RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	DRS1	P32892	752 aa	Known RBP	15.13	■□□□□ 0.01
NSE3	YDR288W	MTC1	P47018	478 aa	Known RBP	14.89	□□□□□ -0.03
NSE3	YDR288W	FAP1	P53971	965 aa		13.63	□□□□□ -0.23
NSE3	YDR288W	BFR2	Q06631	534 aa	Known RBP	13.14	□□□□□ -0.31
NSE3	YDR288W	PRY3	P47033	881 aa		12.84	□□□□□ -0.35
NSE3	YDR288W	DIP2	Q12220	943 aa	Predicted RBP	12.84	□□□□□ -0.35
NSE3	YDR288W	AVT3	P36062	692 aa		12.61	□□□□□ -0.39
NSE3	YDR288W	AAD16	Q02895	342 aa		12.39	□□□□□ -0.43
NSE3	YDR288W	PRI1	P10363	409 aa		12.37	□□□□□ -0.43
NSE3	YDR288W	TFA1	P36100	482 aa		12.36	□□□□□ -0.43
NSE3	YDR288W	ISW2	Q08773	1120 aa		12.17	□□□□□ -0.46
NSE3	YDR288W	YCK3	P39962	524 aa		12.12	□□□□□ -0.47
NSE3	YDR288W	RSE1	Q04693	1361 aa	Known RBP	12.1	□□□□□ -0.47
NSE3	YDR288W	RPG1	P38249	964 aa	Known RBP	11.97	□□□□□ -0.49
NSE3	YDR288W	HAA1	Q12753	694 aa	Known RBP	11.96	□□□□□ -0.49
NSE3	YDR288W	TSR3	Q12094	313 aa	Known RBP	11.69	□□□□□ -0.54
NSE3	YDR288W	RPL17A	P05740	184 aa	Known RBP	11.63	□□□□□ -0.55
NSE3	YDR288W	RPL17B	P46990	184 aa	Known RBP	11.63	□□□□□ -0.55
NSE3	YDR288W	REB1	P21538	810 aa		11.53	□□□□□ -0.56
NSE3	YDR288W	MRPL32	P25348	183 aa		11.2	□□□□□ -0.62
NSE3	YDR288W	SPT21	P35209	758 aa		11.1	□□□□□ -0.63
NSE3	YDR288W	RIM101	P33400	625 aa		11.01	□□□□□ -0.65
NSE3	YDR288W	YGL015C	P33199	130 aa		10.94	□□□□□ -0.66
NSE3	YDR288W	PTP3	P40048	928 aa		10.8	□□□□□ -0.68
NSE3	YDR288W	YKR023W	P36119	530 aa	Known RBP	10.74	□□□□□ -0.69
NSE3	YDR288W	RQC2	Q12532	1038 aa	Known RBP	10.74	□□□□□ -0.69
NSE3	YDR288W	OXP1	P28273	1286 aa		10.66	□□□□□ -0.7
NSE3	YDR288W	YIL055C	P40523	627 aa	Known RBP	10.66	□□□□□ -0.7
NSE3	YDR288W	YAH1	Q12184	172 aa	Known RBP	10.63	□□□□□ -0.71
NSE3	YDR288W	SSP1	P38871	571 aa		10.62	□□□□□ -0.71
NSE3	YDR288W	HO	P09932	586 aa		10.59	□□□□□ -0.71
NSE3	YDR288W	TFC8	Q12308	588 aa		10.55	□□□□□ -0.72
NSE3	YDR288W	CDC27	P38042	758 aa		10.54	□□□□□ -0.72
NSE3	YDR288W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	10.51	□□□□□ -0.73	not detected
NSE3	YDR288W	DCD1	P06773	312 aa		10.5	□□□□□ -0.73
NSE3	YDR288W	RSM7	P47150	247 aa		10.41	□□□□□ -0.74
NSE3	YDR288W	YLR271W	Q06152	274 aa		10.41	□□□□□ -0.74
NSE3	YDR288W	BUD31	P25337	157 aa	Predicted RBP	10.35	□□□□□ -0.75
NSE3	YDR288W	MAP2	P38174	421 aa	Known RBP	10.29	□□□□□ -0.76
NSE3	YDR288W	UBP10	P53874	792 aa	Predicted RBP	10.28	□□□□□ -0.76
NSE3	YDR288W	DMA1	P38823	416 aa		10.27	□□□□□ -0.77
NSE3	YDR288W	BCH2	P36122	765 aa		10.26	□□□□□ -0.77
NSE3	YDR288W	MGA2	P40578	1113 aa		10.23	□□□□□ -0.77
NSE3	YDR288W	AI2	P03876	854 aa		10.22	□□□□□ -0.77
NSE3	YDR288W	BBC1	P47068	1157 aa		10.21	□□□□□ -0.77
NSE3	YDR288W	SCY1	P53009	804 aa		10.12	□□□□□ -0.79
NSE3	YDR288W	EPS1	P40557	701 aa		10.11	□□□□□ -0.79
NSE3	YDR288W	PSD2	P53037	1138 aa	Known RBP	10.1	□□□□□ -0.79
NSE3	YDR288W	CST9	Q06032	482 aa		10.1	□□□□□ -0.79
NSE3	YDR288W	BDF1	P35817	686 aa		10.02	□□□□□ -0.81
NSE3	YDR288W	MRM1	P25270	412 aa		9.93	□□□□□ -0.82
NSE3	YDR288W	SLX5	P32828	619 aa	Known RBP	9.93	□□□□□ -0.82
NSE3	YDR288W	TIF4632	P39936	914 aa	Known RBP	9.87	□□□□□ -0.83
NSE3	YDR288W	TGL3	P40308	642 aa		9.84	□□□□□ -0.83
NSE3	YDR288W	RTG3	P38165	486 aa		9.81	□□□□□ -0.84
NSE3	YDR288W	SIS1	P25294	352 aa	Known RBP	9.8	□□□□□ -0.84
NSE3	YDR288W	UBP9	P39967	754 aa		9.76	□□□□□ -0.85
NSE3	YDR288W	RCR1	P38212	213 aa		9.74	□□□□□ -0.85
NSE3	YDR288W	RAM2	P29703	316 aa		9.73	□□□□□ -0.85
NSE3	YDR288W	VPS29	P38759	282 aa		9.61	□□□□□ -0.87
NSE3	YDR288W	MAK11	P20484	414 aa	Known RBP	9.6	□□□□□ -0.87
NSE3	YDR288W	SET1	P38827	1080 aa	Known RBP	9.6	□□□□□ -0.87
NSE3	YDR288W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	9.6	□□□□□ -0.87	not detected
NSE3	YDR288W	SAS10	Q12136	610 aa	Predicted RBP	9.6	□□□□□ -0.87
NSE3	YDR288W	DBP1	P24784	617 aa	Known RBP	9.53	□□□□□ -0.88
NSE3	YDR288W	YOR238W	Q08634	303 aa		9.53	□□□□□ -0.88
NSE3	YDR288W	YAP5	P40574	245 aa		9.52	□□□□□ -0.89
NSE3	YDR288W	YFR006W	P43590	535 aa		9.51	□□□□□ -0.89
NSE3	YDR288W	MIF2	P35201	549 aa		9.49	□□□□□ -0.89
NSE3	YDR288W	STS1	P38637	319 aa		9.49	□□□□□ -0.89
NSE3	YDR288W	IFH1	P39520	1085 aa		9.49	□□□□□ -0.89
NSE3	YDR288W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	9.48	□□□□□ -0.89	not detected
NSE3	YDR288W	COQ8	P27697	501 aa		9.47	□□□□□ -0.89
NSE3	YDR288W	PIB1	Q06651	286 aa		9.46	□□□□□ -0.9
NSE3	YDR288W	VPS70	P47161	811 aa		9.45	□□□□□ -0.9
NSE3	YDR288W	CKB1	P43639	278 aa		9.39	□□□□□ -0.91
NSE3	YDR288W	YPR148C	Q06523	435 aa		9.39	□□□□□ -0.91
NSE3	YDR288W	SPB4	P25808	606 aa	Predicted RBP	9.37	□□□□□ -0.91
NSE3	YDR288W	NOP53	Q12080	455 aa	Known RBP	9.37	□□□□□ -0.91
NSE3	YDR288W	MST1	P07236	462 aa		9.34	□□□□□ -0.91
NSE3	YDR288W	LEU3	P08638	886 aa		9.34	□□□□□ -0.91
NSE3	YDR288W	EDS1	P38073	919 aa		9.34	□□□□□ -0.91
NSE3	YDR288W	GTT3	P39996	337 aa		9.34	□□□□□ -0.91
NSE3	YDR288W	YBL029C-A	Q3E756	94 aa		9.34	□□□□□ -0.91
NSE3	YDR288W	LEO1	P38439	464 aa		9.33	□□□□□ -0.92
NSE3	YDR288W	VMA1	P17255	1071 aa	Known RBP	9.32	□□□□□ -0.92
NSE3	YDR288W	PTC3	P34221	468 aa	Known RBP	9.3	□□□□□ -0.92
NSE3	YDR288W	ATH1	P48016	1211 aa		9.24	□□□□□ -0.93
NSE3	YDR288W	GRE2	Q12068	342 aa	Known RBP	9.23	□□□□□ -0.93
NSE3	YDR288W	PBS2	P08018	668 aa		9.21	□□□□□ -0.94
NSE3	YDR288W	REF2	P42073	533 aa	Predicted RBP	9.2	□□□□□ -0.94
NSE3	YDR288W	VNX1	P42839	908 aa		9.2	□□□□□ -0.94
NSE3	YDR288W	GYP5	Q12344	894 aa		9.19	□□□□□ -0.94
NSE3	YDR288W	SAM3	Q08986	587 aa		9.18	□□□□□ -0.94
NSE3	YDR288W	GUT1	P32190	709 aa		9.17	□□□□□ -0.94
NSE3	YDR288W	DSF2	P38213	736 aa		9.14	□□□□□ -0.95
NSE3	YDR288W	RPN1	P38764	993 aa	Known RBP	9.14	□□□□□ -0.95
NSE3	YDR288W	SET4	P42948	560 aa		9.13	□□□□□ -0.95
NSE3	YDR288W	WSC3	Q12215	556 aa		9.13	□□□□□ -0.95
NSE3	YDR288W	YOL036W	Q08206	761 aa		9.12	□□□□□ -0.95

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms