RNA–Protein interactions for RNA: YPR028W

YOP1, Transcript of Membrane protein that interacts with Yip1p to mediate membrane traffic, yeastyeast

Gene YOP1, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YOP1YPR028W MTC1P47018 478 aaKnown RBP13.26□□□□□ -0.29
YOP1YPR028W FAP1P53971 965 aa13.01□□□□□ -0.33
YOP1YPR028W PRY3P47033 881 aa12.25□□□□□ -0.45
YOP1YPR028W AAD16Q02895 342 aa11.77□□□□□ -0.53
YOP1YPR028W PRI1P10363 409 aa11.71□□□□□ -0.53
YOP1YPR028W YCK3P39962 524 aa11.5□□□□□ -0.57
YOP1YPR028W DRS1P32892 752 aaKnown RBP11.46□□□□□ -0.57
YOP1YPR028W HAA1Q12753 694 aaKnown RBP11.46□□□□□ -0.57
YOP1YPR028W ISW2Q08773 1120 aa11.22□□□□□ -0.61
YOP1YPR028W RPG1P38249 964 aaKnown RBP11.12□□□□□ -0.63
YOP1YPR028W TSR3Q12094 313 aaKnown RBP11.01□□□□□ -0.65
YOP1YPR028W MRPL32P25348 183 aa10.61□□□□□ -0.71
YOP1YPR028W YGL015CP33199 130 aa10.45□□□□□ -0.74
YOP1YPR028W DIP2Q12220 943 aaPredicted RBP10.39□□□□□ -0.75
YOP1YPR028W RSE1Q04693 1361 aaKnown RBP10.31□□□□□ -0.76
YOP1YPR028W REB1P21538 810 aa10.09□□□□□ -0.79
YOP1YPR028W RPL17AP05740 184 aaKnown RBP10.04□□□□□ -0.8
YOP1YPR028W RPL17BP46990 184 aaKnown RBP10.04□□□□□ -0.8
YOP1YPR028W BUD31P25337 157 aaPredicted RBP9.97□□□□□ -0.81
YOP1YPR028W CDC27P38042 758 aa9.88□□□□□ -0.83
YOP1YPR028W AVT3P36062 692 aa9.74□□□□□ -0.85
YOP1YPR028W UBP10P53874 792 aaPredicted RBP9.74□□□□□ -0.85
YOP1YPR028W MAP2P38174 421 aaKnown RBP9.69□□□□□ -0.86
YOP1YPR028W YKR023WP36119 530 aaKnown RBP9.63□□□□□ -0.87
YOP1YPR028W SPT21P35209 758 aa9.51□□□□□ -0.89
YOP1YPR028W HOP09932 586 aa9.44□□□□□ -0.9
YOP1YPR028W TFC8Q12308 588 aa9.44□□□□□ -0.9
YOP1YPR028W DCD1P06773 312 aa9.42□□□□□ -0.9
YOP1YPR028W SIS1P25294 352 aaKnown RBP9.42□□□□□ -0.9
YOP1YPR028W TIF4632P39936 914 aaKnown RBP9.37□□□□□ -0.91
YOP1YPR028W UBP9P39967 754 aa9.36□□□□□ -0.91
YOP1YPR028W TGL3P40308 642 aa9.34□□□□□ -0.91
YOP1YPR028W SCY1P53009 804 aa9.33□□□□□ -0.92
YOP1YPR028W SLX5P32828 619 aaKnown RBP9.28□□□□□ -0.92
YOP1YPR028W BCH2P36122 765 aa9.1□□□□□ -0.95
YOP1YPR028W BFR2Q06631 534 aaKnown RBP9.08□□□□□ -0.96
YOP1YPR028W RIM101P33400 625 aa8.99□□□□□ -0.97
YOP1YPR028W MST1P07236 462 aa8.83□□□□□ -1
YOP1YPR028W YBL029C-AQ3E756 94 aa8.83□□□□□ -1
YOP1YPR028W BDF1P35817 686 aa8.8□□□□□ -1
YOP1YPR028W EPS1P40557 701 aa8.8□□□□□ -1
YOP1YPR028W YOR238WQ08634 303 aa8.76□□□□□ -1.01
YOP1YPR028W VNX1P42839 908 aa8.7□□□□□ -1.02
YOP1YPR028W OXP1P28273 1286 aa8.65□□□□□ -1.02
YOP1YPR028W NSR1P27476 414 aaKnown RBP RIP-Chip data8.64□□□□□ -1.03not detected
YOP1YPR028W SPP1Q03012 353 aa8.63□□□□□ -1.03
YOP1YPR028W PTP3P40048 928 aa8.58□□□□□ -1.04
YOP1YPR028W YAP5P40574 245 aa8.57□□□□□ -1.04
YOP1YPR028W YIL055CP40523 627 aaKnown RBP8.56□□□□□ -1.04
YOP1YPR028W WSC3Q12215 556 aa8.56□□□□□ -1.04
YOP1YPR028W YJL171CP46992 396 aa8.53□□□□□ -1.04
YOP1YPR028W AIR2Q12476 344 aaKnown RBP8.53□□□□□ -1.04
YOP1YPR028W BBC1P47068 1157 aa8.51□□□□□ -1.05
YOP1YPR028W TIF11P38912 153 aaKnown RBP8.48□□□□□ -1.05
YOP1YPR028W FKH1P40466 484 aa8.47□□□□□ -1.05
YOP1YPR028W RSM7P47150 247 aa8.43□□□□□ -1.06
YOP1YPR028W AI2P03876 854 aa8.42□□□□□ -1.06
YOP1YPR028W GTT3P39996 337 aa8.42□□□□□ -1.06
YOP1YPR028W LDB19Q12502 818 aa8.35□□□□□ -1.07
YOP1YPR028W BMT6Q12291 365 aa8.33□□□□□ -1.08
YOP1YPR028W ULI1P43604 169 aa8.32□□□□□ -1.08
YOP1YPR028W IOC2Q12072 812 aa8.3□□□□□ -1.08
YOP1YPR028W YAH1Q12184 172 aaKnown RBP8.28□□□□□ -1.08
YOP1YPR028W PIB1Q06651 286 aa8.22□□□□□ -1.09
YOP1YPR028W MSB4Q12317 492 aa8.18□□□□□ -1.1
YOP1YPR028W EAP1P36041 632 aaKnown RBP8.17□□□□□ -1.1
YOP1YPR028W RTG1P32607 177 aa8.12□□□□□ -1.11
YOP1YPR028W NCR1Q12200 1170 aa8.11□□□□□ -1.11
YOP1YPR028W YLR271WQ06152 274 aa8.1□□□□□ -1.11
YOP1YPR028W PSD2P53037 1138 aaKnown RBP8.08□□□□□ -1.12
YOP1YPR028W TRP5P00931 707 aaKnown RBP8.07□□□□□ -1.12
YOP1YPR028W SET4P42948 560 aa8.07□□□□□ -1.12
YOP1YPR028W YOL036WQ08206 761 aa8.07□□□□□ -1.12
YOP1YPR028W MRM1P25270 412 aa8.06□□□□□ -1.12
YOP1YPR028W SEC61P32915 480 aa8.03□□□□□ -1.12
YOP1YPR028W YNL035CP53962 389 aaKnown RBP8.03□□□□□ -1.12
YOP1YPR028W YMR1P47147 688 aaKnown RBP RIP-Chip data7.96□□□□□ -1.14not detected
YOP1YPR028W TFG1P41895 735 aaPredicted RBP7.95□□□□□ -1.14
YOP1YPR028W DBP1P24784 617 aaKnown RBP7.94□□□□□ -1.14
YOP1YPR028W VMA1P17255 1071 aaKnown RBP7.91□□□□□ -1.14
YOP1YPR028W BCK2P33306 851 aa7.9□□□□□ -1.14
YOP1YPR028W VPS29P38759 282 aa7.9□□□□□ -1.14
YOP1YPR028W YFR006WP43590 535 aa7.89□□□□□ -1.15
YOP1YPR028W SAM3Q08986 587 aa7.89□□□□□ -1.15
YOP1YPR028W SAP30P38429 201 aa7.88□□□□□ -1.15
YOP1YPR028W CHL1P22516 861 aaPredicted RBP7.85□□□□□ -1.15
YOP1YPR028W RTG3P38165 486 aa7.85□□□□□ -1.15
YOP1YPR028W DAN4P47179 1161 aa7.85□□□□□ -1.15
YOP1YPR028W JIP4Q03361 876 aa7.84□□□□□ -1.15
YOP1YPR028W STS1P38637 319 aa7.83□□□□□ -1.16
YOP1YPR028W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
YOP1YPR028W YDL129WQ07555 291 aa7.82□□□□□ -1.16
YOP1YPR028W TFA1P36100 482 aa7.8□□□□□ -1.16
YOP1YPR028W ABP1P15891 592 aaKnown RBP7.79□□□□□ -1.16
YOP1YPR028W PRE3P38624 215 aa7.79□□□□□ -1.16
YOP1YPR028W SSP1P38871 571 aa7.77□□□□□ -1.17
YOP1YPR028W CST9Q06032 482 aa7.76□□□□□ -1.17
YOP1YPR028W GYP5Q12344 894 aa7.76□□□□□ -1.17
YOP1YPR028W HTA1P04911 132 aaKnown RBP7.73□□□□□ -1.17
YOP1YPR028W HTA2P04912 132 aa7.73□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms