RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C MTC1P47018 478 aaKnown RBP13.24□□□□□ -0.29
SNU56YDR240C FAP1P53971 965 aa12.49□□□□□ -0.41
SNU56YDR240C DRS1P32892 752 aaKnown RBP11.82□□□□□ -0.52
SNU56YDR240C PRY3P47033 881 aa11.76□□□□□ -0.53
SNU56YDR240C PRI1P10363 409 aa11.46□□□□□ -0.57
SNU56YDR240C AAD16Q02895 342 aa11.46□□□□□ -0.57
SNU56YDR240C ISW2Q08773 1120 aa11.11□□□□□ -0.63
SNU56YDR240C YCK3P39962 524 aa11.06□□□□□ -0.64
SNU56YDR240C HAA1Q12753 694 aaKnown RBP11.05□□□□□ -0.64
SNU56YDR240C RPG1P38249 964 aaKnown RBP10.98□□□□□ -0.65
SNU56YDR240C TSR3Q12094 313 aaKnown RBP10.78□□□□□ -0.68
SNU56YDR240C DIP2Q12220 943 aaPredicted RBP10.56□□□□□ -0.72
SNU56YDR240C MRPL32P25348 183 aa10.39□□□□□ -0.75
SNU56YDR240C RSE1Q04693 1361 aaKnown RBP10.37□□□□□ -0.75
SNU56YDR240C YGL015CP33199 130 aa10.12□□□□□ -0.79
SNU56YDR240C REB1P21538 810 aa10.08□□□□□ -0.8
SNU56YDR240C RPL17AP05740 184 aaKnown RBP10.05□□□□□ -0.8
SNU56YDR240C RPL17BP46990 184 aaKnown RBP10.05□□□□□ -0.8
SNU56YDR240C AVT3P36062 692 aa10.04□□□□□ -0.8
SNU56YDR240C CDC27P38042 758 aa9.74□□□□□ -0.85
SNU56YDR240C BFR2Q06631 534 aaKnown RBP9.66□□□□□ -0.86
SNU56YDR240C YKR023WP36119 530 aaKnown RBP9.6□□□□□ -0.87
SNU56YDR240C SPT21P35209 758 aa9.59□□□□□ -0.87
SNU56YDR240C UBP10P53874 792 aaPredicted RBP9.59□□□□□ -0.87
SNU56YDR240C BUD31P25337 157 aaPredicted RBP9.51□□□□□ -0.89
SNU56YDR240C MAP2P38174 421 aaKnown RBP9.51□□□□□ -0.89
SNU56YDR240C TFC8Q12308 588 aa9.41□□□□□ -0.9
SNU56YDR240C HOP09932 586 aa9.39□□□□□ -0.91
SNU56YDR240C DCD1P06773 312 aa9.34□□□□□ -0.91
SNU56YDR240C SCY1P53009 804 aa9.23□□□□□ -0.93
SNU56YDR240C TIF4632P39936 914 aaKnown RBP9.21□□□□□ -0.94
SNU56YDR240C TGL3P40308 642 aa9.17□□□□□ -0.94
SNU56YDR240C SLX5P32828 619 aaKnown RBP9.16□□□□□ -0.94
SNU56YDR240C RIM101P33400 625 aa9.15□□□□□ -0.95
SNU56YDR240C BCH2P36122 765 aa9.08□□□□□ -0.96
SNU56YDR240C UBP9P39967 754 aa9.06□□□□□ -0.96
SNU56YDR240C SIS1P25294 352 aaKnown RBP9□□□□□ -0.97
SNU56YDR240C EPS1P40557 701 aa8.82□□□□□ -1
SNU56YDR240C OXP1P28273 1286 aa8.8□□□□□ -1
SNU56YDR240C BDF1P35817 686 aa8.8□□□□□ -1
SNU56YDR240C TFA1P36100 482 aa8.75□□□□□ -1.01
SNU56YDR240C MST1P07236 462 aa8.72□□□□□ -1.01
SNU56YDR240C PTP3P40048 928 aa8.71□□□□□ -1.01
SNU56YDR240C YIL055CP40523 627 aaKnown RBP8.7□□□□□ -1.02
SNU56YDR240C YOR238WQ08634 303 aa8.67□□□□□ -1.02
SNU56YDR240C NSR1P27476 414 aaKnown RBP RIP-Chip data8.64□□□□□ -1.03not detected
SNU56YDR240C YBL029C-AQ3E756 94 aa8.64□□□□□ -1.03
SNU56YDR240C BBC1P47068 1157 aa8.6□□□□□ -1.03
SNU56YDR240C RSM7P47150 247 aa8.57□□□□□ -1.04
SNU56YDR240C YAP5P40574 245 aa8.54□□□□□ -1.04
SNU56YDR240C AI2P03876 854 aa8.53□□□□□ -1.04
SNU56YDR240C VNX1P42839 908 aa8.53□□□□□ -1.04
SNU56YDR240C SPP1Q03012 353 aa8.46□□□□□ -1.05
SNU56YDR240C YAH1Q12184 172 aaKnown RBP8.46□□□□□ -1.05
SNU56YDR240C WSC3Q12215 556 aa8.42□□□□□ -1.06
SNU56YDR240C TIF11P38912 153 aaKnown RBP8.36□□□□□ -1.07
SNU56YDR240C GTT3P39996 337 aa8.36□□□□□ -1.07
SNU56YDR240C AIR2Q12476 344 aaKnown RBP8.32□□□□□ -1.08
SNU56YDR240C FKH1P40466 484 aa8.32□□□□□ -1.08
SNU56YDR240C YLR271WQ06152 274 aa8.32□□□□□ -1.08
SNU56YDR240C YJL171CP46992 396 aa8.3□□□□□ -1.08
SNU56YDR240C PSD2P53037 1138 aaKnown RBP8.27□□□□□ -1.09
SNU56YDR240C ULI1P43604 169 aa8.22□□□□□ -1.09
SNU56YDR240C LDB19Q12502 818 aa8.22□□□□□ -1.09
SNU56YDR240C PIB1Q06651 286 aa8.2□□□□□ -1.1
SNU56YDR240C IOC2Q12072 812 aa8.19□□□□□ -1.1
SNU56YDR240C MRM1P25270 412 aa8.19□□□□□ -1.1
SNU56YDR240C MSB4Q12317 492 aa8.17□□□□□ -1.1
SNU56YDR240C BMT6Q12291 365 aa8.14□□□□□ -1.11
SNU56YDR240C EAP1P36041 632 aaKnown RBP8.13□□□□□ -1.11
SNU56YDR240C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.13□□□□□ -1.11not detected
SNU56YDR240C SSP1P38871 571 aa8.08□□□□□ -1.12
SNU56YDR240C YMR1P47147 688 aaKnown RBP RIP-Chip data8.06□□□□□ -1.12not detected
SNU56YDR240C YOL036WQ08206 761 aa8.06□□□□□ -1.12
SNU56YDR240C SET4P42948 560 aa8.05□□□□□ -1.12
SNU56YDR240C RTG1P32607 177 aa8.03□□□□□ -1.12
SNU56YDR240C TRP5P00931 707 aaKnown RBP8.02□□□□□ -1.13
SNU56YDR240C DBP1P24784 617 aaKnown RBP8.02□□□□□ -1.13
SNU56YDR240C VPS29P38759 282 aa8.02□□□□□ -1.13
SNU56YDR240C RTG3P38165 486 aa8□□□□□ -1.13
SNU56YDR240C NCR1Q12200 1170 aa8□□□□□ -1.13
SNU56YDR240C YNL035CP53962 389 aaKnown RBP7.99□□□□□ -1.13
SNU56YDR240C VMA1P17255 1071 aaKnown RBP7.98□□□□□ -1.13
SNU56YDR240C CST9Q06032 482 aa7.98□□□□□ -1.13
SNU56YDR240C SEC61P32915 480 aa7.97□□□□□ -1.13
SNU56YDR240C MGA2P40578 1113 aa7.97□□□□□ -1.13
SNU56YDR240C YFR006WP43590 535 aa7.97□□□□□ -1.13
SNU56YDR240C SAM3Q08986 587 aa7.96□□□□□ -1.13
SNU56YDR240C STS1P38637 319 aa7.95□□□□□ -1.14
SNU56YDR240C TFG1P41895 735 aaPredicted RBP7.88□□□□□ -1.15
SNU56YDR240C ABP1P15891 592 aaKnown RBP7.87□□□□□ -1.15
SNU56YDR240C JIP4Q03361 876 aa7.85□□□□□ -1.15
SNU56YDR240C RCR1P38212 213 aa7.84□□□□□ -1.15
SNU56YDR240C DAN4P47179 1161 aa7.84□□□□□ -1.15
SNU56YDR240C GYP5Q12344 894 aa7.82□□□□□ -1.16
SNU56YDR240C SAP30P38429 201 aa7.81□□□□□ -1.16
SNU56YDR240C HTA1P04911 132 aaKnown RBP7.79□□□□□ -1.16
SNU56YDR240C HTA2P04912 132 aa7.79□□□□□ -1.16
SNU56YDR240C YDL129WQ07555 291 aa7.79□□□□□ -1.16
SNU56YDR240C CHL1P22516 861 aaPredicted RBP7.75□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms