RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W FAP1P53971 965 aa13.88□□□□□ -0.19
CTK3YML112W MTC1P47018 478 aaKnown RBP13.61□□□□□ -0.23
CTK3YML112W PRY3P47033 881 aa13.14□□□□□ -0.31
CTK3YML112W YCK3P39962 524 aa12.49□□□□□ -0.41
CTK3YML112W AAD16Q02895 342 aa12.36□□□□□ -0.43
CTK3YML112W PRI1P10363 409 aa12.28□□□□□ -0.44
CTK3YML112W HAA1Q12753 694 aaKnown RBP12.14□□□□□ -0.47
CTK3YML112W TSR3Q12094 313 aaKnown RBP11.6□□□□□ -0.55
CTK3YML112W RPG1P38249 964 aaKnown RBP11.54□□□□□ -0.56
CTK3YML112W ISW2Q08773 1120 aa11.52□□□□□ -0.57
CTK3YML112W DRS1P32892 752 aaKnown RBP11.28□□□□□ -0.6
CTK3YML112W MRPL32P25348 183 aa11.02□□□□□ -0.65
CTK3YML112W YGL015CP33199 130 aa10.93□□□□□ -0.66
CTK3YML112W BUD31P25337 157 aaPredicted RBP10.73□□□□□ -0.69
CTK3YML112W RSE1Q04693 1361 aaKnown RBP10.41□□□□□ -0.74
CTK3YML112W DIP2Q12220 943 aaPredicted RBP10.39□□□□□ -0.75
CTK3YML112W CDC27P38042 758 aa10.36□□□□□ -0.75
CTK3YML112W REB1P21538 810 aa10.28□□□□□ -0.76
CTK3YML112W RPL17AP05740 184 aaKnown RBP10.25□□□□□ -0.77
CTK3YML112W RPL17BP46990 184 aaKnown RBP10.25□□□□□ -0.77
CTK3YML112W MAP2P38174 421 aaKnown RBP10.17□□□□□ -0.78
CTK3YML112W UBP10P53874 792 aaPredicted RBP10.1□□□□□ -0.79
CTK3YML112W SIS1P25294 352 aaKnown RBP10.05□□□□□ -0.8
CTK3YML112W YKR023WP36119 530 aaKnown RBP9.95□□□□□ -0.82
CTK3YML112W DCD1P06773 312 aa9.83□□□□□ -0.84
CTK3YML112W HOP09932 586 aa9.77□□□□□ -0.85
CTK3YML112W UBP9P39967 754 aa9.75□□□□□ -0.85
CTK3YML112W SPT21P35209 758 aa9.72□□□□□ -0.85
CTK3YML112W TFC8Q12308 588 aa9.71□□□□□ -0.86
CTK3YML112W SCY1P53009 804 aa9.69□□□□□ -0.86
CTK3YML112W TGL3P40308 642 aa9.66□□□□□ -0.86
CTK3YML112W TIF4632P39936 914 aaKnown RBP9.65□□□□□ -0.86
CTK3YML112W AVT3P36062 692 aa9.63□□□□□ -0.87
CTK3YML112W SLX5P32828 619 aaKnown RBP9.59□□□□□ -0.87
CTK3YML112W BFR2Q06631 534 aaKnown RBP9.43□□□□□ -0.9
CTK3YML112W BCH2P36122 765 aa9.36□□□□□ -0.91
CTK3YML112W YBL029C-AQ3E756 94 aa9.29□□□□□ -0.92
CTK3YML112W MST1P07236 462 aa9.12□□□□□ -0.95
CTK3YML112W VNX1P42839 908 aa9.06□□□□□ -0.96
CTK3YML112W RIM101P33400 625 aa9.01□□□□□ -0.97
CTK3YML112W BDF1P35817 686 aa9.01□□□□□ -0.97
CTK3YML112W EPS1P40557 701 aa9.01□□□□□ -0.97
CTK3YML112W YOR238WQ08634 303 aa8.99□□□□□ -0.97
CTK3YML112W AIR2Q12476 344 aaKnown RBP8.97□□□□□ -0.97
CTK3YML112W SPP1Q03012 353 aa8.95□□□□□ -0.98
CTK3YML112W WSC3Q12215 556 aa8.9□□□□□ -0.98
CTK3YML112W FKH1P40466 484 aa8.89□□□□□ -0.99
CTK3YML112W YJL171CP46992 396 aa8.85□□□□□ -0.99
CTK3YML112W NSR1P27476 414 aaKnown RBP RIP-Chip data8.8□□□□□ -1not detected
CTK3YML112W TIF11P38912 153 aaKnown RBP8.76□□□□□ -1.01
CTK3YML112W OXP1P28273 1286 aa8.73□□□□□ -1.01
CTK3YML112W YAP5P40574 245 aa8.72□□□□□ -1.01
CTK3YML112W LDB19Q12502 818 aa8.68□□□□□ -1.02
CTK3YML112W BMT6Q12291 365 aa8.65□□□□□ -1.02
CTK3YML112W IOC2Q12072 812 aa8.59□□□□□ -1.03
CTK3YML112W GTT3P39996 337 aa8.58□□□□□ -1.04
CTK3YML112W PTP3P40048 928 aa8.58□□□□□ -1.04
CTK3YML112W ULI1P43604 169 aa8.58□□□□□ -1.04
CTK3YML112W TFA1P36100 482 aa8.52□□□□□ -1.05
CTK3YML112W BBC1P47068 1157 aa8.48□□□□□ -1.05
CTK3YML112W PIB1Q06651 286 aa8.48□□□□□ -1.05
CTK3YML112W YIL055CP40523 627 aaKnown RBP8.47□□□□□ -1.05
CTK3YML112W AI2P03876 854 aa8.46□□□□□ -1.06
CTK3YML112W RSM7P47150 247 aa8.4□□□□□ -1.06
CTK3YML112W RTG1P32607 177 aa8.37□□□□□ -1.07
CTK3YML112W NCR1Q12200 1170 aa8.3□□□□□ -1.08
CTK3YML112W TRP5P00931 707 aaKnown RBP8.29□□□□□ -1.08
CTK3YML112W SET4P42948 560 aa8.28□□□□□ -1.08
CTK3YML112W MSB4Q12317 492 aa8.28□□□□□ -1.08
CTK3YML112W YOL036WQ08206 761 aa8.26□□□□□ -1.09
CTK3YML112W YAH1Q12184 172 aaKnown RBP8.26□□□□□ -1.09
CTK3YML112W EAP1P36041 632 aaKnown RBP8.25□□□□□ -1.09
CTK3YML112W BCK2P33306 851 aa8.19□□□□□ -1.1
CTK3YML112W YNL035CP53962 389 aaKnown RBP8.19□□□□□ -1.1
CTK3YML112W SEC61P32915 480 aa8.17□□□□□ -1.1
CTK3YML112W SAP30P38429 201 aa8.12□□□□□ -1.11
CTK3YML112W MRM1P25270 412 aa8.1□□□□□ -1.11
CTK3YML112W PSD2P53037 1138 aaKnown RBP8.08□□□□□ -1.12
CTK3YML112W RGA2Q06407 1009 aa8.07□□□□□ -1.12
CTK3YML112W YLR271WQ06152 274 aa8.06□□□□□ -1.12
CTK3YML112W CHL1P22516 861 aaPredicted RBP8.03□□□□□ -1.12
CTK3YML112W TFG1P41895 735 aaPredicted RBP8.02□□□□□ -1.13
CTK3YML112W YFR006WP43590 535 aa8.02□□□□□ -1.13
CTK3YML112W DAN4P47179 1161 aa8.02□□□□□ -1.13
CTK3YML112W VMA1P17255 1071 aaKnown RBP8□□□□□ -1.13
CTK3YML112W DBP1P24784 617 aaKnown RBP8□□□□□ -1.13
CTK3YML112W PRE3P38624 215 aa7.99□□□□□ -1.13
CTK3YML112W YDL129WQ07555 291 aa7.97□□□□□ -1.13
CTK3YML112W SAM3Q08986 587 aa7.97□□□□□ -1.13
CTK3YML112W STS1P38637 319 aa7.95□□□□□ -1.14
CTK3YML112W VPS29P38759 282 aa7.95□□□□□ -1.14
CTK3YML112W YMR1P47147 688 aaKnown RBP RIP-Chip data7.95□□□□□ -1.14not detected
CTK3YML112W YDR344CQ05510 147 aa7.95□□□□□ -1.14
CTK3YML112W VRP1P37370 817 aa7.89□□□□□ -1.15
CTK3YML112W XDJ1P39102 459 aa7.89□□□□□ -1.15
CTK3YML112W JIP4Q03361 876 aa7.88□□□□□ -1.15
CTK3YML112W DPS1P04802 557 aaKnown RBP7.84□□□□□ -1.15
CTK3YML112W DCW1P36091 449 aa7.79□□□□□ -1.16
CTK3YML112W GYP5Q12344 894 aa7.79□□□□□ -1.16
CTK3YML112W SSP1P38871 571 aa7.78□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms