RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeastyeast

Gene KIN28, Length 921 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
KIN28YDL108W MTC1P47018 478 aaKnown RBP14.42□□□□□ -0.1
KIN28YDL108W FAP1P53971 965 aa13.91□□□□□ -0.18
KIN28YDL108W PRY3P47033 881 aa13.12□□□□□ -0.31
KIN28YDL108W DRS1P32892 752 aaKnown RBP13.09□□□□□ -0.31
KIN28YDL108W AAD16Q02895 342 aa12.65□□□□□ -0.38
KIN28YDL108W PRI1P10363 409 aa12.63□□□□□ -0.39
KIN28YDL108W YCK3P39962 524 aa12.43□□□□□ -0.42
KIN28YDL108W HAA1Q12753 694 aaKnown RBP12.22□□□□□ -0.45
KIN28YDL108W ISW2Q08773 1120 aa12.1□□□□□ -0.47
KIN28YDL108W RPG1P38249 964 aaKnown RBP12.04□□□□□ -0.48
KIN28YDL108W TSR3Q12094 313 aaKnown RBP11.92□□□□□ -0.5
KIN28YDL108W MRPL32P25348 183 aa11.4□□□□□ -0.58
KIN28YDL108W DIP2Q12220 943 aaPredicted RBP11.4□□□□□ -0.58
KIN28YDL108W BFR2Q06631 534 aaKnown RBP11.37□□□□□ -0.59
KIN28YDL108W RSE1Q04693 1361 aaKnown RBP11.23□□□□□ -0.61
KIN28YDL108W YGL015CP33199 130 aa11.15□□□□□ -0.62
KIN28YDL108W RPL17AP05740 184 aaKnown RBP10.95□□□□□ -0.66
KIN28YDL108W REB1P21538 810 aa10.95□□□□□ -0.66
KIN28YDL108W RPL17BP46990 184 aaKnown RBP10.95□□□□□ -0.66
KIN28YDL108W AVT3P36062 692 aa10.93□□□□□ -0.66
KIN28YDL108W CDC27P38042 758 aa10.75□□□□□ -0.69
KIN28YDL108W TFA1P36100 482 aa10.69□□□□□ -0.7
KIN28YDL108W BUD31P25337 157 aaPredicted RBP10.61□□□□□ -0.71
KIN28YDL108W YKR023WP36119 530 aaKnown RBP10.52□□□□□ -0.73
KIN28YDL108W MAP2P38174 421 aaKnown RBP10.49□□□□□ -0.73
KIN28YDL108W UBP10P53874 792 aaPredicted RBP10.47□□□□□ -0.73
KIN28YDL108W SPT21P35209 758 aa10.43□□□□□ -0.74
KIN28YDL108W DCD1P06773 312 aa10.31□□□□□ -0.76
KIN28YDL108W HOP09932 586 aa10.31□□□□□ -0.76
KIN28YDL108W TFC8Q12308 588 aa10.28□□□□□ -0.76
KIN28YDL108W SCY1P53009 804 aa10.13□□□□□ -0.79
KIN28YDL108W TIF4632P39936 914 aaKnown RBP10.04□□□□□ -0.8
KIN28YDL108W TGL3P40308 642 aa10.03□□□□□ -0.8
KIN28YDL108W SIS1P25294 352 aaKnown RBP10.01□□□□□ -0.81
KIN28YDL108W SLX5P32828 619 aaKnown RBP10.01□□□□□ -0.81
KIN28YDL108W UBP9P39967 754 aa9.94□□□□□ -0.82
KIN28YDL108W BCH2P36122 765 aa9.93□□□□□ -0.82
KIN28YDL108W RIM101P33400 625 aa9.87□□□□□ -0.83
KIN28YDL108W EPS1P40557 701 aa9.61□□□□□ -0.87
KIN28YDL108W BDF1P35817 686 aa9.59□□□□□ -0.87
KIN28YDL108W OXP1P28273 1286 aa9.54□□□□□ -0.88
KIN28YDL108W MST1P07236 462 aa9.53□□□□□ -0.88
KIN28YDL108W YBL029C-AQ3E756 94 aa9.53□□□□□ -0.88
KIN28YDL108W YOR238WQ08634 303 aa9.44□□□□□ -0.9
KIN28YDL108W PTP3P40048 928 aa9.39□□□□□ -0.91
KIN28YDL108W VNX1P42839 908 aa9.37□□□□□ -0.91
KIN28YDL108W YIL055CP40523 627 aaKnown RBP9.34□□□□□ -0.91
KIN28YDL108W NSR1P27476 414 aaKnown RBP RIP-Chip data9.33□□□□□ -0.92not detected
KIN28YDL108W SPP1Q03012 353 aa9.28□□□□□ -0.92
KIN28YDL108W YAP5P40574 245 aa9.26□□□□□ -0.93
KIN28YDL108W WSC3Q12215 556 aa9.26□□□□□ -0.93
KIN28YDL108W BBC1P47068 1157 aa9.24□□□□□ -0.93
KIN28YDL108W RQC2Q12532 1038 aaKnown RBP9.24□□□□□ -0.93
KIN28YDL108W AI2P03876 854 aa9.23□□□□□ -0.93
KIN28YDL108W RSM7P47150 247 aa9.23□□□□□ -0.93
KIN28YDL108W SSP1P38871 571 aa9.19□□□□□ -0.94
KIN28YDL108W YAH1Q12184 172 aaKnown RBP9.19□□□□□ -0.94
KIN28YDL108W AIR2Q12476 344 aaKnown RBP9.18□□□□□ -0.94
KIN28YDL108W FKH1P40466 484 aa9.13□□□□□ -0.95
KIN28YDL108W TIF11P38912 153 aaKnown RBP9.12□□□□□ -0.95
KIN28YDL108W YJL171CP46992 396 aa9.09□□□□□ -0.95
KIN28YDL108W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.08□□□□□ -0.96not detected
KIN28YDL108W GTT3P39996 337 aa9.07□□□□□ -0.96
KIN28YDL108W YLR271WQ06152 274 aa9.01□□□□□ -0.97
KIN28YDL108W LDB19Q12502 818 aa9.01□□□□□ -0.97
KIN28YDL108W PIB1Q06651 286 aa8.99□□□□□ -0.97
KIN28YDL108W ULI1P43604 169 aa8.98□□□□□ -0.97
KIN28YDL108W IOC2Q12072 812 aa8.98□□□□□ -0.97
KIN28YDL108W BMT6Q12291 365 aa8.92□□□□□ -0.98
KIN28YDL108W PSD2P53037 1138 aaKnown RBP8.91□□□□□ -0.98
KIN28YDL108W DMA1P38823 416 aa8.86□□□□□ -0.99
KIN28YDL108W MRM1P25270 412 aa8.85□□□□□ -0.99
KIN28YDL108W MGA2P40578 1113 aa8.85□□□□□ -0.99
KIN28YDL108W MSB4Q12317 492 aa8.81□□□□□ -1
KIN28YDL108W RTG1P32607 177 aa8.78□□□□□ -1
KIN28YDL108W EAP1P36041 632 aaKnown RBP8.77□□□□□ -1.01
KIN28YDL108W SET4P42948 560 aa8.77□□□□□ -1.01
KIN28YDL108W YOL036WQ08206 761 aa8.77□□□□□ -1.01
KIN28YDL108W TRP5P00931 707 aaKnown RBP8.76□□□□□ -1.01
KIN28YDL108W CST9Q06032 482 aa8.75□□□□□ -1.01
KIN28YDL108W NCR1Q12200 1170 aa8.72□□□□□ -1.01
KIN28YDL108W DBP1P24784 617 aaKnown RBP8.68□□□□□ -1.02
KIN28YDL108W VPS29P38759 282 aa8.68□□□□□ -1.02
KIN28YDL108W YFR006WP43590 535 aa8.67□□□□□ -1.02
KIN28YDL108W YMR1P47147 688 aaKnown RBP RIP-Chip data8.67□□□□□ -1.02not detected
KIN28YDL108W YNL035CP53962 389 aaKnown RBP8.66□□□□□ -1.02
KIN28YDL108W VMA1P17255 1071 aaKnown RBP8.64□□□□□ -1.03
KIN28YDL108W SEC61P32915 480 aa8.64□□□□□ -1.03
KIN28YDL108W STS1P38637 319 aa8.63□□□□□ -1.03
KIN28YDL108W SAM3Q08986 587 aa8.6□□□□□ -1.03
KIN28YDL108W RTG3P38165 486 aa8.57□□□□□ -1.04
KIN28YDL108W SAP30P38429 201 aa8.53□□□□□ -1.04
KIN28YDL108W DAN4P47179 1161 aa8.53□□□□□ -1.04
KIN28YDL108W TFG1P41895 735 aaPredicted RBP8.51□□□□□ -1.05
KIN28YDL108W RCR1P38212 213 aa8.5□□□□□ -1.05
KIN28YDL108W BCK2P33306 851 aa8.46□□□□□ -1.06
KIN28YDL108W JIP4Q03361 876 aa8.46□□□□□ -1.06
KIN28YDL108W YDL129WQ07555 291 aa8.45□□□□□ -1.06
KIN28YDL108W GYP5Q12344 894 aa8.45□□□□□ -1.06
KIN28YDL108W CHL1P22516 861 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms