RNA–Protein interactions for RNA: YJL053W

PEP8, Transcript of Vacuolar protein component of the retromer, yeastyeast

Gene PEP8, Length 1,140 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEP8YJL053W MTC1P47018 478 aaKnown RBP15.31■□□□□ 0.04
PEP8YJL053W FAP1P53971 965 aa14.88□□□□□ -0.03
PEP8YJL053W PRY3P47033 881 aa13.96□□□□□ -0.17
PEP8YJL053W DRS1P32892 752 aaKnown RBP13.52□□□□□ -0.25
PEP8YJL053W AAD16Q02895 342 aa13.43□□□□□ -0.26
PEP8YJL053W PRI1P10363 409 aa13.36□□□□□ -0.27
PEP8YJL053W HAA1Q12753 694 aaKnown RBP13.03□□□□□ -0.32
PEP8YJL053W ISW2Q08773 1120 aa12.96□□□□□ -0.33
PEP8YJL053W YCK3P39962 524 aa12.93□□□□□ -0.34
PEP8YJL053W RPG1P38249 964 aaKnown RBP12.81□□□□□ -0.36
PEP8YJL053W TSR3Q12094 313 aaKnown RBP12.62□□□□□ -0.39
PEP8YJL053W MRPL32P25348 183 aa12.19□□□□□ -0.46
PEP8YJL053W DIP2Q12220 943 aaPredicted RBP12.13□□□□□ -0.47
PEP8YJL053W RSE1Q04693 1361 aaKnown RBP11.98□□□□□ -0.49
PEP8YJL053W YGL015CP33199 130 aa11.92□□□□□ -0.5
PEP8YJL053W REB1P21538 810 aa11.75□□□□□ -0.53
PEP8YJL053W RPL17AP05740 184 aaKnown RBP11.66□□□□□ -0.54
PEP8YJL053W RPL17BP46990 184 aaKnown RBP11.66□□□□□ -0.54
PEP8YJL053W AVT3P36062 692 aa11.37□□□□□ -0.59
PEP8YJL053W CDC27P38042 758 aa11.31□□□□□ -0.6
PEP8YJL053W BUD31P25337 157 aaPredicted RBP11.23□□□□□ -0.61
PEP8YJL053W UBP10P53874 792 aaPredicted RBP11.16□□□□□ -0.62
PEP8YJL053W MAP2P38174 421 aaKnown RBP11.1□□□□□ -0.63
PEP8YJL053W YKR023WP36119 530 aaKnown RBP11.07□□□□□ -0.64
PEP8YJL053W SPT21P35209 758 aa10.96□□□□□ -0.65
PEP8YJL053W HOP09932 586 aa10.91□□□□□ -0.66
PEP8YJL053W DCD1P06773 312 aa10.88□□□□□ -0.67
PEP8YJL053W TFC8Q12308 588 aa10.87□□□□□ -0.67
PEP8YJL053W BFR2Q06631 534 aaKnown RBP10.84□□□□□ -0.67
PEP8YJL053W TIF4632P39936 914 aaKnown RBP10.81□□□□□ -0.68
PEP8YJL053W SCY1P53009 804 aa10.76□□□□□ -0.69
PEP8YJL053W SIS1P25294 352 aaKnown RBP10.71□□□□□ -0.69
PEP8YJL053W UBP9P39967 754 aa10.71□□□□□ -0.69
PEP8YJL053W SLX5P32828 619 aaKnown RBP10.69□□□□□ -0.7
PEP8YJL053W TGL3P40308 642 aa10.68□□□□□ -0.7
PEP8YJL053W BCH2P36122 765 aa10.49□□□□□ -0.73
PEP8YJL053W RIM101P33400 625 aa10.44□□□□□ -0.74
PEP8YJL053W EPS1P40557 701 aa10.18□□□□□ -0.78
PEP8YJL053W BDF1P35817 686 aa10.16□□□□□ -0.78
PEP8YJL053W YBL029C-AQ3E756 94 aa10.11□□□□□ -0.79
PEP8YJL053W YOR238WQ08634 303 aa10.09□□□□□ -0.79
PEP8YJL053W PTP3P40048 928 aa10.07□□□□□ -0.8
PEP8YJL053W YIL055CP40523 627 aaKnown RBP10.07□□□□□ -0.8
PEP8YJL053W MST1P07236 462 aa10.06□□□□□ -0.8
PEP8YJL053W OXP1P28273 1286 aa10.04□□□□□ -0.8
PEP8YJL053W VNX1P42839 908 aa9.95□□□□□ -0.82
PEP8YJL053W BBC1P47068 1157 aa9.95□□□□□ -0.82
PEP8YJL053W SPP1Q03012 353 aa9.92□□□□□ -0.82
PEP8YJL053W NSR1P27476 414 aaKnown RBP RIP-Chip data9.9□□□□□ -0.82not detected
PEP8YJL053W YAP5P40574 245 aa9.9□□□□□ -0.82
PEP8YJL053W WSC3Q12215 556 aa9.87□□□□□ -0.83
PEP8YJL053W RSM7P47150 247 aa9.83□□□□□ -0.84
PEP8YJL053W YJL171CP46992 396 aa9.82□□□□□ -0.84
PEP8YJL053W AI2P03876 854 aa9.8□□□□□ -0.84
PEP8YJL053W GTT3P39996 337 aa9.78□□□□□ -0.84
PEP8YJL053W YAH1Q12184 172 aaKnown RBP9.75□□□□□ -0.85
PEP8YJL053W TIF11P38912 153 aaKnown RBP9.73□□□□□ -0.85
PEP8YJL053W AIR2Q12476 344 aaKnown RBP9.69□□□□□ -0.86
PEP8YJL053W FKH1P40466 484 aa9.65□□□□□ -0.86
PEP8YJL053W LDB19Q12502 818 aa9.61□□□□□ -0.87
PEP8YJL053W ULI1P43604 169 aa9.58□□□□□ -0.88
PEP8YJL053W PIB1Q06651 286 aa9.55□□□□□ -0.88
PEP8YJL053W BMT6Q12291 365 aa9.55□□□□□ -0.88
PEP8YJL053W IOC2Q12072 812 aa9.49□□□□□ -0.89
PEP8YJL053W YLR271WQ06152 274 aa9.45□□□□□ -0.9
PEP8YJL053W EAP1P36041 632 aaKnown RBP9.44□□□□□ -0.9
PEP8YJL053W MSB4Q12317 492 aa9.44□□□□□ -0.9
PEP8YJL053W MRM1P25270 412 aa9.42□□□□□ -0.9
PEP8YJL053W PSD2P53037 1138 aaKnown RBP9.39□□□□□ -0.91
PEP8YJL053W TFA1P36100 482 aa9.36□□□□□ -0.91
PEP8YJL053W RTG1P32607 177 aa9.35□□□□□ -0.91
PEP8YJL053W SET4P42948 560 aa9.35□□□□□ -0.91
PEP8YJL053W NCR1Q12200 1170 aa9.34□□□□□ -0.91
PEP8YJL053W TRP5P00931 707 aaKnown RBP9.31□□□□□ -0.92
PEP8YJL053W YOL036WQ08206 761 aa9.31□□□□□ -0.92
PEP8YJL053W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.27□□□□□ -0.93not detected
PEP8YJL053W YMR1P47147 688 aaKnown RBP RIP-Chip data9.26□□□□□ -0.93not detected
PEP8YJL053W YNL035CP53962 389 aaKnown RBP9.26□□□□□ -0.93
PEP8YJL053W TFG1P41895 735 aaPredicted RBP9.25□□□□□ -0.93
PEP8YJL053W DBP1P24784 617 aaKnown RBP9.24□□□□□ -0.93
PEP8YJL053W SEC61P32915 480 aa9.24□□□□□ -0.93
PEP8YJL053W YFR006WP43590 535 aa9.2□□□□□ -0.94
PEP8YJL053W RTG3P38165 486 aa9.19□□□□□ -0.94
PEP8YJL053W SSP1P38871 571 aa9.18□□□□□ -0.94
PEP8YJL053W VMA1P17255 1071 aaKnown RBP9.16□□□□□ -0.94
PEP8YJL053W VPS29P38759 282 aa9.16□□□□□ -0.94
PEP8YJL053W SAP30P38429 201 aa9.1□□□□□ -0.95
PEP8YJL053W SAM3Q08986 587 aa9.1□□□□□ -0.95
PEP8YJL053W CST9Q06032 482 aa9.09□□□□□ -0.95
PEP8YJL053W STS1P38637 319 aa9.08□□□□□ -0.96
PEP8YJL053W JIP4Q03361 876 aa9.07□□□□□ -0.96
PEP8YJL053W BCK2P33306 851 aa9.05□□□□□ -0.96
PEP8YJL053W MGA2P40578 1113 aa9.05□□□□□ -0.96
PEP8YJL053W ABP1P15891 592 aaKnown RBP9.04□□□□□ -0.96
PEP8YJL053W CHL1P22516 861 aaPredicted RBP9.02□□□□□ -0.97
PEP8YJL053W YDL129WQ07555 291 aa9.02□□□□□ -0.97
PEP8YJL053W GYP5Q12344 894 aa9.02□□□□□ -0.97
PEP8YJL053W HTA1P04911 132 aaKnown RBP9□□□□□ -0.97
PEP8YJL053W HTA2P04912 132 aa9□□□□□ -0.97
PEP8YJL053W DAN4P47179 1161 aa9□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 267 ms