RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NISCHQ9Y2I1 1504 aa42.2■■■■■ 4.35
SDC1-203ENST00000403076 CCDC180Q9P1Z9 1646 aa37.11■■■■□ 3.53
SDC1-203ENST00000403076 ABCC9O60706 1549 aa35.75■■■■□ 3.31
SDC1-203ENST00000403076 ZCCHC6Q5VYS8 1495 aaKnown RBP35.29■■■■□ 3.24
SDC1-203ENST00000403076 DCAF8L2P0C7V8 631 aa35.21■■■■□ 3.23
SDC1-203ENST00000403076 DCAF1Q9Y4B6 1507 aa34.88■■■■□ 3.17
SDC1-203ENST00000403076 NACADO15069 1562 aa34.76■■■■□ 3.16
SDC1-203ENST00000403076 MYO15BQ96JP2 1530 aa34.73■■■■□ 3.15
SDC1-203ENST00000403076 RB1CC1Q8TDY2 1594 aa34.64■■■■□ 3.14
SDC1-203ENST00000403076 SCRIBQ14160 1630 aa34.03■■■■□ 3.04
SDC1-203ENST00000403076 SHROOM4Q9ULL8 1493 aa33.99■■■■□ 3.03
SDC1-203ENST00000403076 UNC13AQ9UPW8 1703 aa33.8■■■■□ 3
SDC1-203ENST00000403076 PABPN1Q86U42 306 aaKnown RBP eCLIP33.59■■■□□ 2.97
SDC1-203ENST00000403076 BICRAQ9NZM4 1560 aa33.52■■■□□ 2.96
SDC1-203ENST00000403076 CECR2Q9BXF3 1484 aa32.83■■■□□ 2.85
SDC1-203ENST00000403076 BAZ1AQ9NRL2 1556 aaPredicted RBP32.66■■■□□ 2.82
SDC1-203ENST00000403076 EIF4G1Q04637 1599 aaKnown RBP32.6■■■□□ 2.81
SDC1-203ENST00000403076 SMARCA4P51532 1647 aa32.58■■■□□ 2.81
SDC1-203ENST00000403076 MROH2BQ7Z745 1585 aa32.56■■■□□ 2.8
SDC1-203ENST00000403076 RSF1Q96T23 1441 aaPredicted RBP32.47■■■□□ 2.79
SDC1-203ENST00000403076 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
SDC1-203ENST00000403076 CC2D2AQ9P2K1 1620 aa32.3■■■□□ 2.76
SDC1-203ENST00000403076 WIZO95785 1651 aa32.25■■■□□ 2.75
SDC1-203ENST00000403076 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
SDC1-203ENST00000403076 SMARCA2P51531 1590 aa32.22■■■□□ 2.75
SDC1-203ENST00000403076 PEG3Q9GZU2 1588 aa32.18■■■□□ 2.74
SDC1-203ENST00000403076 DNAJC5BQ9UF47 199 aa32.11■■■□□ 2.73
SDC1-203ENST00000403076 NCAPD3P42695 1498 aa32.08■■■□□ 2.73
SDC1-203ENST00000403076 BAZ1BQ9UIG0 1483 aaKnown RBP32.04■■■□□ 2.72
SDC1-203ENST00000403076 HMGXB3Q12766 1538 aa31.97■■■□□ 2.71
SDC1-203ENST00000403076 TOP2AP11388 1531 aaKnown RBP31.92■■■□□ 2.7
SDC1-203ENST00000403076 CCDC88BA6NC98 1476 aa31.59■■■□□ 2.65
SDC1-203ENST00000403076 CADPSQ9ULU8 1353 aa31.24■■■□□ 2.59
SDC1-203ENST00000403076 CFTRP13569 1480 aa31.16■■■□□ 2.58
SDC1-203ENST00000403076 NESP48681 1621 aa31.13■■■□□ 2.57
SDC1-203ENST00000403076 LAMC3Q9Y6N6 1575 aa31.1■■■□□ 2.57
SDC1-203ENST00000403076 PDS5BQ9NTI5 1447 aa30.93■■■□□ 2.54
SDC1-203ENST00000403076 PRDM2Q13029 1718 aa30.92■■■□□ 2.54
SDC1-203ENST00000403076 FANCD2Q9BXW9 1451 aa30.87■■■□□ 2.53
SDC1-203ENST00000403076 ERCC6Q03468 1493 aa30.77■■■□□ 2.52
SDC1-203ENST00000403076 CEP164Q9UPV0 1460 aa30.76■■■□□ 2.51
SDC1-203ENST00000403076 KIF21AQ7Z4S6 1674 aa30.73■■■□□ 2.51
SDC1-203ENST00000403076 ABCC8Q09428 1581 aa30.68■■■□□ 2.5
SDC1-203ENST00000403076 WRNQ14191 1432 aaPredicted RBP eCLIP30.63■■■□□ 2.49
SDC1-203ENST00000403076 CHIC1Q5VXU3 224 aa30.62■■■□□ 2.49
SDC1-203ENST00000403076 TRIM41Q8WV44 630 aa30.54■■■□□ 2.48
SDC1-203ENST00000403076 MRC2Q9UBG0 1479 aa30.54■■■□□ 2.48
SDC1-203ENST00000403076 CUX1P39880 1505 aa30.49■■■□□ 2.47
SDC1-203ENST00000403076 URB2Q14146 1524 aaKnown RBP30.49■■■□□ 2.47
SDC1-203ENST00000403076 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
SDC1-203ENST00000403076 DNMBPQ6XZF7 1577 aa30.46■■■□□ 2.47
SDC1-203ENST00000403076 TOPBP1Q92547 1522 aa30.45■■■□□ 2.46
SDC1-203ENST00000403076 TOP2BQ02880 1626 aa30.41■■■□□ 2.46
SDC1-203ENST00000403076 THOC2Q8NI27 1593 aaKnown RBP30.41■■■□□ 2.46
SDC1-203ENST00000403076 BIVM-ERCC5R4GMW8 1640 aa30.38■■■□□ 2.45
SDC1-203ENST00000403076 WDR62O43379 1518 aa30.36■■■□□ 2.45
SDC1-203ENST00000403076 FGD5Q6ZNL6 1462 aa30.3■■■□□ 2.44
SDC1-203ENST00000403076 POLA1P09884 1462 aaPredicted RBP30.25■■■□□ 2.43
SDC1-203ENST00000403076 SOGA1O94964 1423 aa30.18■■■□□ 2.42
SDC1-203ENST00000403076 RAD54L2Q9Y4B4 1467 aa30.14■■■□□ 2.42
SDC1-203ENST00000403076 CUX2O14529 1486 aa30.11■■■□□ 2.41
SDC1-203ENST00000403076 IFT140Q96RY7 1462 aa30.07■■■□□ 2.4
SDC1-203ENST00000403076 TARBP1Q13395 1621 aaKnown RBP30.01■■■□□ 2.39
SDC1-203ENST00000403076 ABCA10Q8WWZ4 1543 aa30.01■■■□□ 2.39
SDC1-203ENST00000403076 TDRD9Q8NDG6 1382 aaKnown RBP29.95■■■□□ 2.38
SDC1-203ENST00000403076 FAM9AQ8IZU1 332 aaPredicted RBP29.95■■■□□ 2.38
SDC1-203ENST00000403076 KIF27Q86VH2 1401 aa29.94■■■□□ 2.38
SDC1-203ENST00000403076 WDR97A6NE52 1622 aa29.91■■■□□ 2.38
SDC1-203ENST00000403076 RUSC2Q8N2Y8 1516 aa29.89■■■□□ 2.38
SDC1-203ENST00000403076 ZNF608Q9ULD9 1512 aaPredicted RBP29.88■■■□□ 2.37
SDC1-203ENST00000403076 AQRO60306 1485 aaKnown RBP eCLIP29.85■■■□□ 2.372e-7■■■■■ 33.9
SDC1-203ENST00000403076 EEA1Q15075 1411 aa29.84■■■□□ 2.37
SDC1-203ENST00000403076 GAPVD1Q14C86 1478 aa29.83■■■□□ 2.37
SDC1-203ENST00000403076 ABCA5Q8WWZ7 1642 aa29.78■■■□□ 2.36
SDC1-203ENST00000403076 CSRNP3Q8WYN3 585 aa29.77■■■□□ 2.36
SDC1-203ENST00000403076 EIF4G3O43432 1585 aaKnown RBP29.76■■■□□ 2.35
SDC1-203ENST00000403076 IGF1RP08069 1367 aa29.71■■■□□ 2.35
SDC1-203ENST00000403076 GRIN2BQ13224 1484 aa29.7■■■□□ 2.35
SDC1-203ENST00000403076 ERICH3Q5RHP9 1530 aa29.65■■■□□ 2.34
SDC1-203ENST00000403076 PBRM1Q86U86 1689 aa29.65■■■□□ 2.34
SDC1-203ENST00000403076 CARMIL1Q5VZK9 1371 aa29.58■■■□□ 2.33
SDC1-203ENST00000403076 SNAPC4Q5SXM2 1469 aa29.57■■■□□ 2.32
SDC1-203ENST00000403076 EHMT2Q96KQ7 1210 aa29.55■■■□□ 2.32
SDC1-203ENST00000403076 CUL7Q14999 1698 aa29.52■■■□□ 2.32
SDC1-203ENST00000403076 MAGI1Q96QZ7 1491 aaPredicted RBP29.52■■■□□ 2.32
SDC1-203ENST00000403076 FHAD1B1AJZ9 1412 aa29.5■■■□□ 2.31
SDC1-203ENST00000403076 PRXQ9BXM0 1461 aa29.49■■■□□ 2.31
SDC1-203ENST00000403076 FBLN2P98095 1184 aa29.47■■■□□ 2.31
SDC1-203ENST00000403076 ADAMTS12P58397 1594 aa29.46■■■□□ 2.31
SDC1-203ENST00000403076 RAPGEF2Q9Y4G8 1499 aa29.46■■■□□ 2.31
SDC1-203ENST00000403076 CHMP7Q8WUX9 453 aaPredicted RBP29.45■■■□□ 2.31
SDC1-203ENST00000403076 KIF21BO75037 1637 aa29.43■■■□□ 2.3
SDC1-203ENST00000403076 LOC105371045A0A1W2PR82 267 aa29.42■■■□□ 2.3
SDC1-203ENST00000403076 SYNJ2O15056 1496 aa29.41■■■□□ 2.3
SDC1-203ENST00000403076 GOLGA3Q08378 1498 aa29.39■■■□□ 2.29
SDC1-203ENST00000403076 UBTFP17480 764 aaKnown RBP29.37■■■□□ 2.29
SDC1-203ENST00000403076 GRIN2AQ12879 1464 aa29.31■■■□□ 2.28
SDC1-203ENST00000403076 CHD1O14646 1710 aa29.24■■■□□ 2.27
SDC1-203ENST00000403076 TNIKQ9UKE5 1360 aa29.17■■■□□ 2.26
SDC1-203ENST00000403076 NUP160Q12769 1436 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms