RNA–Protein interactions for RNA: ENST00000552208.1

LSM6P2-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 2, humanhuman

BASIC

Gene LSM6P2, Length 177 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P2-201ENST00000552208 AEBP2Q6ZN18 517 aaPredicted RBP16.65■□□□□ 0.26
LSM6P2-201ENST00000552208 CHIC1Q5VXU3 224 aa15.57■□□□□ 0.08
LSM6P2-201ENST00000552208 SENP3Q9H4L4 574 aaPredicted RBP14.35□□□□□ -0.11
LSM6P2-201ENST00000552208 POTEDQ86YR6 584 aa14.04□□□□□ -0.16
LSM6P2-201ENST00000552208 PHF23Q9BUL5 403 aaPredicted RBP14.04□□□□□ -0.16
LSM6P2-201ENST00000552208 FOXD1Q16676 465 aa13.47□□□□□ -0.25
LSM6P2-201ENST00000552208 MSH5O43196 834 aa12.95□□□□□ -0.34
LSM6P2-201ENST00000552208 PLPPR3Q6T4P5 718 aa12.74□□□□□ -0.37
LSM6P2-201ENST00000552208 PIAS4Q8N2W9 510 aaPredicted RBP12.37□□□□□ -0.43
LSM6P2-201ENST00000552208 ADRA2BP18089 450 aa11.97□□□□□ -0.49
LSM6P2-201ENST00000552208 PPP6R1Q9UPN7 881 aa11.95□□□□□ -0.5
LSM6P2-201ENST00000552208 KCNA4P22459 653 aa11.74□□□□□ -0.53
LSM6P2-201ENST00000552208 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
LSM6P2-201ENST00000552208 EHMT2Q96KQ7 1210 aa11.54□□□□□ -0.56
LSM6P2-201ENST00000552208 PPP4R3CPQ6ZMV5 832 aa11.32□□□□□ -0.6
LSM6P2-201ENST00000552208 CSRNP3Q8WYN3 585 aa11.25□□□□□ -0.61
LSM6P2-201ENST00000552208 DMRT2Q9Y5R5 561 aa11.25□□□□□ -0.61
LSM6P2-201ENST00000552208 SLC4A1APQ9BWU0 796 aaKnown RBP11.23□□□□□ -0.61
LSM6P2-201ENST00000552208 MAPK8IP2Q13387 824 aaPredicted RBP11.14□□□□□ -0.63
LSM6P2-201ENST00000552208 NCBP3Q53F19 620 aaKnown RBP11.14□□□□□ -0.63
LSM6P2-201ENST00000552208 NPM3O75607 178 aaKnown RBP11.04□□□□□ -0.64
LSM6P2-201ENST00000552208 SCAF1Q9H7N4 1312 aaKnown RBP11□□□□□ -0.65
LSM6P2-201ENST00000552208 RNF39Q9H2S5 420 aa10.96□□□□□ -0.65
LSM6P2-201ENST00000552208 CNKSR2Q8WXI2 1034 aa10.87□□□□□ -0.67
LSM6P2-201ENST00000552208 ZBTB22O15209 634 aa10.85□□□□□ -0.67
LSM6P2-201ENST00000552208 POTEHQ6S545 545 aa10.84□□□□□ -0.67
LSM6P2-201ENST00000552208 DCAF8L1A6NGE4 600 aa10.79□□□□□ -0.68
LSM6P2-201ENST00000552208 C1QBPQ07021 282 aaKnown RBP10.77□□□□□ -0.69
LSM6P2-201ENST00000552208 DNAJC5BQ9UF47 199 aa10.74□□□□□ -0.69
LSM6P2-201ENST00000552208 FOXD4L1Q9NU39 408 aa10.6□□□□□ -0.71
LSM6P2-201ENST00000552208 RNF216Q9NWF9 866 aaPredicted RBP10.58□□□□□ -0.72
LSM6P2-201ENST00000552208 HOXD11P31277 338 aaPredicted RBP10.52□□□□□ -0.73
LSM6P2-201ENST00000552208 SLC4A2P04920 1241 aa10.33□□□□□ -0.76
LSM6P2-201ENST00000552208 RTN4Q9NQC3 1192 aaKnown RBP10.22□□□□□ -0.77
LSM6P2-201ENST00000552208 ATXN8OSP0DMR3 200 aa10.21□□□□□ -0.77
LSM6P2-201ENST00000552208 AMER1Q5JTC6 1135 aaPredicted RBP10.18□□□□□ -0.78
LSM6P2-201ENST00000552208 MYCNP04198 464 aaPredicted RBP10.15□□□□□ -0.78
LSM6P2-201ENST00000552208 SLC24A1O60721 1099 aa10.13□□□□□ -0.79
LSM6P2-201ENST00000552208 FKBP8Q14318 412 aa10.05□□□□□ -0.8
LSM6P2-201ENST00000552208 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10□□□□□ -0.81
LSM6P2-201ENST00000552208 DSG3P32926 999 aa9.98□□□□□ -0.81
LSM6P2-201ENST00000552208 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
LSM6P2-201ENST00000552208 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.88□□□□□ -0.83
LSM6P2-201ENST00000552208 HNRNPUL2Q1KMD3 747 aaKnown RBP9.88□□□□□ -0.83
LSM6P2-201ENST00000552208 CAPN15O75808 1086 aa9.82□□□□□ -0.84
LSM6P2-201ENST00000552208 SAMD1Q6SPF0 538 aaPredicted RBP9.82□□□□□ -0.84
LSM6P2-201ENST00000552208 SPINK5Q9NQ38 1064 aaPredicted RBP9.8□□□□□ -0.84
LSM6P2-201ENST00000552208 SP7Q8TDD2 431 aaPredicted RBP9.77□□□□□ -0.85
LSM6P2-201ENST00000552208 U3KPZ7 1027 aaPredicted RBP9.77□□□□□ -0.85
LSM6P2-201ENST00000552208 APLP2Q06481 763 aa9.74□□□□□ -0.85
LSM6P2-201ENST00000552208 CHRDL2Q6WN34 429 aa9.66□□□□□ -0.86
LSM6P2-201ENST00000552208 ZNF219Q9P2Y4 722 aaPredicted RBP9.62□□□□□ -0.87
LSM6P2-201ENST00000552208 RBM42Q9BTD8 480 aaKnown RBP9.56□□□□□ -0.88
LSM6P2-201ENST00000552208 PROM2Q8N271 834 aa9.54□□□□□ -0.88
LSM6P2-201ENST00000552208 FBXO3Q9UK99 471 aa9.52□□□□□ -0.89
LSM6P2-201ENST00000552208 SPDYE4A6NLX3 237 aa9.51□□□□□ -0.89
LSM6P2-201ENST00000552208 ABCB7O75027 752 aa9.51□□□□□ -0.89
LSM6P2-201ENST00000552208 MKRN4PQ13434 485 aaPredicted RBP9.51□□□□□ -0.89
LSM6P2-201ENST00000552208 TRHP20396 242 aaPredicted RBP9.46□□□□□ -0.9
LSM6P2-201ENST00000552208 VASPP50552 380 aaPredicted RBP9.42□□□□□ -0.9
LSM6P2-201ENST00000552208 PLCB2Q00722 1185 aa9.41□□□□□ -0.9
LSM6P2-201ENST00000552208 IFNLR1Q8IU57 520 aaPredicted RBP9.36□□□□□ -0.91
LSM6P2-201ENST00000552208 FBLN2P98095 1184 aa9.34□□□□□ -0.91
LSM6P2-201ENST00000552208 HAX1O00165 279 aa9.31□□□□□ -0.92
LSM6P2-201ENST00000552208 ZBTB12Q9Y330 459 aaPredicted RBP9.3□□□□□ -0.92
LSM6P2-201ENST00000552208 PKD2Q13563 968 aa9.29□□□□□ -0.92
LSM6P2-201ENST00000552208 POLA2Q14181 598 aa9.29□□□□□ -0.92
LSM6P2-201ENST00000552208 PIP4P2Q8N4L2 257 aa9.25□□□□□ -0.93
LSM6P2-201ENST00000552208 PLSCR2Q9NRY7 297 aa9.25□□□□□ -0.93
LSM6P2-201ENST00000552208 HAP1P54257 671 aaPredicted RBP9.19□□□□□ -0.94
LSM6P2-201ENST00000552208 AKT1S1Q96B36 256 aa9.16□□□□□ -0.94
LSM6P2-201ENST00000552208 DCAF8L2P0C7V8 631 aa9.15□□□□□ -0.94
LSM6P2-201ENST00000552208 LHX8Q68G74 356 aa9.15□□□□□ -0.94
LSM6P2-201ENST00000552208 VSIG10Q8N0Z9 540 aa9.15□□□□□ -0.94
LSM6P2-201ENST00000552208 EVX2Q03828 476 aa9.12□□□□□ -0.95
LSM6P2-201ENST00000552208 SPOCK2Q92563 424 aa9.11□□□□□ -0.95
LSM6P2-201ENST00000552208 BCANQ96GW7 911 aa9.1□□□□□ -0.95
LSM6P2-201ENST00000552208 NPM1P06748 294 aaKnown RBP eCLIP9.08□□□□□ -0.96
LSM6P2-201ENST00000552208 FXR2P51116 673 aaKnown RBP eCLIP9.08□□□□□ -0.96
LSM6P2-201ENST00000552208 BBXQ8WY36 941 aaPredicted RBP9.08□□□□□ -0.96
LSM6P2-201ENST00000552208 REM2Q8IYK8 340 aaPredicted RBP9.06□□□□□ -0.96
LSM6P2-201ENST00000552208 STAG3Q9UJ98 1225 aa9.05□□□□□ -0.96
LSM6P2-201ENST00000552208 KDM2AQ9Y2K7 1162 aa9.05□□□□□ -0.96
LSM6P2-201ENST00000552208 ECM2O94769 699 aaPredicted RBP9.04□□□□□ -0.96
LSM6P2-201ENST00000552208 KLHL34Q8N239 644 aa9.04□□□□□ -0.96
LSM6P2-201ENST00000552208 TAOK2Q9UL54 1235 aa9.03□□□□□ -0.96
LSM6P2-201ENST00000552208 SPDYE2BA6NHP3 402 aa9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 SPDYE6P0CI01 402 aa9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 PRKCSHP14314 528 aaPredicted RBP9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 SPDYE2Q495Y8 402 aa9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 SSUH2Q9Y2M2 353 aa9.02□□□□□ -0.97
LSM6P2-201ENST00000552208 ZNF692Q9BU19 519 aaPredicted RBP9.01□□□□□ -0.97
LSM6P2-201ENST00000552208 RGL2O15211 777 aa8.99□□□□□ -0.97
LSM6P2-201ENST00000552208 PAXIP1Q6ZW49 1069 aaPredicted RBP8.97□□□□□ -0.97
LSM6P2-201ENST00000552208 PITPNM1O00562 1244 aa8.96□□□□□ -0.98
LSM6P2-201ENST00000552208 PLCD3Q8N3E9 789 aa8.95□□□□□ -0.98
LSM6P2-201ENST00000552208 OSCARQ8IYS5 282 aa8.94□□□□□ -0.98
LSM6P2-201ENST00000552208 PABPN1Q86U42 306 aaKnown RBP eCLIP8.92□□□□□ -0.98
LSM6P2-201ENST00000552208 CFAP44Q96MT7 982 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms