RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W MTC1P47018 478 aaKnown RBP13.88□□□□□ -0.19
SEC4YFL005W FAP1P53971 965 aa13.24□□□□□ -0.29
SEC4YFL005W PRY3P47033 881 aa12.45□□□□□ -0.42
SEC4YFL005W DRS1P32892 752 aaKnown RBP12.28□□□□□ -0.44
SEC4YFL005W AAD16Q02895 342 aa12.12□□□□□ -0.47
SEC4YFL005W PRI1P10363 409 aa12.08□□□□□ -0.48
SEC4YFL005W HAA1Q12753 694 aaKnown RBP11.71□□□□□ -0.53
SEC4YFL005W YCK3P39962 524 aa11.7□□□□□ -0.54
SEC4YFL005W ISW2Q08773 1120 aa11.69□□□□□ -0.54
SEC4YFL005W RPG1P38249 964 aaKnown RBP11.55□□□□□ -0.56
SEC4YFL005W TSR3Q12094 313 aaKnown RBP11.36□□□□□ -0.59
SEC4YFL005W DIP2Q12220 943 aaPredicted RBP11.04□□□□□ -0.64
SEC4YFL005W MRPL32P25348 183 aa10.98□□□□□ -0.65
SEC4YFL005W RSE1Q04693 1361 aaKnown RBP10.87□□□□□ -0.67
SEC4YFL005W YGL015CP33199 130 aa10.74□□□□□ -0.69
SEC4YFL005W REB1P21538 810 aa10.57□□□□□ -0.72
SEC4YFL005W RPL17AP05740 184 aaKnown RBP10.53□□□□□ -0.72
SEC4YFL005W RPL17BP46990 184 aaKnown RBP10.53□□□□□ -0.72
SEC4YFL005W AVT3P36062 692 aa10.43□□□□□ -0.74
SEC4YFL005W CDC27P38042 758 aa10.24□□□□□ -0.77
SEC4YFL005W BUD31P25337 157 aaPredicted RBP10.1□□□□□ -0.79
SEC4YFL005W UBP10P53874 792 aaPredicted RBP10.09□□□□□ -0.79
SEC4YFL005W YKR023WP36119 530 aaKnown RBP10.07□□□□□ -0.8
SEC4YFL005W SPT21P35209 758 aa10.02□□□□□ -0.81
SEC4YFL005W MAP2P38174 421 aaKnown RBP10.01□□□□□ -0.81
SEC4YFL005W BFR2Q06631 534 aaKnown RBP9.89□□□□□ -0.83
SEC4YFL005W TFC8Q12308 588 aa9.88□□□□□ -0.83
SEC4YFL005W HOP09932 586 aa9.85□□□□□ -0.83
SEC4YFL005W DCD1P06773 312 aa9.79□□□□□ -0.84
SEC4YFL005W TIF4632P39936 914 aaKnown RBP9.71□□□□□ -0.86
SEC4YFL005W TGL3P40308 642 aa9.69□□□□□ -0.86
SEC4YFL005W SCY1P53009 804 aa9.69□□□□□ -0.86
SEC4YFL005W SLX5P32828 619 aaKnown RBP9.64□□□□□ -0.87
SEC4YFL005W UBP9P39967 754 aa9.61□□□□□ -0.87
SEC4YFL005W RIM101P33400 625 aa9.57□□□□□ -0.88
SEC4YFL005W SIS1P25294 352 aaKnown RBP9.56□□□□□ -0.88
SEC4YFL005W BCH2P36122 765 aa9.53□□□□□ -0.88
SEC4YFL005W BDF1P35817 686 aa9.23□□□□□ -0.93
SEC4YFL005W EPS1P40557 701 aa9.23□□□□□ -0.93
SEC4YFL005W MST1P07236 462 aa9.2□□□□□ -0.94
SEC4YFL005W OXP1P28273 1286 aa9.19□□□□□ -0.94
SEC4YFL005W YOR238WQ08634 303 aa9.13□□□□□ -0.95
SEC4YFL005W YIL055CP40523 627 aaKnown RBP9.11□□□□□ -0.95
SEC4YFL005W PTP3P40048 928 aa9.09□□□□□ -0.95
SEC4YFL005W YBL029C-AQ3E756 94 aa9.09□□□□□ -0.95
SEC4YFL005W NSR1P27476 414 aaKnown RBP RIP-Chip data9.05□□□□□ -0.96 RIP-Chip
SEC4YFL005W VNX1P42839 908 aa9.01□□□□□ -0.97
SEC4YFL005W BBC1P47068 1157 aa9□□□□□ -0.97
SEC4YFL005W RSM7P47150 247 aa8.97□□□□□ -0.97
SEC4YFL005W YAP5P40574 245 aa8.96□□□□□ -0.98
SEC4YFL005W SPP1Q03012 353 aa8.93□□□□□ -0.98
SEC4YFL005W AI2P03876 854 aa8.92□□□□□ -0.98
SEC4YFL005W WSC3Q12215 556 aa8.86□□□□□ -0.99
SEC4YFL005W TFA1P36100 482 aa8.83□□□□□ -1
SEC4YFL005W TIF11P38912 153 aaKnown RBP8.81□□□□□ -1
SEC4YFL005W YAH1Q12184 172 aaKnown RBP8.81□□□□□ -1
SEC4YFL005W AIR2Q12476 344 aaKnown RBP8.79□□□□□ -1
SEC4YFL005W GTT3P39996 337 aa8.78□□□□□ -1
SEC4YFL005W YJL171CP46992 396 aa8.78□□□□□ -1
SEC4YFL005W FKH1P40466 484 aa8.74□□□□□ -1.01
SEC4YFL005W YLR271WQ06152 274 aa8.66□□□□□ -1.02
SEC4YFL005W ULI1P43604 169 aa8.65□□□□□ -1.02
SEC4YFL005W LDB19Q12502 818 aa8.65□□□□□ -1.02
SEC4YFL005W IOC2Q12072 812 aa8.64□□□□□ -1.03
SEC4YFL005W PSD2P53037 1138 aaKnown RBP8.61□□□□□ -1.03
SEC4YFL005W BMT6Q12291 365 aa8.6□□□□□ -1.03
SEC4YFL005W PIB1Q06651 286 aa8.58□□□□□ -1.04
SEC4YFL005W MSB4Q12317 492 aa8.57□□□□□ -1.04
SEC4YFL005W EAP1P36041 632 aaKnown RBP8.56□□□□□ -1.04
SEC4YFL005W MRM1P25270 412 aa8.55□□□□□ -1.04
SEC4YFL005W RTG1P32607 177 aa8.45□□□□□ -1.06
SEC4YFL005W YOL036WQ08206 761 aa8.45□□□□□ -1.06
SEC4YFL005W NCR1Q12200 1170 aa8.45□□□□□ -1.06
SEC4YFL005W TRP5P00931 707 aaKnown RBP8.44□□□□□ -1.06
SEC4YFL005W SET4P42948 560 aa8.44□□□□□ -1.06
SEC4YFL005W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.44□□□□□ -1.06not detected
SEC4YFL005W YMR1P47147 688 aaKnown RBP RIP-Chip data8.43□□□□□ -1.06not detected
SEC4YFL005W DBP1P24784 617 aaKnown RBP8.4□□□□□ -1.06
SEC4YFL005W SEC61P32915 480 aa8.4□□□□□ -1.06
SEC4YFL005W SSP1P38871 571 aa8.4□□□□□ -1.06
SEC4YFL005W VPS29P38759 282 aa8.39□□□□□ -1.07
SEC4YFL005W YNL035CP53962 389 aaKnown RBP8.39□□□□□ -1.07
SEC4YFL005W RTG3P38165 486 aa8.37□□□□□ -1.07
SEC4YFL005W SAM3Q08986 587 aa8.35□□□□□ -1.07
SEC4YFL005W VMA1P17255 1071 aaKnown RBP8.34□□□□□ -1.07
SEC4YFL005W YFR006WP43590 535 aa8.32□□□□□ -1.08
SEC4YFL005W TFG1P41895 735 aaPredicted RBP8.31□□□□□ -1.08
SEC4YFL005W STS1P38637 319 aa8.29□□□□□ -1.08
SEC4YFL005W MGA2P40578 1113 aa8.29□□□□□ -1.08
SEC4YFL005W CST9Q06032 482 aa8.29□□□□□ -1.08
SEC4YFL005W JIP4Q03361 876 aa8.25□□□□□ -1.09
SEC4YFL005W ABP1P15891 592 aaKnown RBP8.23□□□□□ -1.09
SEC4YFL005W DAN4P47179 1161 aa8.23□□□□□ -1.09
SEC4YFL005W SAP30P38429 201 aa8.2□□□□□ -1.1
SEC4YFL005W GYP5Q12344 894 aa8.2□□□□□ -1.1
SEC4YFL005W YDL129WQ07555 291 aa8.19□□□□□ -1.1
SEC4YFL005W CHL1P22516 861 aaPredicted RBP8.18□□□□□ -1.1
SEC4YFL005W BCK2P33306 851 aa8.18□□□□□ -1.1
SEC4YFL005W HTA1P04911 132 aaKnown RBP8.15□□□□□ -1.1
SEC4YFL005W HTA2P04912 132 aa8.15□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 39.5 ms