RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeastyeast

Gene SWM2, Length 441 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SWM2YNR004W MTC1P47018 478 aaKnown RBP15.04■□□□□ -0
SWM2YNR004W FAP1P53971 965 aa14.49□□□□□ -0.09
SWM2YNR004W PRY3P47033 881 aa13.63□□□□□ -0.23
SWM2YNR004W DRS1P32892 752 aaKnown RBP13.28□□□□□ -0.28
SWM2YNR004W AAD16Q02895 342 aa13.14□□□□□ -0.31
SWM2YNR004W PRI1P10363 409 aa13.1□□□□□ -0.31
SWM2YNR004W YCK3P39962 524 aa12.74□□□□□ -0.37
SWM2YNR004W HAA1Q12753 694 aaKnown RBP12.72□□□□□ -0.37
SWM2YNR004W ISW2Q08773 1120 aa12.67□□□□□ -0.38
SWM2YNR004W RPG1P38249 964 aaKnown RBP12.53□□□□□ -0.4
SWM2YNR004W TSR3Q12094 313 aaKnown RBP12.36□□□□□ -0.43
SWM2YNR004W MRPL32P25348 183 aa11.9□□□□□ -0.5
SWM2YNR004W DIP2Q12220 943 aaPredicted RBP11.9□□□□□ -0.5
SWM2YNR004W RSE1Q04693 1361 aaKnown RBP11.75□□□□□ -0.53
SWM2YNR004W YGL015CP33199 130 aa11.61□□□□□ -0.55
SWM2YNR004W REB1P21538 810 aa11.48□□□□□ -0.57
SWM2YNR004W RPL17AP05740 184 aaKnown RBP11.42□□□□□ -0.58
SWM2YNR004W RPL17BP46990 184 aaKnown RBP11.42□□□□□ -0.58
SWM2YNR004W AVT3P36062 692 aa11.21□□□□□ -0.61
SWM2YNR004W CDC27P38042 758 aa11.12□□□□□ -0.63
SWM2YNR004W BUD31P25337 157 aaPredicted RBP10.99□□□□□ -0.65
SWM2YNR004W UBP10P53874 792 aaPredicted RBP10.95□□□□□ -0.66
SWM2YNR004W YKR023WP36119 530 aaKnown RBP10.89□□□□□ -0.67
SWM2YNR004W MAP2P38174 421 aaKnown RBP10.89□□□□□ -0.67
SWM2YNR004W SPT21P35209 758 aa10.83□□□□□ -0.68
SWM2YNR004W HOP09932 586 aa10.7□□□□□ -0.7
SWM2YNR004W DCD1P06773 312 aa10.68□□□□□ -0.7
SWM2YNR004W TFC8Q12308 588 aa10.68□□□□□ -0.7
SWM2YNR004W BFR2Q06631 534 aaKnown RBP10.66□□□□□ -0.7
SWM2YNR004W TIF4632P39936 914 aaKnown RBP10.54□□□□□ -0.72
SWM2YNR004W SCY1P53009 804 aa10.54□□□□□ -0.72
SWM2YNR004W SLX5P32828 619 aaKnown RBP10.47□□□□□ -0.73
SWM2YNR004W TGL3P40308 642 aa10.44□□□□□ -0.74
SWM2YNR004W SIS1P25294 352 aaKnown RBP10.43□□□□□ -0.74
SWM2YNR004W UBP9P39967 754 aa10.41□□□□□ -0.74
SWM2YNR004W BCH2P36122 765 aa10.3□□□□□ -0.76
SWM2YNR004W RIM101P33400 625 aa10.27□□□□□ -0.77
SWM2YNR004W EPS1P40557 701 aa10□□□□□ -0.81
SWM2YNR004W BDF1P35817 686 aa9.97□□□□□ -0.81
SWM2YNR004W YBL029C-AQ3E756 94 aa9.91□□□□□ -0.82
SWM2YNR004W OXP1P28273 1286 aa9.89□□□□□ -0.83
SWM2YNR004W MST1P07236 462 aa9.88□□□□□ -0.83
SWM2YNR004W PTP3P40048 928 aa9.86□□□□□ -0.83
SWM2YNR004W YOR238WQ08634 303 aa9.86□□□□□ -0.83
SWM2YNR004W YIL055CP40523 627 aaKnown RBP9.81□□□□□ -0.84
SWM2YNR004W NSR1P27476 414 aaKnown RBP RIP-Chip data9.75□□□□□ -0.85not detected
SWM2YNR004W VNX1P42839 908 aa9.74□□□□□ -0.85
SWM2YNR004W BBC1P47068 1157 aa9.72□□□□□ -0.85
SWM2YNR004W YAP5P40574 245 aa9.7□□□□□ -0.86
SWM2YNR004W SPP1Q03012 353 aa9.69□□□□□ -0.86
SWM2YNR004W WSC3Q12215 556 aa9.66□□□□□ -0.86
SWM2YNR004W RSM7P47150 247 aa9.64□□□□□ -0.87
SWM2YNR004W AI2P03876 854 aa9.62□□□□□ -0.87
SWM2YNR004W YAH1Q12184 172 aaKnown RBP9.56□□□□□ -0.88
SWM2YNR004W GTT3P39996 337 aa9.55□□□□□ -0.88
SWM2YNR004W YJL171CP46992 396 aa9.54□□□□□ -0.88
SWM2YNR004W TIF11P38912 153 aaKnown RBP9.53□□□□□ -0.88
SWM2YNR004W AIR2Q12476 344 aaKnown RBP9.52□□□□□ -0.89
SWM2YNR004W FKH1P40466 484 aa9.5□□□□□ -0.89
SWM2YNR004W LDB19Q12502 818 aa9.41□□□□□ -0.9
SWM2YNR004W ULI1P43604 169 aa9.37□□□□□ -0.91
SWM2YNR004W PIB1Q06651 286 aa9.36□□□□□ -0.91
SWM2YNR004W BMT6Q12291 365 aa9.33□□□□□ -0.92
SWM2YNR004W YLR271WQ06152 274 aa9.32□□□□□ -0.92
SWM2YNR004W IOC2Q12072 812 aa9.31□□□□□ -0.92
SWM2YNR004W PSD2P53037 1138 aaKnown RBP9.28□□□□□ -0.92
SWM2YNR004W MRM1P25270 412 aa9.25□□□□□ -0.93
SWM2YNR004W MSB4Q12317 492 aa9.25□□□□□ -0.93
SWM2YNR004W EAP1P36041 632 aaKnown RBP9.22□□□□□ -0.93
SWM2YNR004W RTG1P32607 177 aa9.16□□□□□ -0.94
SWM2YNR004W TFA1P36100 482 aa9.16□□□□□ -0.94
SWM2YNR004W SET4P42948 560 aa9.16□□□□□ -0.94
SWM2YNR004W YOL036WQ08206 761 aa9.16□□□□□ -0.94
SWM2YNR004W TRP5P00931 707 aaKnown RBP9.12□□□□□ -0.95
SWM2YNR004W NCR1Q12200 1170 aa9.1□□□□□ -0.95
SWM2YNR004W YMR1P47147 688 aaKnown RBP RIP-Chip data9.08□□□□□ -0.96not detected
SWM2YNR004W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.08□□□□□ -0.96not detected
SWM2YNR004W DBP1P24784 617 aaKnown RBP9.06□□□□□ -0.96
SWM2YNR004W YNL035CP53962 389 aaKnown RBP9.06□□□□□ -0.96
SWM2YNR004W SEC61P32915 480 aa9.05□□□□□ -0.96
SWM2YNR004W YFR006WP43590 535 aa9.03□□□□□ -0.96
SWM2YNR004W SSP1P38871 571 aa9.02□□□□□ -0.97
SWM2YNR004W VMA1P17255 1071 aaKnown RBP9.01□□□□□ -0.97
SWM2YNR004W VPS29P38759 282 aa9.01□□□□□ -0.97
SWM2YNR004W RTG3P38165 486 aa8.99□□□□□ -0.97
SWM2YNR004W TFG1P41895 735 aaPredicted RBP8.98□□□□□ -0.97
SWM2YNR004W STS1P38637 319 aa8.96□□□□□ -0.98
SWM2YNR004W CST9Q06032 482 aa8.96□□□□□ -0.98
SWM2YNR004W SAM3Q08986 587 aa8.96□□□□□ -0.98
SWM2YNR004W SAP30P38429 201 aa8.91□□□□□ -0.98
SWM2YNR004W MGA2P40578 1113 aa8.89□□□□□ -0.99
SWM2YNR004W JIP4Q03361 876 aa8.87□□□□□ -0.99
SWM2YNR004W ABP1P15891 592 aaKnown RBP8.86□□□□□ -0.99
SWM2YNR004W BCK2P33306 851 aa8.85□□□□□ -0.99
SWM2YNR004W DAN4P47179 1161 aa8.85□□□□□ -0.99
SWM2YNR004W YDL129WQ07555 291 aa8.84□□□□□ -0.99
SWM2YNR004W GYP5Q12344 894 aa8.83□□□□□ -1
SWM2YNR004W HTA1P04911 132 aaKnown RBP8.81□□□□□ -1
SWM2YNR004W HTA2P04912 132 aa8.81□□□□□ -1
SWM2YNR004W CHL1P22516 861 aaPredicted RBP8.81□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms