RNA–Protein interactions for RNA: YOR216C

RUD3, Transcript of Golgi matrix protein, yeast

Gene RUD3, Length 1,455 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUD3	YOR216C	MTC1	P47018	478 aa	Known RBP	15.55	■□□□□ 0.08
RUD3	YOR216C	FAP1	P53971	965 aa		14.57	□□□□□ -0.08
RUD3	YOR216C	DRS1	P32892	752 aa	Known RBP	13.89	□□□□□ -0.19
RUD3	YOR216C	PRY3	P47033	881 aa		13.73	□□□□□ -0.21
RUD3	YOR216C	PRI1	P10363	409 aa		13.48	□□□□□ -0.25
RUD3	YOR216C	AAD16	Q02895	342 aa		13.45	□□□□□ -0.26
RUD3	YOR216C	YCK3	P39962	524 aa		13.06	□□□□□ -0.32
RUD3	YOR216C	ISW2	Q08773	1120 aa		13	□□□□□ -0.33
RUD3	YOR216C	HAA1	Q12753	694 aa	Known RBP	12.96	□□□□□ -0.34
RUD3	YOR216C	RPG1	P38249	964 aa	Known RBP	12.85	□□□□□ -0.35
RUD3	YOR216C	TSR3	Q12094	313 aa	Known RBP	12.61	□□□□□ -0.39
RUD3	YOR216C	DIP2	Q12220	943 aa	Predicted RBP	12.37	□□□□□ -0.43
RUD3	YOR216C	MRPL32	P25348	183 aa		12.16	□□□□□ -0.46
RUD3	YOR216C	RSE1	Q04693	1361 aa	Known RBP	12.14	□□□□□ -0.47
RUD3	YOR216C	YGL015C	P33199	130 aa		11.89	□□□□□ -0.51
RUD3	YOR216C	AVT3	P36062	692 aa		11.81	□□□□□ -0.52
RUD3	YOR216C	RPL17A	P05740	184 aa	Known RBP	11.76	□□□□□ -0.53
RUD3	YOR216C	REB1	P21538	810 aa		11.76	□□□□□ -0.53
RUD3	YOR216C	RPL17B	P46990	184 aa	Known RBP	11.76	□□□□□ -0.53
RUD3	YOR216C	CDC27	P38042	758 aa		11.44	□□□□□ -0.58
RUD3	YOR216C	BFR2	Q06631	534 aa	Known RBP	11.33	□□□□□ -0.6
RUD3	YOR216C	SPT21	P35209	758 aa		11.31	□□□□□ -0.6
RUD3	YOR216C	YKR023W	P36119	530 aa	Known RBP	11.3	□□□□□ -0.6
RUD3	YOR216C	UBP10	P53874	792 aa	Predicted RBP	11.29	□□□□□ -0.6
RUD3	YOR216C	BUD31	P25337	157 aa	Predicted RBP	11.19	□□□□□ -0.62
RUD3	YOR216C	MAP2	P38174	421 aa	Known RBP	11.15	□□□□□ -0.62
RUD3	YOR216C	TFC8	Q12308	588 aa		11.06	□□□□□ -0.64
RUD3	YOR216C	HO	P09932	586 aa		10.98	□□□□□ -0.65
RUD3	YOR216C	DCD1	P06773	312 aa		10.92	□□□□□ -0.66
RUD3	YOR216C	SCY1	P53009	804 aa		10.8	□□□□□ -0.68
RUD3	YOR216C	RIM101	P33400	625 aa		10.79	□□□□□ -0.68
RUD3	YOR216C	TGL3	P40308	642 aa		10.79	□□□□□ -0.68
RUD3	YOR216C	TIF4632	P39936	914 aa	Known RBP	10.78	□□□□□ -0.68
RUD3	YOR216C	SLX5	P32828	619 aa	Known RBP	10.74	□□□□□ -0.69
RUD3	YOR216C	BCH2	P36122	765 aa		10.66	□□□□□ -0.7
RUD3	YOR216C	UBP9	P39967	754 aa		10.61	□□□□□ -0.71
RUD3	YOR216C	SIS1	P25294	352 aa	Known RBP	10.51	□□□□□ -0.73
RUD3	YOR216C	OXP1	P28273	1286 aa		10.36	□□□□□ -0.75
RUD3	YOR216C	EPS1	P40557	701 aa		10.34	□□□□□ -0.75
RUD3	YOR216C	BDF1	P35817	686 aa		10.33	□□□□□ -0.76
RUD3	YOR216C	MST1	P07236	462 aa		10.31	□□□□□ -0.76
RUD3	YOR216C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	10.21	□□□□□ -0.78	not detected
RUD3	YOR216C	YOR238W	Q08634	303 aa		10.17	□□□□□ -0.78
RUD3	YOR216C	PTP3	P40048	928 aa		10.15	□□□□□ -0.78
RUD3	YOR216C	YIL055C	P40523	627 aa	Known RBP	10.15	□□□□□ -0.78
RUD3	YOR216C	YBL029C-A	Q3E756	94 aa		10.11	□□□□□ -0.79
RUD3	YOR216C	BBC1	P47068	1157 aa		10.05	□□□□□ -0.8
RUD3	YOR216C	RSM7	P47150	247 aa		10.05	□□□□□ -0.8
RUD3	YOR216C	VNX1	P42839	908 aa		10.04	□□□□□ -0.8
RUD3	YOR216C	YAP5	P40574	245 aa		10.01	□□□□□ -0.81
RUD3	YOR216C	AI2	P03876	854 aa		9.99	□□□□□ -0.81
RUD3	YOR216C	YAH1	Q12184	172 aa	Known RBP	9.95	□□□□□ -0.82
RUD3	YOR216C	SPP1	Q03012	353 aa		9.9	□□□□□ -0.83
RUD3	YOR216C	TIF11	P38912	153 aa	Known RBP	9.82	□□□□□ -0.84
RUD3	YOR216C	WSC3	Q12215	556 aa		9.81	□□□□□ -0.84
RUD3	YOR216C	AIR2	Q12476	344 aa	Known RBP	9.81	□□□□□ -0.84
RUD3	YOR216C	FKH1	P40466	484 aa		9.79	□□□□□ -0.84
RUD3	YOR216C	YLR271W	Q06152	274 aa		9.78	□□□□□ -0.84
RUD3	YOR216C	TFA1	P36100	482 aa		9.75	□□□□□ -0.85
RUD3	YOR216C	GTT3	P39996	337 aa		9.74	□□□□□ -0.85
RUD3	YOR216C	PSD2	P53037	1138 aa	Known RBP	9.74	□□□□□ -0.85
RUD3	YOR216C	YJL171C	P46992	396 aa		9.67	□□□□□ -0.86
RUD3	YOR216C	IOC2	Q12072	812 aa		9.66	□□□□□ -0.86
RUD3	YOR216C	ULI1	P43604	169 aa		9.63	□□□□□ -0.87
RUD3	YOR216C	LDB19	Q12502	818 aa		9.63	□□□□□ -0.87
RUD3	YOR216C	MSB4	Q12317	492 aa		9.61	□□□□□ -0.87
RUD3	YOR216C	MRM1	P25270	412 aa		9.58	□□□□□ -0.88
RUD3	YOR216C	PIB1	Q06651	286 aa		9.57	□□□□□ -0.88
RUD3	YOR216C	EAP1	P36041	632 aa	Known RBP	9.54	□□□□□ -0.88
RUD3	YOR216C	BMT6	Q12291	365 aa		9.54	□□□□□ -0.88
RUD3	YOR216C	SSP1	P38871	571 aa		9.53	□□□□□ -0.88
RUD3	YOR216C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	9.49	□□□□□ -0.89	not detected
RUD3	YOR216C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	9.47	□□□□□ -0.89	not detected
RUD3	YOR216C	YOL036W	Q08206	761 aa		9.47	□□□□□ -0.89
RUD3	YOR216C	VPS29	P38759	282 aa		9.45	□□□□□ -0.9
RUD3	YOR216C	TRP5	P00931	707 aa	Known RBP	9.42	□□□□□ -0.9
RUD3	YOR216C	RTG1	P32607	177 aa		9.41	□□□□□ -0.9
RUD3	YOR216C	SET4	P42948	560 aa		9.4	□□□□□ -0.9
RUD3	YOR216C	CST9	Q06032	482 aa		9.4	□□□□□ -0.9
RUD3	YOR216C	SAM3	Q08986	587 aa		9.4	□□□□□ -0.9
RUD3	YOR216C	DBP1	P24784	617 aa	Known RBP	9.4	□□□□□ -0.91
RUD3	YOR216C	SEC61	P32915	480 aa		9.39	□□□□□ -0.91
RUD3	YOR216C	VMA1	P17255	1071 aa	Known RBP	9.38	□□□□□ -0.91
RUD3	YOR216C	RTG3	P38165	486 aa		9.38	□□□□□ -0.91
RUD3	YOR216C	YNL035C	P53962	389 aa	Known RBP	9.38	□□□□□ -0.91
RUD3	YOR216C	NCR1	Q12200	1170 aa		9.38	□□□□□ -0.91
RUD3	YOR216C	MGA2	P40578	1113 aa		9.35	□□□□□ -0.91
RUD3	YOR216C	STS1	P38637	319 aa		9.34	□□□□□ -0.91
RUD3	YOR216C	YFR006W	P43590	535 aa		9.33	□□□□□ -0.92
RUD3	YOR216C	ABP1	P15891	592 aa	Known RBP	9.26	□□□□□ -0.93
RUD3	YOR216C	DAN4	P47179	1161 aa		9.25	□□□□□ -0.93
RUD3	YOR216C	RCR1	P38212	213 aa		9.23	□□□□□ -0.93
RUD3	YOR216C	JIP4	Q03361	876 aa		9.23	□□□□□ -0.93
RUD3	YOR216C	TFG1	P41895	735 aa	Predicted RBP	9.2	□□□□□ -0.94
RUD3	YOR216C	GYP5	Q12344	894 aa		9.16	□□□□□ -0.94
RUD3	YOR216C	YDL129W	Q07555	291 aa		9.15	□□□□□ -0.95
RUD3	YOR216C	SAP30	P38429	201 aa		9.13	□□□□□ -0.95
RUD3	YOR216C	HTA1	P04911	132 aa	Known RBP	9.12	□□□□□ -0.95
RUD3	YOR216C	HTA2	P04912	132 aa		9.12	□□□□□ -0.95
RUD3	YOR216C	CHL1	P22516	861 aa	Predicted RBP	9.11	□□□□□ -0.95

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms