RNA–Protein interactions for RNA: ENST00000535302.6

SPG11-203, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-203ENST00000535302 DCAF8L2P0C7V8 631 aa22.24■■□□□ 1.15
SPG11-203ENST00000535302 SUPT5HO00267 1087 aaKnown RBP20.96■□□□□ 0.95
SPG11-203ENST00000535302 EHMT2Q96KQ7 1210 aa20.96■□□□□ 0.95
SPG11-203ENST00000535302 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
SPG11-203ENST00000535302 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
SPG11-203ENST00000535302 NISCHQ9Y2I1 1504 aa20.09■□□□□ 0.81
SPG11-203ENST00000535302 PELP1Q8IZL8 1130 aaKnown RBP20.02■□□□□ 0.8
SPG11-203ENST00000535302 FAM9AQ8IZU1 332 aaPredicted RBP19.94■□□□□ 0.78
SPG11-203ENST00000535302 RANGAP1P46060 587 aaPredicted RBP19.8■□□□□ 0.76
SPG11-203ENST00000535302 APLP2Q06481 763 aa19.79■□□□□ 0.76
SPG11-203ENST00000535302 ERICH6Q7L0X2 663 aa19.75■□□□□ 0.75
SPG11-203ENST00000535302 PCGF6Q9BYE7 350 aa19.56■□□□□ 0.72
SPG11-203ENST00000535302 ATP1B4Q9UN42 357 aaPredicted RBP19.51■□□□□ 0.71
SPG11-203ENST00000535302 MYT1Q01538 1121 aa19.47■□□□□ 0.71
SPG11-203ENST00000535302 YTHDC1Q96MU7 727 aaKnown RBP19.36■□□□□ 0.69
SPG11-203ENST00000535302 CCER1Q8TC90 406 aaPredicted RBP19.2■□□□□ 0.66
SPG11-203ENST00000535302 TRIM41Q8WV44 630 aa19.19■□□□□ 0.66
SPG11-203ENST00000535302 PPARGC1BQ86YN6 1023 aaKnown RBP19.18■□□□□ 0.66
SPG11-203ENST00000535302 UBTFP17480 764 aaKnown RBP19.11■□□□□ 0.65
SPG11-203ENST00000535302 CENPBP07199 599 aaPredicted RBP19.07■□□□□ 0.64
SPG11-203ENST00000535302 CNGB1Q14028 1251 aaPredicted RBP19.07■□□□□ 0.64
SPG11-203ENST00000535302 POLR3GLQ9BT43 218 aa18.96■□□□□ 0.63
SPG11-203ENST00000535302 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
SPG11-203ENST00000535302 NEFLP07196 543 aa18.94■□□□□ 0.62
SPG11-203ENST00000535302 MYT1LQ9UL68 1186 aa18.83■□□□□ 0.6
SPG11-203ENST00000535302 ITGAEP38570 1179 aa18.78■□□□□ 0.6
SPG11-203ENST00000535302 ZEB1P37275 1124 aaPredicted RBP18.78■□□□□ 0.6
SPG11-203ENST00000535302 DAXXQ9UER7 740 aaPredicted RBP18.72■□□□□ 0.59
SPG11-203ENST00000535302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.67■□□□□ 0.58
SPG11-203ENST00000535302 HNRNPUL2Q1KMD3 747 aaKnown RBP18.67■□□□□ 0.58
SPG11-203ENST00000535302 SLC4A1APQ9BWU0 796 aaKnown RBP18.66■□□□□ 0.58
SPG11-203ENST00000535302 LOC105371045A0A1W2PR82 267 aa18.52■□□□□ 0.56
SPG11-203ENST00000535302 BCL11AQ9H165 835 aa18.44■□□□□ 0.54
SPG11-203ENST00000535302 TRIM26Q12899 539 aaPredicted RBP18.39■□□□□ 0.54
SPG11-203ENST00000535302 CLSPNQ9HAW4 1339 aa18.35■□□□□ 0.53
SPG11-203ENST00000535302 ZNF316A6NFI3 1004 aaPredicted RBP18.3■□□□□ 0.52
SPG11-203ENST00000535302 HRCP23327 699 aa18.3■□□□□ 0.52
SPG11-203ENST00000535302 SLC24A1O60721 1099 aa18.19■□□□□ 0.5
SPG11-203ENST00000535302 BCANQ96GW7 911 aa18.17■□□□□ 0.5
SPG11-203ENST00000535302 FAM50AQ14320 339 aaKnown RBP18.13■□□□□ 0.49
SPG11-203ENST00000535302 RTL5Q5HYW3 569 aaPredicted RBP18.12■□□□□ 0.49
SPG11-203ENST00000535302 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
SPG11-203ENST00000535302 NEUROD1Q13562 356 aa18.06■□□□□ 0.48
SPG11-203ENST00000535302 TRIM52Q96A61 297 aa18.04■□□□□ 0.48
SPG11-203ENST00000535302 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
SPG11-203ENST00000535302 DIEXFQ68CQ4 756 aaKnown RBP17.93■□□□□ 0.46
SPG11-203ENST00000535302 ARID3CA6NKF2 412 aa17.92■□□□□ 0.46
SPG11-203ENST00000535302 FBLN2P98095 1184 aa17.91■□□□□ 0.46
SPG11-203ENST00000535302 ABCC9O60706 1549 aa17.86■□□□□ 0.45
SPG11-203ENST00000535302 PLPPR3Q6T4P5 718 aa17.79■□□□□ 0.44
SPG11-203ENST00000535302 ZBTB47Q9UFB7 747 aaPredicted RBP17.78■□□□□ 0.44
SPG11-203ENST00000535302 P3H3Q8IVL6 736 aa17.78■□□□□ 0.44
SPG11-203ENST00000535302 NPM2Q86SE8 214 aaKnown RBP17.72■□□□□ 0.43
SPG11-203ENST00000535302 CANXP27824 592 aaKnown RBP17.72■□□□□ 0.43
SPG11-203ENST00000535302 GTF3C3Q9Y5Q9 886 aa17.64■□□□□ 0.41
SPG11-203ENST00000535302 EIF5BO60841 1220 aaKnown RBP17.63■□□□□ 0.41
SPG11-203ENST00000535302 ANP32CO43423 234 aa17.61■□□□□ 0.41
SPG11-203ENST00000535302 ZNF777Q9ULD5 760 aaPredicted RBP17.61■□□□□ 0.41
SPG11-203ENST00000535302 CDK11AQ9UQ88 783 aaPredicted RBP17.6■□□□□ 0.41
SPG11-203ENST00000535302 ARXQ96QS3 562 aa17.58■□□□□ 0.41
SPG11-203ENST00000535302 SALL2Q9Y467 1007 aaPredicted RBP17.46■□□□□ 0.39
SPG11-203ENST00000535302 PLEKHG5O94827 1062 aa17.46■□□□□ 0.39
SPG11-203ENST00000535302 SENP3Q9H4L4 574 aaPredicted RBP17.45■□□□□ 0.38
SPG11-203ENST00000535302 CHGAP10645 457 aaKnown RBP17.4■□□□□ 0.38
SPG11-203ENST00000535302 A0A0G2JS52 829 aa17.38■□□□□ 0.37
SPG11-203ENST00000535302 NEFMP07197 916 aa17.38■□□□□ 0.37
SPG11-203ENST00000535302 HSP90AA1P07900 732 aaKnown RBP17.36■□□□□ 0.37
SPG11-203ENST00000535302 NBR1Q14596 966 aa17.33■□□□□ 0.37
SPG11-203ENST00000535302 ANP32AP39687 249 aaKnown RBP17.32■□□□□ 0.36
SPG11-203ENST00000535302 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
SPG11-203ENST00000535302 STAG3Q9UJ98 1225 aa17.27■□□□□ 0.36
SPG11-203ENST00000535302 TULP1O00294 542 aaPredicted RBP17.26■□□□□ 0.35
SPG11-203ENST00000535302 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
SPG11-203ENST00000535302 ESF1Q9H501 851 aaKnown RBP17.25■□□□□ 0.35
SPG11-203ENST00000535302 CHIC2Q9UKJ5 165 aa17.25■□□□□ 0.35
SPG11-203ENST00000535302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.24■□□□□ 0.352e-6■■■□□ 18.5
SPG11-203ENST00000535302 FAM9BQ8IZU0 186 aa17.23■□□□□ 0.35
SPG11-203ENST00000535302 ANP32BQ92688 251 aaKnown RBP17.22■□□□□ 0.35
SPG11-203ENST00000535302 TPRNQ4KMQ1 711 aa17.21■□□□□ 0.35
SPG11-203ENST00000535302 FKBP8Q14318 412 aa17.2■□□□□ 0.34
SPG11-203ENST00000535302 ZBTB7CA1YPR0 619 aa17.2■□□□□ 0.34
SPG11-203ENST00000535302 DDX10Q13206 875 aaKnown RBP17.17■□□□□ 0.34
SPG11-203ENST00000535302 SENP3-EIF4A1A0A087X0R7 540 aa17.16■□□□□ 0.34
SPG11-203ENST00000535302 ACIN1Q9UKV3 1341 aaKnown RBP17.16■□□□□ 0.34
SPG11-203ENST00000535302 HNRNPUQ00839 825 aaKnown RBP eCLIP17.14■□□□□ 0.33
SPG11-203ENST00000535302 HIRIP3Q9BW71 556 aaPredicted RBP17.13■□□□□ 0.33
SPG11-203ENST00000535302 IRX6P78412 446 aaPredicted RBP17.12■□□□□ 0.33
SPG11-203ENST00000535302 KDM2AQ9Y2K7 1162 aa17.12■□□□□ 0.33
SPG11-203ENST00000535302 SCRIBQ14160 1630 aa17.12■□□□□ 0.33
SPG11-203ENST00000535302 TONSLQ96HA7 1378 aa17.11■□□□□ 0.33
SPG11-203ENST00000535302 TAOK2Q9UL54 1235 aa17.1■□□□□ 0.33
SPG11-203ENST00000535302 NPM1P06748 294 aaKnown RBP eCLIP17.02■□□□□ 0.32
SPG11-203ENST00000535302 UPF2Q9HAU5 1272 aaKnown RBP17.01■□□□□ 0.31
SPG11-203ENST00000535302 NCBP3Q53F19 620 aaKnown RBP17■□□□□ 0.31
SPG11-203ENST00000535302 CDK11BP21127 795 aaKnown RBP16.98■□□□□ 0.31
SPG11-203ENST00000535302 C14orf37Q86TY3 774 aa16.97■□□□□ 0.31
SPG11-203ENST00000535302 TMC1Q8TDI8 760 aa16.95■□□□□ 0.3
SPG11-203ENST00000535302 WDR43Q15061 677 aaKnown RBP eCLIP16.91■□□□□ 0.3
SPG11-203ENST00000535302 KCNH8Q96L42 1107 aa16.91■□□□□ 0.3
SPG11-203ENST00000535302 RRP7BPQ9NSQ0 103 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms