RNA–Protein interactions for RNA: YDR379C-A

SDH6, Transcript of Mitochondrial protein involved in assembly of succinate dehydrogenase, yeastyeast

Gene SDH6, Length 240 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SDH6YDR379C-A FAP1P53971 965 aa12.43□□□□□ -0.42
SDH6YDR379C-A MTC1P47018 478 aaKnown RBP12.1□□□□□ -0.47
SDH6YDR379C-A PRY3P47033 881 aa11.73□□□□□ -0.53
SDH6YDR379C-A AAD16Q02895 342 aa11.05□□□□□ -0.64
SDH6YDR379C-A YCK3P39962 524 aa10.97□□□□□ -0.65
SDH6YDR379C-A PRI1P10363 409 aa10.94□□□□□ -0.66
SDH6YDR379C-A HAA1Q12753 694 aaKnown RBP10.9□□□□□ -0.66
SDH6YDR379C-A ISW2Q08773 1120 aa10.34□□□□□ -0.75
SDH6YDR379C-A TSR3Q12094 313 aaKnown RBP10.29□□□□□ -0.76
SDH6YDR379C-A RPG1P38249 964 aaKnown RBP10.28□□□□□ -0.76
SDH6YDR379C-A DRS1P32892 752 aaKnown RBP10.01□□□□□ -0.81
SDH6YDR379C-A MRPL32P25348 183 aa9.91□□□□□ -0.82
SDH6YDR379C-A YGL015CP33199 130 aa9.86□□□□□ -0.83
SDH6YDR379C-A BUD31P25337 157 aaPredicted RBP9.59□□□□□ -0.87
SDH6YDR379C-A RSE1Q04693 1361 aaKnown RBP9.32□□□□□ -0.92
SDH6YDR379C-A DIP2Q12220 943 aaPredicted RBP9.24□□□□□ -0.93
SDH6YDR379C-A REB1P21538 810 aa9.21□□□□□ -0.94
SDH6YDR379C-A CDC27P38042 758 aa9.14□□□□□ -0.95
SDH6YDR379C-A RPL17AP05740 184 aaKnown RBP9.11□□□□□ -0.95
SDH6YDR379C-A RPL17BP46990 184 aaKnown RBP9.11□□□□□ -0.95
SDH6YDR379C-A SIS1P25294 352 aaKnown RBP9.06□□□□□ -0.96
SDH6YDR379C-A UBP10P53874 792 aaPredicted RBP9.04□□□□□ -0.96
SDH6YDR379C-A MAP2P38174 421 aaKnown RBP9.03□□□□□ -0.96
SDH6YDR379C-A UBP9P39967 754 aa8.85□□□□□ -0.99
SDH6YDR379C-A YKR023WP36119 530 aaKnown RBP8.8□□□□□ -1
SDH6YDR379C-A TIF4632P39936 914 aaKnown RBP8.72□□□□□ -1.01
SDH6YDR379C-A TGL3P40308 642 aa8.69□□□□□ -1.02
SDH6YDR379C-A DCD1P06773 312 aa8.65□□□□□ -1.02
SDH6YDR379C-A HOP09932 586 aa8.65□□□□□ -1.02
SDH6YDR379C-A SCY1P53009 804 aa8.62□□□□□ -1.03
SDH6YDR379C-A TFC8Q12308 588 aa8.61□□□□□ -1.03
SDH6YDR379C-A SLX5P32828 619 aaKnown RBP8.58□□□□□ -1.04
SDH6YDR379C-A SPT21P35209 758 aa8.57□□□□□ -1.04
SDH6YDR379C-A AVT3P36062 692 aa8.51□□□□□ -1.05
SDH6YDR379C-A BCH2P36122 765 aa8.29□□□□□ -1.08
SDH6YDR379C-A YBL029C-AQ3E756 94 aa8.26□□□□□ -1.09
SDH6YDR379C-A MST1P07236 462 aa8.14□□□□□ -1.11
SDH6YDR379C-A VNX1P42839 908 aa8.1□□□□□ -1.11
SDH6YDR379C-A YOR238WQ08634 303 aa8.08□□□□□ -1.12
SDH6YDR379C-A YJL171CP46992 396 aa8.04□□□□□ -1.12
SDH6YDR379C-A SPP1Q03012 353 aa8.04□□□□□ -1.12
SDH6YDR379C-A RIM101P33400 625 aa7.99□□□□□ -1.13
SDH6YDR379C-A BDF1P35817 686 aa7.99□□□□□ -1.13
SDH6YDR379C-A EPS1P40557 701 aa7.99□□□□□ -1.13
SDH6YDR379C-A AIR2Q12476 344 aaKnown RBP7.99□□□□□ -1.13
SDH6YDR379C-A WSC3Q12215 556 aa7.95□□□□□ -1.14
SDH6YDR379C-A FKH1P40466 484 aa7.91□□□□□ -1.14
SDH6YDR379C-A NSR1P27476 414 aaKnown RBP RIP-Chip data7.87□□□□□ -1.15 RIP-Chip
SDH6YDR379C-A TIF11P38912 153 aaKnown RBP7.86□□□□□ -1.15
SDH6YDR379C-A YAP5P40574 245 aa7.83□□□□□ -1.16
SDH6YDR379C-A BMT6Q12291 365 aa7.79□□□□□ -1.16
SDH6YDR379C-A LDB19Q12502 818 aa7.76□□□□□ -1.17
SDH6YDR379C-A GTT3P39996 337 aa7.73□□□□□ -1.17
SDH6YDR379C-A BFR2Q06631 534 aaKnown RBP7.7□□□□□ -1.18
SDH6YDR379C-A ULI1P43604 169 aa7.69□□□□□ -1.18
SDH6YDR379C-A OXP1P28273 1286 aa7.68□□□□□ -1.18
SDH6YDR379C-A PTP3P40048 928 aa7.68□□□□□ -1.18
SDH6YDR379C-A IOC2Q12072 812 aa7.65□□□□□ -1.18
SDH6YDR379C-A BBC1P47068 1157 aa7.64□□□□□ -1.19
SDH6YDR379C-A YIL055CP40523 627 aaKnown RBP7.63□□□□□ -1.19
SDH6YDR379C-A AI2P03876 854 aa7.53□□□□□ -1.2
SDH6YDR379C-A PIB1Q06651 286 aa7.5□□□□□ -1.21
SDH6YDR379C-A RTG1P32607 177 aa7.49□□□□□ -1.21
SDH6YDR379C-A RSM7P47150 247 aa7.49□□□□□ -1.21
SDH6YDR379C-A NCR1Q12200 1170 aa7.48□□□□□ -1.21
SDH6YDR379C-A EAP1P36041 632 aaKnown RBP7.47□□□□□ -1.21
SDH6YDR379C-A MSB4Q12317 492 aa7.46□□□□□ -1.22
SDH6YDR379C-A TRP5P00931 707 aaKnown RBP7.39□□□□□ -1.23
SDH6YDR379C-A SEC61P32915 480 aa7.37□□□□□ -1.23
SDH6YDR379C-A BCK2P33306 851 aa7.37□□□□□ -1.23
SDH6YDR379C-A SET4P42948 560 aa7.36□□□□□ -1.23
SDH6YDR379C-A YNL035CP53962 389 aaKnown RBP7.36□□□□□ -1.23
SDH6YDR379C-A YOL036WQ08206 761 aa7.35□□□□□ -1.23
SDH6YDR379C-A YAH1Q12184 172 aaKnown RBP7.33□□□□□ -1.24
SDH6YDR379C-A TFG1P41895 735 aaPredicted RBP7.31□□□□□ -1.24
SDH6YDR379C-A SAP30P38429 201 aa7.26□□□□□ -1.25
SDH6YDR379C-A CHL1P22516 861 aaPredicted RBP7.24□□□□□ -1.25
SDH6YDR379C-A RGA2Q06407 1009 aa7.21□□□□□ -1.26
SDH6YDR379C-A MRM1P25270 412 aa7.19□□□□□ -1.26
SDH6YDR379C-A PRE3P38624 215 aa7.17□□□□□ -1.26
SDH6YDR379C-A YDL129WQ07555 291 aa7.16□□□□□ -1.26
SDH6YDR379C-A DAN4P47179 1161 aa7.14□□□□□ -1.27
SDH6YDR379C-A PSD2P53037 1138 aaKnown RBP7.14□□□□□ -1.27
SDH6YDR379C-A DBP1P24784 617 aaKnown RBP7.12□□□□□ -1.27
SDH6YDR379C-A VMA1P17255 1071 aaKnown RBP7.11□□□□□ -1.27
SDH6YDR379C-A XDJ1P39102 459 aa7.11□□□□□ -1.27
SDH6YDR379C-A YMR1P47147 688 aaKnown RBP RIP-Chip data7.11□□□□□ -1.27not detected
SDH6YDR379C-A JIP4Q03361 876 aa7.11□□□□□ -1.27
SDH6YDR379C-A YFR006WP43590 535 aa7.1□□□□□ -1.27
SDH6YDR379C-A YLR271WQ06152 274 aa7.1□□□□□ -1.27
SDH6YDR379C-A SAM3Q08986 587 aa7.1□□□□□ -1.27
SDH6YDR379C-A VRP1P37370 817 aa7.09□□□□□ -1.27
SDH6YDR379C-A DPS1P04802 557 aaKnown RBP7.05□□□□□ -1.28
SDH6YDR379C-A VPS29P38759 282 aa7.04□□□□□ -1.28
SDH6YDR379C-A ABP1P15891 592 aaKnown RBP7□□□□□ -1.29
SDH6YDR379C-A STS1P38637 319 aa7□□□□□ -1.29
SDH6YDR379C-A HTA1P04911 132 aaKnown RBP6.98□□□□□ -1.29
SDH6YDR379C-A HTA2P04912 132 aa6.98□□□□□ -1.29
SDH6YDR379C-A PTC4P38089 393 aa6.98□□□□□ -1.29
SDH6YDR379C-A GYP5Q12344 894 aa6.98□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 56 ms