RNA–Protein interactions for RNA: ENST00000555573.5

KTN1-223, Transcript of kinectin 1, human

TSL 2 BASIC

Gene KTN1, Length 1,712 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KTN1-223	ENST00000555573	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.19	■□□□□ 0.98
KTN1-223	ENST00000555573	CHIC1	Q5VXU3	224 aa		21.04	■□□□□ 0.96
KTN1-223	ENST00000555573	PHF23	Q9BUL5	403 aa	Predicted RBP	18.58	■□□□□ 0.57
KTN1-223	ENST00000555573	SENP3	Q9H4L4	574 aa	Predicted RBP	17.86	■□□□□ 0.45
KTN1-223	ENST00000555573	POTED	Q86YR6	584 aa		17.78	■□□□□ 0.44
KTN1-223	ENST00000555573	PLPPR3	Q6T4P5	718 aa		17.24	■□□□□ 0.35
KTN1-223	ENST00000555573	FOXD1	Q16676	465 aa		16.57	■□□□□ 0.24
KTN1-223	ENST00000555573	ADRA2B	P18089	450 aa		16.28	■□□□□ 0.2
KTN1-223	ENST00000555573	PPP6R1	Q9UPN7	881 aa		16.28	■□□□□ 0.2
KTN1-223	ENST00000555573	MSH5	O43196	834 aa		15.75	■□□□□ 0.11
KTN1-223	ENST00000555573	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.71	■□□□□ 0.1
KTN1-223	ENST00000555573	KCNA4	P22459	653 aa		15.37	■□□□□ 0.05
KTN1-223	ENST00000555573	PPP4R3CP	Q6ZMV5	832 aa		15.26	■□□□□ 0.03
KTN1-223	ENST00000555573	NCBP3	Q53F19	620 aa	Known RBP	14.92	□□□□□ -0.02
KTN1-223	ENST00000555573	SCAF1	Q9H7N4	1312 aa	Known RBP	14.81	□□□□□ -0.04
KTN1-223	ENST00000555573	NPM3	O75607	178 aa	Known RBP	14.77	□□□□□ -0.05
KTN1-223	ENST00000555573	EHMT2	Q96KQ7	1210 aa		14.75	□□□□□ -0.05
KTN1-223	ENST00000555573	CNKSR2	Q8WXI2	1034 aa		14.72	□□□□□ -0.05
KTN1-223	ENST00000555573	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.69	□□□□□ -0.06
KTN1-223	ENST00000555573	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.66	□□□□□ -0.06
KTN1-223	ENST00000555573	CSRNP3	Q8WYN3	585 aa		14.4	□□□□□ -0.1
KTN1-223	ENST00000555573	CACNB1	Q02641	598 aa	Predicted RBP	14.36	□□□□□ -0.11
KTN1-223	ENST00000555573	RNF216	Q9NWF9	866 aa	Predicted RBP	14.34	□□□□□ -0.11
KTN1-223	ENST00000555573	DMRT2	Q9Y5R5	561 aa		14.33	□□□□□ -0.12
KTN1-223	ENST00000555573	DNAJC5B	Q9UF47	199 aa		14.23	□□□□□ -0.13
KTN1-223	ENST00000555573	ZBTB22	O15209	634 aa		14.18	□□□□□ -0.14
KTN1-223	ENST00000555573	HOXD11	P31277	338 aa	Predicted RBP	14.18	□□□□□ -0.14
KTN1-223	ENST00000555573	FOXD4L1	Q9NU39	408 aa		14	□□□□□ -0.17
KTN1-223	ENST00000555573	SLC4A2	P04920	1241 aa		13.86	□□□□□ -0.19
KTN1-223	ENST00000555573	DCAF8L1	A6NGE4	600 aa		13.7	□□□□□ -0.22
KTN1-223	ENST00000555573	POTEH	Q6S545	545 aa		13.68	□□□□□ -0.22
KTN1-223	ENST00000555573	MYCN	P04198	464 aa	Predicted RBP	13.6	□□□□□ -0.23
KTN1-223	ENST00000555573	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.52	□□□□□ -0.25	6e-7	■□□□□ 9.4
KTN1-223	ENST00000555573	ATXN8OS	P0DMR3	200 aa		13.45	□□□□□ -0.26
KTN1-223	ENST00000555573		U3KPZ7	1027 aa	Predicted RBP	13.37	□□□□□ -0.27
KTN1-223	ENST00000555573	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.27	□□□□□ -0.28
KTN1-223	ENST00000555573	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.27	□□□□□ -0.29
KTN1-223	ENST00000555573	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.27	□□□□□ -0.29
KTN1-223	ENST00000555573	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.26	□□□□□ -0.29
KTN1-223	ENST00000555573	RNF39	Q9H2S5	420 aa		13.16	□□□□□ -0.3
KTN1-223	ENST00000555573	APLP2	Q06481	763 aa		13.02	□□□□□ -0.33
KTN1-223	ENST00000555573	C1QBP	Q07021	282 aa	Known RBP	13.01	□□□□□ -0.33
KTN1-223	ENST00000555573	FKBP8	Q14318	412 aa		12.98	□□□□□ -0.33
KTN1-223	ENST00000555573	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.98	□□□□□ -0.33
KTN1-223	ENST00000555573	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.9	□□□□□ -0.34
KTN1-223	ENST00000555573	TRH	P20396	242 aa	Predicted RBP	12.84	□□□□□ -0.35
KTN1-223	ENST00000555573	CAPN15	O75808	1086 aa		12.79	□□□□□ -0.36
KTN1-223	ENST00000555573	POLA2	Q14181	598 aa		12.72	□□□□□ -0.37
KTN1-223	ENST00000555573	MKRN4P	Q13434	485 aa	Predicted RBP	12.71	□□□□□ -0.38
KTN1-223	ENST00000555573	ABCB7	O75027	752 aa		12.62	□□□□□ -0.39
KTN1-223	ENST00000555573	FBLN2	P98095	1184 aa		12.62	□□□□□ -0.39
KTN1-223	ENST00000555573	SPDYE4	A6NLX3	237 aa		12.58	□□□□□ -0.4
KTN1-223	ENST00000555573	RTN4	Q9NQC3	1192 aa	Known RBP	12.52	□□□□□ -0.41
KTN1-223	ENST00000555573	DSG3	P32926	999 aa		12.5	□□□□□ -0.41
KTN1-223	ENST00000555573	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.48	□□□□□ -0.41
KTN1-223	ENST00000555573	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.48	□□□□□ -0.41
KTN1-223	ENST00000555573	PROM2	Q8N271	834 aa		12.42	□□□□□ -0.42
KTN1-223	ENST00000555573	FBXO3	Q9UK99	471 aa		12.36	□□□□□ -0.43
KTN1-223	ENST00000555573	OSCAR	Q8IYS5	282 aa		12.28	□□□□□ -0.44
KTN1-223	ENST00000555573	ZNF692	Q9BU19	519 aa	Predicted RBP	12.23	□□□□□ -0.45
KTN1-223	ENST00000555573	VASP	P50552	380 aa	Predicted RBP	12.22	□□□□□ -0.45
KTN1-223	ENST00000555573	SPDYE2B	A6NHP3	402 aa		12.2	□□□□□ -0.46
KTN1-223	ENST00000555573	SPDYE6	P0CI01	402 aa		12.2	□□□□□ -0.46
KTN1-223	ENST00000555573	SPDYE2	Q495Y8	402 aa		12.2	□□□□□ -0.46
KTN1-223	ENST00000555573	SSUH2	Q9Y2M2	353 aa		12.17	□□□□□ -0.46
KTN1-223	ENST00000555573	SP7	Q8TDD2	431 aa	Predicted RBP	12.13	□□□□□ -0.47
KTN1-223	ENST00000555573	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.11	□□□□□ -0.47
KTN1-223	ENST00000555573	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.1	□□□□□ -0.47
KTN1-223	ENST00000555573	STAG3	Q9UJ98	1225 aa		12	□□□□□ -0.49
KTN1-223	ENST00000555573	SLC24A1	O60721	1099 aa		11.91	□□□□□ -0.5
KTN1-223	ENST00000555573	KLHL34	Q8N239	644 aa		11.91	□□□□□ -0.5
KTN1-223	ENST00000555573	PLCD3	Q8N3E9	789 aa		11.9	□□□□□ -0.5
KTN1-223	ENST00000555573	PLSCR2	Q9NRY7	297 aa		11.9	□□□□□ -0.5
KTN1-223	ENST00000555573	MIER1	Q8N108	512 aa		11.88	□□□□□ -0.51
KTN1-223	ENST00000555573	PKD2	Q13563	968 aa		11.86	□□□□□ -0.51
KTN1-223	ENST00000555573	SPOCK2	Q92563	424 aa		11.86	□□□□□ -0.51
KTN1-223	ENST00000555573	RBM42	Q9BTD8	480 aa	Known RBP	11.85	□□□□□ -0.51
KTN1-223	ENST00000555573	AKT1S1	Q96B36	256 aa		11.8	□□□□□ -0.52
KTN1-223	ENST00000555573	PLEKHG5	O94827	1062 aa		11.74	□□□□□ -0.53
KTN1-223	ENST00000555573	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.74	□□□□□ -0.53
KTN1-223	ENST00000555573	DCAF8L2	P0C7V8	631 aa		11.72	□□□□□ -0.53
KTN1-223	ENST00000555573	REM2	Q8IYK8	340 aa	Predicted RBP	11.72	□□□□□ -0.53
KTN1-223	ENST00000555573	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.71	□□□□□ -0.54
KTN1-223	ENST00000555573	CLEC11A	Q9Y240	323 aa		11.7	□□□□□ -0.54
KTN1-223	ENST00000555573	ECM2	O94769	699 aa	Predicted RBP	11.69	□□□□□ -0.54
KTN1-223	ENST00000555573	CHRDL2	Q6WN34	429 aa		11.69	□□□□□ -0.54
KTN1-223	ENST00000555573	PRR29	P0C7W0	189 aa		11.63	□□□□□ -0.55
KTN1-223	ENST00000555573	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.62	□□□□□ -0.55
KTN1-223	ENST00000555573	CREBZF	Q9NS37	354 aa		11.6	□□□□□ -0.55
KTN1-223	ENST00000555573	PITPNM1	O00562	1244 aa		11.59	□□□□□ -0.55
KTN1-223	ENST00000555573	RGL2	O15211	777 aa		11.58	□□□□□ -0.56
KTN1-223	ENST00000555573	PLCB2	Q00722	1185 aa		11.56	□□□□□ -0.56
KTN1-223	ENST00000555573	MNX1	P50219	401 aa	Predicted RBP	11.55	□□□□□ -0.56
KTN1-223	ENST00000555573	NUBP1	P53384	320 aa		11.55	□□□□□ -0.56
KTN1-223	ENST00000555573	NPM1	P06748	294 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
KTN1-223	ENST00000555573	GSE1	Q14687	1217 aa		11.49	□□□□□ -0.57
KTN1-223	ENST00000555573	TRIM41	Q8WV44	630 aa		11.47	□□□□□ -0.57
KTN1-223	ENST00000555573	DCAF8	Q5TAQ9	597 aa		11.46	□□□□□ -0.57
KTN1-223	ENST00000555573	BBX	Q8WY36	941 aa	Predicted RBP	11.43	□□□□□ -0.58
KTN1-223	ENST00000555573	RASEF	Q8IZ41	740 aa		11.43	□□□□□ -0.58

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