RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeastyeast

Gene SHH3, Length 591 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH3YMR118C FAP1P53971 965 aa10.12□□□□□ -0.79
SHH3YMR118C MTC1P47018 478 aaKnown RBP9.96□□□□□ -0.82
SHH3YMR118C PRY3P47033 881 aa9.54□□□□□ -0.88
SHH3YMR118C AAD16Q02895 342 aa9.07□□□□□ -0.96
SHH3YMR118C PRI1P10363 409 aa8.98□□□□□ -0.97
SHH3YMR118C YCK3P39962 524 aa8.94□□□□□ -0.98
SHH3YMR118C HAA1Q12753 694 aaKnown RBP8.94□□□□□ -0.98
SHH3YMR118C DRS1P32892 752 aaKnown RBP8.71□□□□□ -1.02
SHH3YMR118C ISW2Q08773 1120 aa8.5□□□□□ -1.05
SHH3YMR118C RPG1P38249 964 aaKnown RBP8.43□□□□□ -1.06
SHH3YMR118C TSR3Q12094 313 aaKnown RBP8.42□□□□□ -1.06
SHH3YMR118C MRPL32P25348 183 aa8.13□□□□□ -1.11
SHH3YMR118C YGL015CP33199 130 aa8.11□□□□□ -1.11
SHH3YMR118C BUD31P25337 157 aaPredicted RBP7.85□□□□□ -1.15
SHH3YMR118C DIP2Q12220 943 aaPredicted RBP7.75□□□□□ -1.17
SHH3YMR118C RSE1Q04693 1361 aaKnown RBP7.68□□□□□ -1.18
SHH3YMR118C REB1P21538 810 aa7.56□□□□□ -1.2
SHH3YMR118C CDC27P38042 758 aa7.49□□□□□ -1.21
SHH3YMR118C RPL17AP05740 184 aaKnown RBP7.48□□□□□ -1.21
SHH3YMR118C RPL17BP46990 184 aaKnown RBP7.48□□□□□ -1.21
SHH3YMR118C UBP10P53874 792 aaPredicted RBP7.45□□□□□ -1.22
SHH3YMR118C SIS1P25294 352 aaKnown RBP7.39□□□□□ -1.23
SHH3YMR118C MAP2P38174 421 aaKnown RBP7.38□□□□□ -1.23
SHH3YMR118C AVT3P36062 692 aa7.34□□□□□ -1.23
SHH3YMR118C UBP9P39967 754 aa7.27□□□□□ -1.25
SHH3YMR118C YKR023WP36119 530 aaKnown RBP7.24□□□□□ -1.25
SHH3YMR118C TIF4632P39936 914 aaKnown RBP7.17□□□□□ -1.26
SHH3YMR118C TGL3P40308 642 aa7.17□□□□□ -1.26
SHH3YMR118C TFC8Q12308 588 aa7.1□□□□□ -1.27
SHH3YMR118C BFR2Q06631 534 aaKnown RBP7.09□□□□□ -1.27
SHH3YMR118C HOP09932 586 aa7.08□□□□□ -1.28
SHH3YMR118C SPT21P35209 758 aa7.07□□□□□ -1.28
SHH3YMR118C DCD1P06773 312 aa7.06□□□□□ -1.28
SHH3YMR118C SCY1P53009 804 aa7.06□□□□□ -1.28
SHH3YMR118C SLX5P32828 619 aaKnown RBP7.05□□□□□ -1.28
SHH3YMR118C BCH2P36122 765 aa6.83□□□□□ -1.32
SHH3YMR118C YBL029C-AQ3E756 94 aa6.75□□□□□ -1.33
SHH3YMR118C MST1P07236 462 aa6.74□□□□□ -1.33
SHH3YMR118C RIM101P33400 625 aa6.68□□□□□ -1.34
SHH3YMR118C VNX1P42839 908 aa6.66□□□□□ -1.34
SHH3YMR118C YOR238WQ08634 303 aa6.66□□□□□ -1.34
SHH3YMR118C YJL171CP46992 396 aa6.6□□□□□ -1.35
SHH3YMR118C SPP1Q03012 353 aa6.6□□□□□ -1.35
SHH3YMR118C BDF1P35817 686 aa6.58□□□□□ -1.36
SHH3YMR118C EPS1P40557 701 aa6.57□□□□□ -1.36
SHH3YMR118C AIR2Q12476 344 aaKnown RBP6.56□□□□□ -1.36
SHH3YMR118C NSR1P27476 414 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
SHH3YMR118C WSC3Q12215 556 aa6.5□□□□□ -1.37
SHH3YMR118C FKH1P40466 484 aa6.49□□□□□ -1.37
SHH3YMR118C TIF11P38912 153 aaKnown RBP6.47□□□□□ -1.37
SHH3YMR118C YAP5P40574 245 aa6.46□□□□□ -1.38
SHH3YMR118C OXP1P28273 1286 aa6.44□□□□□ -1.38
SHH3YMR118C PTP3P40048 928 aa6.4□□□□□ -1.38
SHH3YMR118C YIL055CP40523 627 aaKnown RBP6.4□□□□□ -1.38
SHH3YMR118C BMT6Q12291 365 aa6.4□□□□□ -1.38
SHH3YMR118C LDB19Q12502 818 aa6.36□□□□□ -1.39
SHH3YMR118C GTT3P39996 337 aa6.35□□□□□ -1.39
SHH3YMR118C ULI1P43604 169 aa6.33□□□□□ -1.4
SHH3YMR118C IOC2Q12072 812 aa6.32□□□□□ -1.4
SHH3YMR118C BBC1P47068 1157 aa6.31□□□□□ -1.4
SHH3YMR118C RSM7P47150 247 aa6.28□□□□□ -1.4
SHH3YMR118C YAH1Q12184 172 aaKnown RBP6.26□□□□□ -1.41
SHH3YMR118C AI2P03876 854 aa6.25□□□□□ -1.41
SHH3YMR118C EAP1P36041 632 aaKnown RBP6.18□□□□□ -1.42
SHH3YMR118C NCR1Q12200 1170 aa6.18□□□□□ -1.42
SHH3YMR118C RTG1P32607 177 aa6.17□□□□□ -1.42
SHH3YMR118C MSB4Q12317 492 aa6.17□□□□□ -1.42
SHH3YMR118C PIB1Q06651 286 aa6.13□□□□□ -1.43
SHH3YMR118C TFA1P36100 482 aa6.11□□□□□ -1.43
SHH3YMR118C YLR271WQ06152 274 aa6.11□□□□□ -1.43
SHH3YMR118C TRP5P00931 707 aaKnown RBP6.09□□□□□ -1.43
SHH3YMR118C SEC61P32915 480 aa6.09□□□□□ -1.43
SHH3YMR118C YNL035CP53962 389 aaKnown RBP6.08□□□□□ -1.44
SHH3YMR118C BCK2P33306 851 aa6.07□□□□□ -1.44
SHH3YMR118C SET4P42948 560 aa6.05□□□□□ -1.44
SHH3YMR118C YOL036WQ08206 761 aa6.04□□□□□ -1.44
SHH3YMR118C TFG1P41895 735 aaPredicted RBP6.03□□□□□ -1.44
SHH3YMR118C PSD2P53037 1138 aaKnown RBP6.03□□□□□ -1.44
SHH3YMR118C MRM1P25270 412 aa6.01□□□□□ -1.45
SHH3YMR118C CHL1P22516 861 aaPredicted RBP5.99□□□□□ -1.45
SHH3YMR118C SAP30P38429 201 aa5.97□□□□□ -1.45
SHH3YMR118C ARP8Q12386 881 aaKnown RBP RIP-Chip data5.96□□□□□ -1.46not detected
SHH3YMR118C SSP1P38871 571 aa5.95□□□□□ -1.46
SHH3YMR118C PRE3P38624 215 aa5.92□□□□□ -1.46
SHH3YMR118C RGA2Q06407 1009 aa5.92□□□□□ -1.46
SHH3YMR118C DAN4P47179 1161 aa5.91□□□□□ -1.46
SHH3YMR118C JIP4Q03361 876 aa5.91□□□□□ -1.46
SHH3YMR118C YDL129WQ07555 291 aa5.91□□□□□ -1.46
SHH3YMR118C XDJ1P39102 459 aa5.89□□□□□ -1.47
SHH3YMR118C YMR1P47147 688 aaKnown RBP RIP-Chip data5.89□□□□□ -1.47not detected
SHH3YMR118C SAM3Q08986 587 aa5.89□□□□□ -1.47
SHH3YMR118C DBP1P24784 617 aaKnown RBP5.88□□□□□ -1.47
SHH3YMR118C CST9Q06032 482 aa5.88□□□□□ -1.47
SHH3YMR118C VMA1P17255 1071 aaKnown RBP5.87□□□□□ -1.47
SHH3YMR118C RTG3P38165 486 aa5.86□□□□□ -1.47
SHH3YMR118C VPS29P38759 282 aa5.86□□□□□ -1.47
SHH3YMR118C YFR006WP43590 535 aa5.86□□□□□ -1.47
SHH3YMR118C MGA2P40578 1113 aa5.85□□□□□ -1.47
SHH3YMR118C VRP1P37370 817 aa5.83□□□□□ -1.48
SHH3YMR118C ABP1P15891 592 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms