RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeastyeast

Gene SMB1, Length 591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMB1YER029C FAP1P53971 965 aa14.7□□□□□ -0.06
SMB1YER029C MTC1P47018 478 aaKnown RBP14.56□□□□□ -0.08
SMB1YER029C PRY3P47033 881 aa13.87□□□□□ -0.19
SMB1YER029C AAD16Q02895 342 aa13.1□□□□□ -0.31
SMB1YER029C YCK3P39962 524 aa13.01□□□□□ -0.33
SMB1YER029C PRI1P10363 409 aa13□□□□□ -0.33
SMB1YER029C HAA1Q12753 694 aaKnown RBP12.8□□□□□ -0.36
SMB1YER029C DRS1P32892 752 aaKnown RBP12.37□□□□□ -0.43
SMB1YER029C ISW2Q08773 1120 aa12.34□□□□□ -0.43
SMB1YER029C RPG1P38249 964 aaKnown RBP12.32□□□□□ -0.44
SMB1YER029C TSR3Q12094 313 aaKnown RBP12.32□□□□□ -0.44
SMB1YER029C MRPL32P25348 183 aa11.76□□□□□ -0.53
SMB1YER029C YGL015CP33199 130 aa11.59□□□□□ -0.55
SMB1YER029C DIP2Q12220 943 aaPredicted RBP11.29□□□□□ -0.6
SMB1YER029C RSE1Q04693 1361 aaKnown RBP11.25□□□□□ -0.61
SMB1YER029C BUD31P25337 157 aaPredicted RBP11.2□□□□□ -0.62
SMB1YER029C REB1P21538 810 aa11.09□□□□□ -0.63
SMB1YER029C RPL17AP05740 184 aaKnown RBP11.03□□□□□ -0.64
SMB1YER029C RPL17BP46990 184 aaKnown RBP11.03□□□□□ -0.64
SMB1YER029C CDC27P38042 758 aa10.99□□□□□ -0.65
SMB1YER029C MAP2P38174 421 aaKnown RBP10.8□□□□□ -0.68
SMB1YER029C UBP10P53874 792 aaPredicted RBP10.71□□□□□ -0.69
SMB1YER029C YKR023WP36119 530 aaKnown RBP10.62□□□□□ -0.71
SMB1YER029C SIS1P25294 352 aaKnown RBP10.6□□□□□ -0.71
SMB1YER029C DCD1P06773 312 aa10.52□□□□□ -0.73
SMB1YER029C HOP09932 586 aa10.48□□□□□ -0.73
SMB1YER029C AVT3P36062 692 aa10.46□□□□□ -0.73
SMB1YER029C SPT21P35209 758 aa10.38□□□□□ -0.75
SMB1YER029C TFC8Q12308 588 aa10.37□□□□□ -0.75
SMB1YER029C UBP9P39967 754 aa10.36□□□□□ -0.75
SMB1YER029C SCY1P53009 804 aa10.36□□□□□ -0.75
SMB1YER029C TIF4632P39936 914 aaKnown RBP10.31□□□□□ -0.76
SMB1YER029C TGL3P40308 642 aa10.26□□□□□ -0.77
SMB1YER029C SLX5P32828 619 aaKnown RBP10.24□□□□□ -0.77
SMB1YER029C BCH2P36122 765 aa10.02□□□□□ -0.81
SMB1YER029C YBL029C-AQ3E756 94 aa9.85□□□□□ -0.83
SMB1YER029C RIM101P33400 625 aa9.72□□□□□ -0.85
SMB1YER029C BDF1P35817 686 aa9.66□□□□□ -0.86
SMB1YER029C EPS1P40557 701 aa9.66□□□□□ -0.86
SMB1YER029C MST1P07236 462 aa9.65□□□□□ -0.86
SMB1YER029C BFR2Q06631 534 aaKnown RBP9.65□□□□□ -0.86
SMB1YER029C VNX1P42839 908 aa9.62□□□□□ -0.87
SMB1YER029C YOR238WQ08634 303 aa9.62□□□□□ -0.87
SMB1YER029C SPP1Q03012 353 aa9.55□□□□□ -0.88
SMB1YER029C WSC3Q12215 556 aa9.54□□□□□ -0.88
SMB1YER029C YJL171CP46992 396 aa9.46□□□□□ -0.9
SMB1YER029C AIR2Q12476 344 aaKnown RBP9.46□□□□□ -0.9
SMB1YER029C OXP1P28273 1286 aa9.41□□□□□ -0.9
SMB1YER029C PTP3P40048 928 aa9.36□□□□□ -0.91
SMB1YER029C FKH1P40466 484 aa9.36□□□□□ -0.91
SMB1YER029C YAP5P40574 245 aa9.36□□□□□ -0.91
SMB1YER029C NSR1P27476 414 aaKnown RBP RIP-Chip data9.34□□□□□ -0.91not detected
SMB1YER029C TIF11P38912 153 aaKnown RBP9.32□□□□□ -0.92
SMB1YER029C YIL055CP40523 627 aaKnown RBP9.28□□□□□ -0.92
SMB1YER029C GTT3P39996 337 aa9.24□□□□□ -0.93
SMB1YER029C LDB19Q12502 818 aa9.24□□□□□ -0.93
SMB1YER029C BBC1P47068 1157 aa9.22□□□□□ -0.93
SMB1YER029C BMT6Q12291 365 aa9.2□□□□□ -0.94
SMB1YER029C AI2P03876 854 aa9.16□□□□□ -0.94
SMB1YER029C ULI1P43604 169 aa9.16□□□□□ -0.94
SMB1YER029C PIB1Q06651 286 aa9.14□□□□□ -0.95
SMB1YER029C IOC2Q12072 812 aa9.12□□□□□ -0.95
SMB1YER029C RSM7P47150 247 aa9.11□□□□□ -0.95
SMB1YER029C YAH1Q12184 172 aaKnown RBP9.05□□□□□ -0.96
SMB1YER029C RTG1P32607 177 aa8.94□□□□□ -0.98
SMB1YER029C NCR1Q12200 1170 aa8.9□□□□□ -0.98
SMB1YER029C SET4P42948 560 aa8.89□□□□□ -0.99
SMB1YER029C TRP5P00931 707 aaKnown RBP8.86□□□□□ -0.99
SMB1YER029C EAP1P36041 632 aaKnown RBP8.86□□□□□ -0.99
SMB1YER029C MSB4Q12317 492 aa8.86□□□□□ -0.99
SMB1YER029C YOL036WQ08206 761 aa8.83□□□□□ -1
SMB1YER029C MRM1P25270 412 aa8.8□□□□□ -1
SMB1YER029C YNL035CP53962 389 aaKnown RBP8.76□□□□□ -1.01
SMB1YER029C YLR271WQ06152 274 aa8.75□□□□□ -1.01
SMB1YER029C SEC61P32915 480 aa8.74□□□□□ -1.01
SMB1YER029C PSD2P53037 1138 aaKnown RBP8.72□□□□□ -1.01
SMB1YER029C SAP30P38429 201 aa8.7□□□□□ -1.02
SMB1YER029C BCK2P33306 851 aa8.69□□□□□ -1.02
SMB1YER029C YFR006WP43590 535 aa8.68□□□□□ -1.02
SMB1YER029C TFG1P41895 735 aaPredicted RBP8.67□□□□□ -1.02
SMB1YER029C DBP1P24784 617 aaKnown RBP8.65□□□□□ -1.02
SMB1YER029C VMA1P17255 1071 aaKnown RBP8.6□□□□□ -1.03
SMB1YER029C YMR1P47147 688 aaKnown RBP RIP-Chip data8.6□□□□□ -1.03not detected
SMB1YER029C CHL1P22516 861 aaPredicted RBP8.57□□□□□ -1.04
SMB1YER029C VPS29P38759 282 aa8.57□□□□□ -1.04
SMB1YER029C DAN4P47179 1161 aa8.56□□□□□ -1.04
SMB1YER029C STS1P38637 319 aa8.55□□□□□ -1.04
SMB1YER029C YDL129WQ07555 291 aa8.53□□□□□ -1.04
SMB1YER029C PRE3P38624 215 aa8.52□□□□□ -1.05
SMB1YER029C SAM3Q08986 587 aa8.52□□□□□ -1.05
SMB1YER029C JIP4Q03361 876 aa8.47□□□□□ -1.05
SMB1YER029C RTG3P38165 486 aa8.45□□□□□ -1.06
SMB1YER029C VRP1P37370 817 aa8.44□□□□□ -1.06
SMB1YER029C DCW1P36091 449 aa8.43□□□□□ -1.06
SMB1YER029C YDR344CQ05510 147 aa8.43□□□□□ -1.06
SMB1YER029C CST9Q06032 482 aa8.42□□□□□ -1.06
SMB1YER029C GYP5Q12344 894 aa8.42□□□□□ -1.06
SMB1YER029C HTA1P04911 132 aaKnown RBP8.39□□□□□ -1.07
SMB1YER029C HTA2P04912 132 aa8.39□□□□□ -1.07
SMB1YER029C XDJ1P39102 459 aa8.38□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 42.8 ms