RNA–Protein interactions for RNA: YKL057C

NUP120, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP120, Length 3,114 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP120	YKL057C	DRS1	P32892	752 aa	Known RBP	7.47	□□□□□ -1.21
NUP120	YKL057C	MTC1	P47018	478 aa	Known RBP	7.01	□□□□□ -1.29
NUP120	YKL057C	BFR2	Q06631	534 aa	Known RBP	6.61	□□□□□ -1.35
NUP120	YKL057C	FAP1	P53971	965 aa		6.24	□□□□□ -1.41
NUP120	YKL057C	DIP2	Q12220	943 aa	Predicted RBP	6.17	□□□□□ -1.42
NUP120	YKL057C	ISW2	Q08773	1120 aa		5.94	□□□□□ -1.46
NUP120	YKL057C	RSE1	Q04693	1361 aa	Known RBP	5.91	□□□□□ -1.46
NUP120	YKL057C	REB1	P21538	810 aa		5.83	□□□□□ -1.48
NUP120	YKL057C	TFA1	P36100	482 aa		5.82	□□□□□ -1.48
NUP120	YKL057C	RPG1	P38249	964 aa	Known RBP	5.78	□□□□□ -1.48
NUP120	YKL057C	RPL17A	P05740	184 aa	Known RBP	5.76	□□□□□ -1.49
NUP120	YKL057C	RPL17B	P46990	184 aa	Known RBP	5.76	□□□□□ -1.49
NUP120	YKL057C	RQC2	Q12532	1038 aa	Known RBP	5.75	□□□□□ -1.49
NUP120	YKL057C	AVT3	P36062	692 aa		5.73	□□□□□ -1.49
NUP120	YKL057C	PRY3	P47033	881 aa		5.71	□□□□□ -1.5
NUP120	YKL057C	AAD16	Q02895	342 aa		5.63	□□□□□ -1.51
NUP120	YKL057C	PTP3	P40048	928 aa		5.52	□□□□□ -1.53
NUP120	YKL057C	TSR3	Q12094	313 aa	Known RBP	5.51	□□□□□ -1.53
NUP120	YKL057C	PRI1	P10363	409 aa		5.44	□□□□□ -1.54
NUP120	YKL057C	MRPL32	P25348	183 aa		5.44	□□□□□ -1.54
NUP120	YKL057C	YAH1	Q12184	172 aa	Known RBP	5.43	□□□□□ -1.54
NUP120	YKL057C	YIL055C	P40523	627 aa	Known RBP	5.42	□□□□□ -1.54
NUP120	YKL057C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.3	□□□□□ -1.56	not detected
NUP120	YKL057C	HAA1	Q12753	694 aa	Known RBP	5.18	□□□□□ -1.58
NUP120	YKL057C	SSP1	P38871	571 aa		5.14	□□□□□ -1.59
NUP120	YKL057C	HO	P09932	586 aa		5.13	□□□□□ -1.59
NUP120	YKL057C	DMA1	P38823	416 aa		5.11	□□□□□ -1.59
NUP120	YKL057C	BBC1	P47068	1157 aa		5.08	□□□□□ -1.6
NUP120	YKL057C	DCD1	P06773	312 aa		5.03	□□□□□ -1.6
NUP120	YKL057C	RSM7	P47150	247 aa		5.01	□□□□□ -1.61
NUP120	YKL057C	RIM101	P33400	625 aa		5	□□□□□ -1.61
NUP120	YKL057C	SPT21	P35209	758 aa		4.97	□□□□□ -1.61
NUP120	YKL057C	SCY1	P53009	804 aa		4.94	□□□□□ -1.62
NUP120	YKL057C	OXP1	P28273	1286 aa		4.88	□□□□□ -1.63
NUP120	YKL057C	AI2	P03876	854 aa		4.88	□□□□□ -1.63
NUP120	YKL057C	TFC8	Q12308	588 aa		4.88	□□□□□ -1.63
NUP120	YKL057C	MGA2	P40578	1113 aa		4.87	□□□□□ -1.63
NUP120	YKL057C	YKR023W	P36119	530 aa	Known RBP	4.86	□□□□□ -1.63
NUP120	YKL057C	YGL015C	P33199	130 aa		4.86	□□□□□ -1.63
NUP120	YKL057C	CDC27	P38042	758 aa		4.86	□□□□□ -1.63
NUP120	YKL057C	SLX5	P32828	619 aa	Known RBP	4.85	□□□□□ -1.63
NUP120	YKL057C	MRM1	P25270	412 aa		4.84	□□□□□ -1.63
NUP120	YKL057C	GTT3	P39996	337 aa		4.84	□□□□□ -1.63
NUP120	YKL057C	YLR271W	Q06152	274 aa		4.83	□□□□□ -1.64
NUP120	YKL057C	SPB4	P25808	606 aa	Predicted RBP	4.83	□□□□□ -1.64
NUP120	YKL057C	TIF4632	P39936	914 aa	Known RBP	4.8	□□□□□ -1.64
NUP120	YKL057C	MIF2	P35201	549 aa		4.78	□□□□□ -1.64
NUP120	YKL057C	EPS1	P40557	701 aa		4.78	□□□□□ -1.64
NUP120	YKL057C	MAP2	P38174	421 aa	Known RBP	4.77	□□□□□ -1.65
NUP120	YKL057C	BCH2	P36122	765 aa		4.77	□□□□□ -1.65
NUP120	YKL057C	PIB1	Q06651	286 aa		4.76	□□□□□ -1.65
NUP120	YKL057C	CST9	Q06032	482 aa		4.74	□□□□□ -1.65
NUP120	YKL057C	VPS70	P47161	811 aa		4.71	□□□□□ -1.66
NUP120	YKL057C	RTG3	P38165	486 aa		4.69	□□□□□ -1.66
NUP120	YKL057C	YFR006W	P43590	535 aa		4.69	□□□□□ -1.66
NUP120	YKL057C	UBP10	P53874	792 aa	Predicted RBP	4.69	□□□□□ -1.66
NUP120	YKL057C	BDF1	P35817	686 aa		4.66	□□□□□ -1.66
NUP120	YKL057C	IFH1	P39520	1085 aa		4.66	□□□□□ -1.66
NUP120	YKL057C	KIC1	P38692	1080 aa		4.66	□□□□□ -1.66
NUP120	YKL057C	WSC3	Q12215	556 aa		4.63	□□□□□ -1.67
NUP120	YKL057C	YOR238W	Q08634	303 aa		4.62	□□□□□ -1.67
NUP120	YKL057C	SET1	P38827	1080 aa	Known RBP	4.62	□□□□□ -1.67
NUP120	YKL057C	ATH1	P48016	1211 aa		4.61	□□□□□ -1.67
NUP120	YKL057C	HGH1	P48362	394 aa	Known RBP	4.6	□□□□□ -1.67
NUP120	YKL057C	DBP1	P24784	617 aa	Known RBP	4.59	□□□□□ -1.67
NUP120	YKL057C	PSD2	P53037	1138 aa	Known RBP	4.59	□□□□□ -1.68
NUP120	YKL057C	YAP5	P40574	245 aa		4.57	□□□□□ -1.68
NUP120	YKL057C	ATF2	P53296	535 aa		4.56	□□□□□ -1.68
NUP120	YKL057C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
NUP120	YKL057C	CKB1	P43639	278 aa		4.55	□□□□□ -1.68
NUP120	YKL057C	PEX29	Q03370	554 aa		4.55	□□□□□ -1.68
NUP120	YKL057C	TFG1	P41895	735 aa	Predicted RBP	4.54	□□□□□ -1.68
NUP120	YKL057C	RPP1B	P10622	106 aa	Known RBP	4.53	□□□□□ -1.68
NUP120	YKL057C	RCR1	P38212	213 aa		4.52	□□□□□ -1.69
NUP120	YKL057C	RAM2	P29703	316 aa		4.52	□□□□□ -1.69
NUP120	YKL057C	DCW1	P36091	449 aa		4.52	□□□□□ -1.69
NUP120	YKL057C	COQ8	P27697	501 aa		4.51	□□□□□ -1.69
NUP120	YKL057C	GRE2	Q12068	342 aa	Known RBP	4.51	□□□□□ -1.69
NUP120	YKL057C	UBP9	P39967	754 aa		4.5	□□□□□ -1.69
NUP120	YKL057C	SET4	P42948	560 aa		4.5	□□□□□ -1.69
NUP120	YKL057C	PEX21	P50091	288 aa		4.5	□□□□□ -1.69
NUP120	YKL057C	GYP5	Q12344	894 aa		4.49	□□□□□ -1.69
NUP120	YKL057C	YCK3	P39962	524 aa		4.49	□□□□□ -1.69
NUP120	YKL057C	MAK11	P20484	414 aa	Known RBP	4.48	□□□□□ -1.69
NUP120	YKL057C	MAM3	Q12296	706 aa		4.46	□□□□□ -1.69
NUP120	YKL057C	VHR2	P40041	505 aa		4.46	□□□□□ -1.7
NUP120	YKL057C	YMR196W	Q04336	1088 aa		4.46	□□□□□ -1.7
NUP120	YKL057C	RPN1	P38764	993 aa	Known RBP	4.45	□□□□□ -1.7
NUP120	YKL057C	RPL34B	P40525	121 aa	Known RBP	4.45	□□□□□ -1.7
NUP120	YKL057C	REF2	P42073	533 aa	Predicted RBP	4.44	□□□□□ -1.7
NUP120	YKL057C	PBS2	P08018	668 aa		4.44	□□□□□ -1.7
NUP120	YKL057C	TAF7	Q05021	590 aa		4.44	□□□□□ -1.7
NUP120	YKL057C	RAD54	P32863	898 aa		4.43	□□□□□ -1.7
NUP120	YKL057C	IES2	P40154	320 aa		4.43	□□□□□ -1.7
NUP120	YKL057C	LEO1	P38439	464 aa		4.41	□□□□□ -1.7
NUP120	YKL057C	TGL3	P40308	642 aa		4.41	□□□□□ -1.7
NUP120	YKL057C	SPP1	Q03012	353 aa		4.4	□□□□□ -1.7
NUP120	YKL057C	HTA1	P04911	132 aa	Known RBP	4.39	□□□□□ -1.71
NUP120	YKL057C	HTA2	P04912	132 aa		4.39	□□□□□ -1.71
NUP120	YKL057C	GLC3	P32775	704 aa		4.39	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 27.6 ms