RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
SDC1-201ENST00000254351 CCDC180Q9P1Z9 1646 aa24.6■■□□□ 1.53
SDC1-201ENST00000254351 SHROOM4Q9ULL8 1493 aa24.58■■□□□ 1.53
SDC1-201ENST00000254351 SUPT5HO00267 1087 aaKnown RBP24.48■■□□□ 1.51
SDC1-201ENST00000254351 HRCP23327 699 aa24.2■■□□□ 1.46
SDC1-201ENST00000254351 PPARGC1BQ86YN6 1023 aaKnown RBP24.19■■□□□ 1.46
SDC1-201ENST00000254351 PCGF6Q9BYE7 350 aa24.15■■□□□ 1.46
SDC1-201ENST00000254351 MYO15BQ96JP2 1530 aa23.72■■□□□ 1.39
SDC1-201ENST00000254351 CHIC1Q5VXU3 224 aa23.63■■□□□ 1.37
SDC1-201ENST00000254351 ZCCHC6Q5VYS8 1495 aaKnown RBP23.6■■□□□ 1.37
SDC1-201ENST00000254351 LOC105371045A0A1W2PR82 267 aa23.44■■□□□ 1.34
SDC1-201ENST00000254351 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
SDC1-201ENST00000254351 ABCC9O60706 1549 aa23.38■■□□□ 1.33
SDC1-201ENST00000254351 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
SDC1-201ENST00000254351 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
SDC1-201ENST00000254351 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
SDC1-201ENST00000254351 TRIM26Q12899 539 aaPredicted RBP22.99■■□□□ 1.27
SDC1-201ENST00000254351 NACADO15069 1562 aa22.96■■□□□ 1.27
SDC1-201ENST00000254351 PELP1Q8IZL8 1130 aaKnown RBP22.93■■□□□ 1.26
SDC1-201ENST00000254351 RB1CC1Q8TDY2 1594 aa22.79■■□□□ 1.24
SDC1-201ENST00000254351 FAM9AQ8IZU1 332 aaPredicted RBP22.79■■□□□ 1.24
SDC1-201ENST00000254351 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
SDC1-201ENST00000254351 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
SDC1-201ENST00000254351 NEUROD1Q13562 356 aa22.48■■□□□ 1.19
SDC1-201ENST00000254351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.42■■□□□ 1.18
SDC1-201ENST00000254351 GTF3C3Q9Y5Q9 886 aa22.4■■□□□ 1.18
SDC1-201ENST00000254351 TTBK1Q5TCY1 1321 aaPredicted RBP22.4■■□□□ 1.18
SDC1-201ENST00000254351 TRIM41Q8WV44 630 aa22.39■■□□□ 1.17
SDC1-201ENST00000254351 ACIN1Q9UKV3 1341 aaKnown RBP22.37■■□□□ 1.17
SDC1-201ENST00000254351 UNC13AQ9UPW8 1703 aa22.29■■□□□ 1.16
SDC1-201ENST00000254351 CCER1Q8TC90 406 aaPredicted RBP22.29■■□□□ 1.16
SDC1-201ENST00000254351 YTHDC1Q96MU7 727 aaKnown RBP22.21■■□□□ 1.15
SDC1-201ENST00000254351 DIEXFQ68CQ4 756 aaKnown RBP22.15■■□□□ 1.14
SDC1-201ENST00000254351 CENPBP07199 599 aaPredicted RBP22.1■■□□□ 1.13
SDC1-201ENST00000254351 BICRAQ9NZM4 1560 aa22.1■■□□□ 1.13
SDC1-201ENST00000254351 PABPN1Q86U42 306 aaKnown RBP eCLIP22■■□□□ 1.11
SDC1-201ENST00000254351 MYT1Q01538 1121 aa21.86■■□□□ 1.09
SDC1-201ENST00000254351 CECR2Q9BXF3 1484 aa21.84■■□□□ 1.09
SDC1-201ENST00000254351 RSF1Q96T23 1441 aaPredicted RBP21.74■■□□□ 1.07
SDC1-201ENST00000254351 BAZ1AQ9NRL2 1556 aaPredicted RBP21.73■■□□□ 1.07
SDC1-201ENST00000254351 MROH2BQ7Z745 1585 aa21.7■■□□□ 1.06
SDC1-201ENST00000254351 MIER1Q8N108 512 aa21.65■■□□□ 1.06
SDC1-201ENST00000254351 SMARCA4P51532 1647 aa21.64■■□□□ 1.06
SDC1-201ENST00000254351 ZNF316A6NFI3 1004 aaPredicted RBP21.61■■□□□ 1.05
SDC1-201ENST00000254351 HNRNPUL2Q1KMD3 747 aaKnown RBP21.52■■□□□ 1.04
SDC1-201ENST00000254351 WIZO95785 1651 aa21.5■■□□□ 1.03
SDC1-201ENST00000254351 EIF4G1Q04637 1599 aaKnown RBP21.45■■□□□ 1.02
SDC1-201ENST00000254351 PEG3Q9GZU2 1588 aa21.41■■□□□ 1.02
SDC1-201ENST00000254351 UBTFP17480 764 aaKnown RBP21.39■■□□□ 1.01
SDC1-201ENST00000254351 RANGAP1P46060 587 aaPredicted RBP21.37■■□□□ 1.01
SDC1-201ENST00000254351 ATAD2BQ9ULI0 1458 aa21.34■■□□□ 1.01
SDC1-201ENST00000254351 SMARCA2P51531 1590 aa21.33■■□□□ 1
SDC1-201ENST00000254351 TOP2AP11388 1531 aaKnown RBP21.31■■□□□ 1
SDC1-201ENST00000254351 BAZ1BQ9UIG0 1483 aaKnown RBP21.2■□□□□ 0.98
SDC1-201ENST00000254351 BCANQ96GW7 911 aa21.2■□□□□ 0.98
SDC1-201ENST00000254351 NCAPD3P42695 1498 aa21.19■□□□□ 0.98
SDC1-201ENST00000254351 SUPT16HQ9Y5B9 1047 aaKnown RBP21.18■□□□□ 0.98
SDC1-201ENST00000254351 CEP162Q5TB80 1403 aa21.18■□□□□ 0.98
SDC1-201ENST00000254351 CC2D2AQ9P2K1 1620 aa21.16■□□□□ 0.98
SDC1-201ENST00000254351 HMGXB3Q12766 1538 aa21.15■□□□□ 0.98
SDC1-201ENST00000254351 SOGA1O94964 1423 aa21.07■□□□□ 0.96
SDC1-201ENST00000254351 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
SDC1-201ENST00000254351 TSHZ2Q9NRE2 1034 aa21.06■□□□□ 0.96
SDC1-201ENST00000254351 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
SDC1-201ENST00000254351 BCL11AQ9H165 835 aa21.03■□□□□ 0.96
SDC1-201ENST00000254351 ANP32EQ9BTT0 268 aa21■□□□□ 0.95
SDC1-201ENST00000254351 CSRNP3Q8WYN3 585 aa20.99■□□□□ 0.95
SDC1-201ENST00000254351 KCNH8Q96L42 1107 aa20.98■□□□□ 0.95
SDC1-201ENST00000254351 RUSC2Q8N2Y8 1516 aa20.96■□□□□ 0.95
SDC1-201ENST00000254351 APLP2Q06481 763 aa20.95■□□□□ 0.94
SDC1-201ENST00000254351 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
SDC1-201ENST00000254351 TNIKQ9UKE5 1360 aa20.87■□□□□ 0.93
SDC1-201ENST00000254351 ITGAEP38570 1179 aa20.85■□□□□ 0.93
SDC1-201ENST00000254351 FKBP8Q14318 412 aa20.82■□□□□ 0.92
SDC1-201ENST00000254351 DNAJC5BQ9UF47 199 aa20.75■□□□□ 0.91
SDC1-201ENST00000254351 HIRIP3Q9BW71 556 aaPredicted RBP20.68■□□□□ 0.9
SDC1-201ENST00000254351 CFTRP13569 1480 aa20.67■□□□□ 0.9
SDC1-201ENST00000254351 TRIM52Q96A61 297 aa20.66■□□□□ 0.9
SDC1-201ENST00000254351 CLIP1P30622 1438 aa20.64■□□□□ 0.89
SDC1-201ENST00000254351 DDX10Q13206 875 aaKnown RBP20.63■□□□□ 0.89
SDC1-201ENST00000254351 CADPSQ9ULU8 1353 aa20.63■□□□□ 0.89
SDC1-201ENST00000254351 GOLGA3Q08378 1498 aa20.62■□□□□ 0.89
SDC1-201ENST00000254351 RBM19Q9Y4C8 960 aaKnown RBP20.62■□□□□ 0.89
SDC1-201ENST00000254351 CLSPNQ9HAW4 1339 aa20.59■□□□□ 0.89
SDC1-201ENST00000254351 DHX57Q6P158 1386 aaKnown RBP20.58■□□□□ 0.88
SDC1-201ENST00000254351 NEFLP07196 543 aa20.55■□□□□ 0.88
SDC1-201ENST00000254351 KANK4Q5T7N3 995 aaPredicted RBP20.55■□□□□ 0.88
SDC1-201ENST00000254351 PRDM2Q13029 1718 aa20.54■□□□□ 0.88
SDC1-201ENST00000254351 IRX6P78412 446 aaPredicted RBP20.53■□□□□ 0.88
SDC1-201ENST00000254351 LAMC3Q9Y6N6 1575 aa20.49■□□□□ 0.87
SDC1-201ENST00000254351 NESP48681 1621 aa20.47■□□□□ 0.87
SDC1-201ENST00000254351 VPS8Q8N3P4 1428 aa20.46■□□□□ 0.87
SDC1-201ENST00000254351 MSH5O43196 834 aa20.43■□□□□ 0.86
SDC1-201ENST00000254351 EEA1Q15075 1411 aa20.42■□□□□ 0.86
SDC1-201ENST00000254351 ERICH6Q7L0X2 663 aa20.41■□□□□ 0.86
SDC1-201ENST00000254351 SIN3AQ96ST3 1273 aa20.41■□□□□ 0.86
SDC1-201ENST00000254351 RAPGEF2Q9Y4G8 1499 aa20.4■□□□□ 0.86
SDC1-201ENST00000254351 FANCD2Q9BXW9 1451 aa20.39■□□□□ 0.85
SDC1-201ENST00000254351 SYNJ1O43426 1573 aa20.39■□□□□ 0.85
SDC1-201ENST00000254351 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms