RNA–Protein interactions for RNA: ENST00000569924.1

CNOT1-221, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 493 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-221ENST00000569924 CHIC1Q5VXU3 224 aa10.21□□□□□ -0.77
CNOT1-221ENST00000569924 AEBP2Q6ZN18 517 aaPredicted RBP9.92□□□□□ -0.82
CNOT1-221ENST00000569924 PHF23Q9BUL5 403 aaPredicted RBP9.04□□□□□ -0.96
CNOT1-221ENST00000569924 PLPPR3Q6T4P5 718 aa8.53□□□□□ -1.04
CNOT1-221ENST00000569924 SENP3Q9H4L4 574 aaPredicted RBP8.33□□□□□ -1.08
CNOT1-221ENST00000569924 EHMT2Q96KQ7 1210 aa8.08□□□□□ -1.12
CNOT1-221ENST00000569924 KCNA4P22459 653 aa7.99□□□□□ -1.13
CNOT1-221ENST00000569924 ADRA2BP18089 450 aa7.95□□□□□ -1.14
CNOT1-221ENST00000569924 POTEDQ86YR6 584 aa7.81□□□□□ -1.16
CNOT1-221ENST00000569924 PPP6R1Q9UPN7 881 aa7.8□□□□□ -1.16
CNOT1-221ENST00000569924 CSRNP3Q8WYN3 585 aa7.78□□□□□ -1.16
CNOT1-221ENST00000569924 SLC4A1APQ9BWU0 796 aaKnown RBP7.71□□□□□ -1.18
CNOT1-221ENST00000569924 FOXD1Q16676 465 aa7.67□□□□□ -1.18
CNOT1-221ENST00000569924 PPP4R3CPQ6ZMV5 832 aa7.58□□□□□ -1.2
CNOT1-221ENST00000569924 NCBP3Q53F19 620 aaKnown RBP7.54□□□□□ -1.2
CNOT1-221ENST00000569924 SLC24A1O60721 1099 aa7.46□□□□□ -1.22
CNOT1-221ENST00000569924 NPM3O75607 178 aaKnown RBP7.42□□□□□ -1.22
CNOT1-221ENST00000569924 ZBTB22O15209 634 aa7.37□□□□□ -1.23
CNOT1-221ENST00000569924 PIAS4Q8N2W9 510 aaPredicted RBP7.34□□□□□ -1.23
CNOT1-221ENST00000569924 AMER1Q5JTC6 1135 aaPredicted RBP7.3□□□□□ -1.24
CNOT1-221ENST00000569924 RTN4Q9NQC3 1192 aaKnown RBP7.3□□□□□ -1.24
CNOT1-221ENST00000569924 CNKSR2Q8WXI2 1034 aa7.26□□□□□ -1.25
CNOT1-221ENST00000569924 NISCHQ9Y2I1 1504 aa7.26□□□□□ -1.25
CNOT1-221ENST00000569924 FOXD4L1Q9NU39 408 aa7.21□□□□□ -1.26
CNOT1-221ENST00000569924 SCAF1Q9H7N4 1312 aaKnown RBP7.17□□□□□ -1.26
CNOT1-221ENST00000569924 DNAJC5BQ9UF47 199 aa7.16□□□□□ -1.26
CNOT1-221ENST00000569924 MSH5O43196 834 aa7.01□□□□□ -1.29
CNOT1-221ENST00000569924 RNF216Q9NWF9 866 aaPredicted RBP6.99□□□□□ -1.29
CNOT1-221ENST00000569924 FKBP8Q14318 412 aa6.98□□□□□ -1.29
CNOT1-221ENST00000569924 ATXN8OSP0DMR3 200 aa6.94□□□□□ -1.3
CNOT1-221ENST00000569924 MAPK8IP2Q13387 824 aaPredicted RBP6.94□□□□□ -1.3
CNOT1-221ENST00000569924 SLC4A2P04920 1241 aa6.88□□□□□ -1.31
CNOT1-221ENST00000569924 MYCNP04198 464 aaPredicted RBP6.84□□□□□ -1.31
CNOT1-221ENST00000569924 HOXD11P31277 338 aaPredicted RBP6.82□□□□□ -1.32
CNOT1-221ENST00000569924 DMRT2Q9Y5R5 561 aa6.74□□□□□ -1.33
CNOT1-221ENST00000569924 PLCB2Q00722 1185 aa6.71□□□□□ -1.34
CNOT1-221ENST00000569924 BCANQ96GW7 911 aa6.62□□□□□ -1.35
CNOT1-221ENST00000569924 ATF5Q9Y2D1 282 aaPredicted RBP6.62□□□□□ -1.35
CNOT1-221ENST00000569924 HAP1P54257 671 aaPredicted RBP6.6□□□□□ -1.35
CNOT1-221ENST00000569924 FBXO3Q9UK99 471 aa6.6□□□□□ -1.35
CNOT1-221ENST00000569924 ABCC9O60706 1549 aa6.58□□□□□ -1.36
CNOT1-221ENST00000569924 PRKCSHP14314 528 aaPredicted RBP6.57□□□□□ -1.36
CNOT1-221ENST00000569924 VSIG10Q8N0Z9 540 aa6.56□□□□□ -1.36
CNOT1-221ENST00000569924 TAOK2Q9UL54 1235 aa6.56□□□□□ -1.36
CNOT1-221ENST00000569924 CCDC180Q9P1Z9 1646 aa6.56□□□□□ -1.36
CNOT1-221ENST00000569924 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.55□□□□□ -1.36
CNOT1-221ENST00000569924 HNRNPUL2Q1KMD3 747 aaKnown RBP6.55□□□□□ -1.36
CNOT1-221ENST00000569924 SAMD1Q6SPF0 538 aaPredicted RBP6.55□□□□□ -1.36
CNOT1-221ENST00000569924 DNAJC5Q9H3Z4 198 aa6.52□□□□□ -1.37
CNOT1-221ENST00000569924 DCAF8L2P0C7V8 631 aa6.5□□□□□ -1.37
CNOT1-221ENST00000569924 SPDYE4A6NLX3 237 aa6.48□□□□□ -1.37
CNOT1-221ENST00000569924 VASPP50552 380 aaPredicted RBP6.48□□□□□ -1.37
CNOT1-221ENST00000569924 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.48□□□□□ -1.37
CNOT1-221ENST00000569924 PROM2Q8N271 834 aa6.46□□□□□ -1.38
CNOT1-221ENST00000569924 ZNF219Q9P2Y4 722 aaPredicted RBP6.46□□□□□ -1.38
CNOT1-221ENST00000569924 IFNLR1Q8IU57 520 aaPredicted RBP6.45□□□□□ -1.38
CNOT1-221ENST00000569924 PKD2Q13563 968 aa6.44□□□□□ -1.38
CNOT1-221ENST00000569924 U3KPZ7 1027 aaPredicted RBP6.44□□□□□ -1.38
CNOT1-221ENST00000569924 TPRNQ4KMQ1 711 aa6.43□□□□□ -1.38
CNOT1-221ENST00000569924 KDM2AQ9Y2K7 1162 aa6.41□□□□□ -1.38
CNOT1-221ENST00000569924 DCAF8L1A6NGE4 600 aa6.4□□□□□ -1.38
CNOT1-221ENST00000569924 BBXQ8WY36 941 aaPredicted RBP6.4□□□□□ -1.38
CNOT1-221ENST00000569924 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.4□□□□□ -1.38
CNOT1-221ENST00000569924 MKRN4PQ13434 485 aaPredicted RBP6.36□□□□□ -1.39
CNOT1-221ENST00000569924 FBLN2P98095 1184 aa6.35□□□□□ -1.39
CNOT1-221ENST00000569924 APLP2Q06481 763 aa6.35□□□□□ -1.39
CNOT1-221ENST00000569924 PAXIP1Q6ZW49 1069 aaPredicted RBP6.34□□□□□ -1.39
CNOT1-221ENST00000569924 CFAP44Q96MT7 982 aa6.32□□□□□ -1.4
CNOT1-221ENST00000569924 NPM1P06748 294 aaKnown RBP eCLIP6.31□□□□□ -1.4
CNOT1-221ENST00000569924 CACNB1Q02641 598 aaPredicted RBP6.31□□□□□ -1.4
CNOT1-221ENST00000569924 ECM2O94769 699 aaPredicted RBP6.28□□□□□ -1.4
CNOT1-221ENST00000569924 SPRYD3Q8NCJ5 442 aa6.28□□□□□ -1.4
CNOT1-221ENST00000569924 SPOCK2Q92563 424 aa6.28□□□□□ -1.4
CNOT1-221ENST00000569924 RB1CC1Q8TDY2 1594 aa6.27□□□□□ -1.41
CNOT1-221ENST00000569924 KLHL34Q8N239 644 aa6.25□□□□□ -1.41
CNOT1-221ENST00000569924 TSHZ2Q9NRE2 1034 aa6.25□□□□□ -1.41
CNOT1-221ENST00000569924 NACADO15069 1562 aa6.22□□□□□ -1.41
CNOT1-221ENST00000569924 RGL2O15211 777 aa6.21□□□□□ -1.42
CNOT1-221ENST00000569924 NBR1Q14596 966 aa6.21□□□□□ -1.42
CNOT1-221ENST00000569924 TIMELESSQ9UNS1 1208 aa6.21□□□□□ -1.42
CNOT1-221ENST00000569924 TULP1O00294 542 aaPredicted RBP6.19□□□□□ -1.42
CNOT1-221ENST00000569924 POLA2Q14181 598 aa6.18□□□□□ -1.42
CNOT1-221ENST00000569924 GTF3C3Q9Y5Q9 886 aa6.18□□□□□ -1.42
CNOT1-221ENST00000569924 ERICH6Q7L0X2 663 aa6.17□□□□□ -1.42
CNOT1-221ENST00000569924 ARXQ96QS3 562 aa6.17□□□□□ -1.42
CNOT1-221ENST00000569924 STAG3Q9UJ98 1225 aa6.17□□□□□ -1.42
CNOT1-221ENST00000569924 CHGAP10645 457 aaKnown RBP6.15□□□□□ -1.42
CNOT1-221ENST00000569924 TRHP20396 242 aaPredicted RBP6.14□□□□□ -1.43
CNOT1-221ENST00000569924 DAXXQ9UER7 740 aaPredicted RBP6.14□□□□□ -1.43
CNOT1-221ENST00000569924 MYO15BQ96JP2 1530 aa6.14□□□□□ -1.43
CNOT1-221ENST00000569924 PLCD3Q8N3E9 789 aa6.13□□□□□ -1.43
CNOT1-221ENST00000569924 ZBTB12Q9Y330 459 aaPredicted RBP6.12□□□□□ -1.43
CNOT1-221ENST00000569924 UNC13AQ9UPW8 1703 aa6.11□□□□□ -1.43
CNOT1-221ENST00000569924 PABPN1Q86U42 306 aaKnown RBP eCLIP6.1□□□□□ -1.433e-7■□□□□ 8.9
CNOT1-221ENST00000569924 SPINK5Q9NQ38 1064 aaPredicted RBP6.1□□□□□ -1.43
CNOT1-221ENST00000569924 TMEM132AQ24JP5 1023 aa6.08□□□□□ -1.44
CNOT1-221ENST00000569924 HS6ST3Q8IZP7 471 aa6.08□□□□□ -1.44
CNOT1-221ENST00000569924 MIER1Q8N108 512 aa6.08□□□□□ -1.44
CNOT1-221ENST00000569924 CIZ1Q9ULV3 898 aaPredicted RBP6.08□□□□□ -1.44
CNOT1-221ENST00000569924 BICRAQ9NZM4 1560 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms