■■□ 23.6
CDC40O60508 MGRN1-212ENST00000590457 552 ntTSL 310.34□□□□□ -0.751e-6■■■■□ 23.6
CDC40O60508 MGRN1-207ENST00000587145 577 ntTSL 410.34□□□□□ -0.751e-6■■■■□ 23.6
CDC40O60508 MGRN1-217ENST00000593224 498 ntTSL 510.02□□□□□ -0.811e-6■■■■□ 23.6
CDC40O60508 SLC13A5-212ENST00000576323 574 ntTSL 415□□□□□ -0.015e-22■■■■□ 23.4
CDC40O60508 SLC13A5-206ENST00000572352 538 ntTSL 414.23□□□□□ -0.135e-22■■■■□ 23.4
CDC40O60508 SLC13A5-211ENST00000575230 547 ntTSL 514.04□□□□□ -0.165e-22■■■■□ 23.4
CDC40O60508 SLC13A5-205ENST00000572094 986 ntTSL 514.04□□□□□ -0.165e-22■■■■□ 23.4
CDC40O60508 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.238e-7■■■■□ 23.4
CDC40O60508 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.138e-7■■■■□ 23.4
CDC40O60508 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.49■□□□□ 0.078e-7■■■■□ 23.4
CDC40O60508 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.594e-6■■■■□ 23.3
CDC40O60508 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.55■□□□□ 0.564e-6■■■■□ 23.3
CDC40O60508 NXN-206ENST00000571684 1159 ntTSL 316.87■□□□□ 0.294e-6■■■■□ 23.3
CDC40O60508 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.09□□□□□ -0.154e-6■■■■□ 23.3
CDC40O60508 GNAS-244ENST00000485673 715 ntTSL 525.59■■□□□ 1.698e-9■■■■□ 23.3
CDC40O60508 GNAS-243ENST00000484504 662 ntTSL 225.59■■□□□ 1.698e-9■■■■□ 23.3
CDC40O60508 GNAS-256ENST00000603546 573 ntTSL 525.26■■□□□ 1.638e-9■■■■□ 23.3
CDC40O60508 GNAS-228ENST00000469431 702 ntTSL 524.26■■□□□ 1.478e-9■■■■□ 23.3
CDC40O60508 GNAS-257ENST00000604005 693 ntTSL 324.26■■□□□ 1.478e-9■■■■□ 23.3
CDC40O60508 GNAS-235ENST00000478585 543 ntTSL 224.26■■□□□ 1.478e-9■■■■□ 23.3
CDC40O60508 GNAS-229ENST00000470512 913 ntTSL 523.31■■□□□ 1.328e-9■■■■□ 23.3
CDC40O60508 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.29■■□□□ 1.328e-9■■■■□ 23.3
CDC40O60508 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.29■■□□□ 1.328e-9■■■■□ 23.3
CDC40O60508 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.328e-9■■■■□ 23.3
CDC40O60508 GNAS-224ENST00000464960 986 ntTSL 223.27■■□□□ 1.328e-9■■■■□ 23.3
CDC40O60508 GNAS-237ENST00000480232 893 ntTSL 523.09■■□□□ 1.298e-9■■■■□ 23.3
CDC40O60508 GNAS-233ENST00000476935 828 ntTSL 321.93■■□□□ 1.18e-9■■■■□ 23.3
CDC40O60508 GNAS-234ENST00000477931 1663 ntTSL 1 (best)21.46■■□□□ 1.038e-9■■■■□ 23.3
CDC40O60508 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.928e-9■■■■□ 23.3
CDC40O60508 GNAS-248ENST00000488652 953 ntTSL 519.65■□□□□ 0.748e-9■■■■□ 23.3
CDC40O60508 GNAS-238ENST00000480975 1534 ntTSL 517.97■□□□□ 0.478e-9■■■■□ 23.3
CDC40O60508 GNAS-240ENST00000481768 1903 ntTSL 1 (best)17.8■□□□□ 0.448e-9■■■■□ 23.3
CDC40O60508 GNAS-226ENST00000467321 733 ntTSL 517.51■□□□□ 0.398e-9■■■■□ 23.3
CDC40O60508 GNAS-220ENST00000461152 278 ntTSL 517.01■□□□□ 0.318e-9■■■■□ 23.3
CDC40O60508 GNAS-250ENST00000491348 1068 ntTSL 316.71■□□□□ 0.278e-9■■■■□ 23.3
CDC40O60508 GNAS-230ENST00000472183 911 ntTSL 316.71■□□□□ 0.278e-9■■■■□ 23.3
CDC40O60508 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.86□□□□□ -0.038e-9■■■■□ 23.3
CDC40O60508 GNAS-223ENST00000464788 583 ntTSL 214.6□□□□□ -0.078e-9■■■■□ 23.3
CDC40O60508 GNAS-249ENST00000490374 675 ntTSL 313.82□□□□□ -0.28e-9■■■■□ 23.3
CDC40O60508 GNAS-241ENST00000482112 704 ntTSL 313.31□□□□□ -0.288e-9■■■■□ 23.3
CDC40O60508 GNAS-221ENST00000462499 492 ntTSL 213.31□□□□□ -0.288e-9■■■■□ 23.3
CDC40O60508 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.88□□□□□ -0.358e-9■■■■□ 23.3
CDC40O60508 GNAS-222ENST00000464624 3764 ntTSL 512.7□□□□□ -0.388e-9■■■■□ 23.3
CDC40O60508 GNAS-206ENST00000349036 581 ntTSL 512.25□□□□□ -0.458e-9■■■■□ 23.3
CDC40O60508 GNAS-219ENST00000453292 632 ntTSL 512.06□□□□□ -0.488e-9■■■■□ 23.3
CDC40O60508 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC11.72□□□□□ -0.538e-9■■■■□ 23.3
CDC40O60508 GNAS-209ENST00000371081 730 ntTSL 2 BASIC10.97□□□□□ -0.658e-9■■■■□ 23.3
CDC40O60508 GNAS-252ENST00000493744 812 ntTSL 210.85□□□□□ -0.678e-9■■■■□ 23.3
CDC40O60508 GNAS-239ENST00000481039 756 ntTSL 510.59□□□□□ -0.718e-9■■■■□ 23.3
CDC40O60508 GNAS-205ENST00000338783 641 ntTSL 310.53□□□□□ -0.728e-9■■■■□ 23.3
CDC40O60508 GNAS-217ENST00000423897 736 ntTSL 310.53□□□□□ -0.728e-9■■■■□ 23.3
CDC40O60508 GNAS-247ENST00000488546 897 ntTSL 510.15□□□□□ -0.788e-9■■■■□ 23.3
CDC40O60508 GNAS-216ENST00000419558 729 ntTSL 310.02□□□□□ -0.818e-9■■■■□ 23.3
CDC40O60508 GNAS-208ENST00000371075 2551 ntTSL 1 (best) BASIC9.61□□□□□ -0.878e-9■■■■□ 23.3
CDC40O60508 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC9.12□□□□□ -0.958e-9■■■■□ 23.3
CDC40O60508 GNAS-218ENST00000450130 595 ntTSL 58.73□□□□□ -1.018e-9■■■■□ 23.3
CDC40O60508 GNAS-227ENST00000468895 583 ntTSL 37.81□□□□□ -1.168e-9■■■■□ 23.3
CDC40O60508 GNAS-251ENST00000492907 790 ntTSL 37.81□□□□□ -1.168e-9■■■■□ 23.3
CDC40O60508 GNAS-225ENST00000467227 543 ntTSL 37.7□□□□□ -1.188e-9■■■■□ 23.3
CDC40O60508 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.57□□□□□ -1.688e-9■■■■□ 23.3
CDC40O60508 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 02e-10■■■■□ 23.3
CDC40O60508 CCNL2-210ENST00000473872 557 ntTSL 211.79□□□□□ -0.521e-14■■■■□ 23.1
CDC40O60508 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.47■□□□□ 0.234e-6■■■■□ 23.1
CDC40O60508 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.334e-6■■■■□ 23.1
CDC40O60508 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.44e-6■■■■□ 23.1
CDC40O60508 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.081e-6■■■■□ 23.1
CDC40O60508 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.08■□□□□ 0.161e-6■■■■□ 23.1
CDC40O60508 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.382e-6■■■■□ 23.1
CDC40O60508 RANBP1-210ENST00000435265 1879 ntTSL 217.8■□□□□ 0.442e-6■■■■□ 23.1
CDC40O60508 RANBP1-207ENST00000423859 832 ntTSL 316.87■□□□□ 0.292e-6■■■■□ 23.1
CDC40O60508 RANBP1-205ENST00000418705 932 ntTSL 315.34■□□□□ 0.052e-6■■■■□ 23.1
CDC40O60508 RANBP1-203ENST00000411892 584 ntTSL 213.56□□□□□ -0.242e-6■■■■□ 23.1
CDC40O60508 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.35□□□□□ -0.272e-6■■■■□ 23.1
CDC40O60508 RANBP1-211ENST00000448394 688 ntTSL 213.29□□□□□ -0.282e-6■■■■□ 23.1
CDC40O60508 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.332e-6■■■■□ 23.1
CDC40O60508 PDE9A-214ENST00000460905 715 ntTSL 521.17■□□□□ 0.981e-6■■■■□ 23
CDC40O60508 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.81■□□□□ 0.61e-6■■■■□ 23
CDC40O60508 PDE9A-225ENST00000490803 1865 ntTSL 1 (best)17.35■□□□□ 0.371e-6■■■■□ 23
CDC40O60508 PDE9A-227ENST00000495521 1565 ntTSL 1 (best)17.28■□□□□ 0.361e-6■■■■□ 23
CDC40O60508 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.11■□□□□ 0.331e-6■■■■□ 23
CDC40O60508 PDE9A-216ENST00000462571 1784 ntTSL 1 (best)17.11■□□□□ 0.331e-6■■■■□ 23
CDC40O60508 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.9■□□□□ 0.31e-6■■■■□ 23
CDC40O60508 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.85■□□□□ 0.291e-6■■■■□ 23
CDC40O60508 PDE9A-215ENST00000460989 1521 ntTSL 1 (best)16.65■□□□□ 0.261e-6■■■■□ 23
CDC40O60508 PDE9A-221ENST00000470987 1954 ntTSL 1 (best)16.65■□□□□ 0.261e-6■■■■□ 23
CDC40O60508 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.86■□□□□ 0.131e-6■■■■□ 23
CDC40O60508 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.84■□□□□ 0.131e-6■■■■□ 23
CDC40O60508 PDE9A-220ENST00000468805 1721 ntTSL 1 (best)15.83■□□□□ 0.131e-6■■■■□ 23
CDC40O60508 PDE9A-228ENST00000497805 1908 ntTSL 1 (best)15.33■□□□□ 0.041e-6■■■■□ 23
Retrieved 100 of 5,364 protein–RNA pairs in 96.1 ms