RNA–Protein interactions for RNA: ENST00000554943.5

PPP4R3A-206, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 5 BASIC

Gene PPP4R3A, Length 3,369 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-206ENST00000554943 NISCHQ9Y2I1 1504 aa27.72■■■□□ 2.03
PPP4R3A-206ENST00000554943 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
PPP4R3A-206ENST00000554943 ZCCHC6Q5VYS8 1495 aaKnown RBP23.54■■□□□ 1.36
PPP4R3A-206ENST00000554943 DCAF1Q9Y4B6 1507 aa23.15■■□□□ 1.3
PPP4R3A-206ENST00000554943 MYO15BQ96JP2 1530 aa22.61■■□□□ 1.21
PPP4R3A-206ENST00000554943 SHROOM4Q9ULL8 1493 aa22.52■■□□□ 1.19
PPP4R3A-206ENST00000554943 ABCC9O60706 1549 aa22.23■■□□□ 1.15
PPP4R3A-206ENST00000554943 NACADO15069 1562 aa22.02■■□□□ 1.11
PPP4R3A-206ENST00000554943 SUPT5HO00267 1087 aaKnown RBP21.88■■□□□ 1.09
PPP4R3A-206ENST00000554943 SCRIBQ14160 1630 aa21.87■■□□□ 1.09
PPP4R3A-206ENST00000554943 CHIC1Q5VXU3 224 aa21.73■■□□□ 1.07
PPP4R3A-206ENST00000554943 RSF1Q96T23 1441 aaPredicted RBP21.71■■□□□ 1.07
PPP4R3A-206ENST00000554943 RB1CC1Q8TDY2 1594 aa21.64■■□□□ 1.05
PPP4R3A-206ENST00000554943 DCAF8L2P0C7V8 631 aa21.62■■□□□ 1.05
PPP4R3A-206ENST00000554943 UNC13AQ9UPW8 1703 aa21.61■■□□□ 1.05
PPP4R3A-206ENST00000554943 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
PPP4R3A-206ENST00000554943 MROH2BQ7Z745 1585 aa21.42■■□□□ 1.02
PPP4R3A-206ENST00000554943 BAZ1AQ9NRL2 1556 aaPredicted RBP21.41■■□□□ 1.02
PPP4R3A-206ENST00000554943 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.01
PPP4R3A-206ENST00000554943 WIZO95785 1651 aa21.34■■□□□ 1.01
PPP4R3A-206ENST00000554943 SMARCA4P51532 1647 aa21.21■□□□□ 0.99
PPP4R3A-206ENST00000554943 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
PPP4R3A-206ENST00000554943 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
PPP4R3A-206ENST00000554943 PEG3Q9GZU2 1588 aa21.14■□□□□ 0.97
PPP4R3A-206ENST00000554943 SMARCA2P51531 1590 aa21.01■□□□□ 0.95
PPP4R3A-206ENST00000554943 CCDC88BA6NC98 1476 aa20.82■□□□□ 0.92
PPP4R3A-206ENST00000554943 LOC105371045A0A1W2PR82 267 aa20.76■□□□□ 0.91
PPP4R3A-206ENST00000554943 HRCP23327 699 aa20.72■□□□□ 0.91
PPP4R3A-206ENST00000554943 TRIM41Q8WV44 630 aa20.6■□□□□ 0.89
PPP4R3A-206ENST00000554943 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
PPP4R3A-206ENST00000554943 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
PPP4R3A-206ENST00000554943 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
PPP4R3A-206ENST00000554943 PCGF6Q9BYE7 350 aa20.43■□□□□ 0.86
PPP4R3A-206ENST00000554943 TRIM26Q12899 539 aaPredicted RBP20.43■□□□□ 0.86
PPP4R3A-206ENST00000554943 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
PPP4R3A-206ENST00000554943 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
PPP4R3A-206ENST00000554943 EEA1Q15075 1411 aa20.41■□□□□ 0.86
PPP4R3A-206ENST00000554943 BIVM-ERCC5R4GMW8 1640 aa20.4■□□□□ 0.86
PPP4R3A-206ENST00000554943 KIF21BO75037 1637 aa20.37■□□□□ 0.85
PPP4R3A-206ENST00000554943 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
PPP4R3A-206ENST00000554943 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
PPP4R3A-206ENST00000554943 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
PPP4R3A-206ENST00000554943 NCAPD3P42695 1498 aa20.29■□□□□ 0.84
PPP4R3A-206ENST00000554943 SOGA1O94964 1423 aa20.28■□□□□ 0.84
PPP4R3A-206ENST00000554943 RUSC2Q8N2Y8 1516 aa20.25■□□□□ 0.83
PPP4R3A-206ENST00000554943 TNIKQ9UKE5 1360 aa20.23■□□□□ 0.83
PPP4R3A-206ENST00000554943 PABPN1Q86U42 306 aaKnown RBP eCLIP20.2■□□□□ 0.82
PPP4R3A-206ENST00000554943 CEP162Q5TB80 1403 aa20.13■□□□□ 0.81
PPP4R3A-206ENST00000554943 GOLGA3Q08378 1498 aa20.11■□□□□ 0.81
PPP4R3A-206ENST00000554943 FAM9AQ8IZU1 332 aaPredicted RBP20.06■□□□□ 0.8
PPP4R3A-206ENST00000554943 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
PPP4R3A-206ENST00000554943 CFTRP13569 1480 aa20.04■□□□□ 0.8
PPP4R3A-206ENST00000554943 ERICH3Q5RHP9 1530 aa20.04■□□□□ 0.8
PPP4R3A-206ENST00000554943 CUX1P39880 1505 aa20■□□□□ 0.79
PPP4R3A-206ENST00000554943 PPARGC1BQ86YN6 1023 aaKnown RBP19.99■□□□□ 0.79
PPP4R3A-206ENST00000554943 CSRNP3Q8WYN3 585 aa19.98■□□□□ 0.79
PPP4R3A-206ENST00000554943 PRXQ9BXM0 1461 aa19.95■□□□□ 0.78
PPP4R3A-206ENST00000554943 ZEB1P37275 1124 aaPredicted RBP19.91■□□□□ 0.78
PPP4R3A-206ENST00000554943 RAPGEF2Q9Y4G8 1499 aa19.87■□□□□ 0.77
PPP4R3A-206ENST00000554943 EHMT2Q96KQ7 1210 aa19.86■□□□□ 0.77
PPP4R3A-206ENST00000554943 VPS8Q8N3P4 1428 aa19.78■□□□□ 0.76
PPP4R3A-206ENST00000554943 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
PPP4R3A-206ENST00000554943 CLIP1P30622 1438 aa19.74■□□□□ 0.75
PPP4R3A-206ENST00000554943 ARAP1Q96P48 1450 aa19.73■□□□□ 0.75
PPP4R3A-206ENST00000554943 WDR97A6NE52 1622 aa19.7■□□□□ 0.74
PPP4R3A-206ENST00000554943 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
PPP4R3A-206ENST00000554943 KIF27Q86VH2 1401 aa19.6■□□□□ 0.73
PPP4R3A-206ENST00000554943 MAP3K1Q13233 1512 aa19.58■□□□□ 0.72
PPP4R3A-206ENST00000554943 DNMBPQ6XZF7 1577 aa19.57■□□□□ 0.72
PPP4R3A-206ENST00000554943 CUX2O14529 1486 aa19.53■□□□□ 0.72
PPP4R3A-206ENST00000554943 ARHGAP35Q9NRY4 1499 aa19.53■□□□□ 0.72
PPP4R3A-206ENST00000554943 FGD5Q6ZNL6 1462 aa19.51■□□□□ 0.71
PPP4R3A-206ENST00000554943 LAMC3Q9Y6N6 1575 aa19.49■□□□□ 0.71
PPP4R3A-206ENST00000554943 CFAP43Q8NDM7 1665 aa19.49■□□□□ 0.71
PPP4R3A-206ENST00000554943 ABCA10Q8WWZ4 1543 aa19.49■□□□□ 0.71
PPP4R3A-206ENST00000554943 IGF1RP08069 1367 aa19.48■□□□□ 0.71
PPP4R3A-206ENST00000554943 CUL7Q14999 1698 aa19.47■□□□□ 0.71
PPP4R3A-206ENST00000554943 UBTFP17480 764 aaKnown RBP19.47■□□□□ 0.71
PPP4R3A-206ENST00000554943 RRBP1Q9P2E9 1410 aaKnown RBP19.46■□□□□ 0.71
PPP4R3A-206ENST00000554943 CTTNBP2Q8WZ74 1663 aa19.45■□□□□ 0.7
PPP4R3A-206ENST00000554943 ABCA5Q8WWZ7 1642 aa19.44■□□□□ 0.7
PPP4R3A-206ENST00000554943 FANCD2Q9BXW9 1451 aa19.43■□□□□ 0.7
PPP4R3A-206ENST00000554943 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
PPP4R3A-206ENST00000554943 TIAM1Q13009 1591 aa19.38■□□□□ 0.69
PPP4R3A-206ENST00000554943 POLA1P09884 1462 aaPredicted RBP19.36■□□□□ 0.69
PPP4R3A-206ENST00000554943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.35■□□□□ 0.69
PPP4R3A-206ENST00000554943 SAMD9Q5K651 1589 aa19.32■□□□□ 0.68
PPP4R3A-206ENST00000554943 EFCAB5A4FU69 1503 aa19.31■□□□□ 0.68
PPP4R3A-206ENST00000554943 URB2Q14146 1524 aaKnown RBP19.31■□□□□ 0.68
PPP4R3A-206ENST00000554943 LRRIQ1Q96JM4 1722 aa19.31■□□□□ 0.68
PPP4R3A-206ENST00000554943 TARBP1Q13395 1621 aaKnown RBP19.3■□□□□ 0.68
PPP4R3A-206ENST00000554943 KIF21AQ7Z4S6 1674 aa19.3■□□□□ 0.68
PPP4R3A-206ENST00000554943 AQRO60306 1485 aaKnown RBP eCLIP19.29■□□□□ 0.688e-8■■■■□ 23.2
PPP4R3A-206ENST00000554943 NESP48681 1621 aa19.26■□□□□ 0.67
PPP4R3A-206ENST00000554943 PCF11O94913 1555 aaKnown RBP19.26■□□□□ 0.67
PPP4R3A-206ENST00000554943 CARMIL1Q5VZK9 1371 aa19.24■□□□□ 0.67
PPP4R3A-206ENST00000554943 CCER1Q8TC90 406 aaPredicted RBP19.21■□□□□ 0.67
PPP4R3A-206ENST00000554943 RAD54L2Q9Y4B4 1467 aa19.2■□□□□ 0.66
PPP4R3A-206ENST00000554943 CLSPNQ9HAW4 1339 aa19.2■□□□□ 0.66
PPP4R3A-206ENST00000554943 LRRC9Q6ZRR7 1453 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms