RNA–Protein interactions for RNA: ENST00000534441.5

GMDS-AS1-213, humanhuman

TSL 3 BASIC

Gene GMDS-AS1, Length 738 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-AS1-213ENST00000534441 SF3B1O75533 1304 aaKnown RBP eCLIP11.41□□□□□ -0.581e-7■■■■■ 188.2
GMDS-AS1-213ENST00000534441 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.77□□□□□ -0.698e-7■■■■■ 124.2
GMDS-AS1-213ENST00000534441 AGGF1Q8N302 714 aaeCLIP9.01□□□□□ -0.974e-11■■■■■ 102.5
GMDS-AS1-213ENST00000534441 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.83□□□□□ -0.367e-8■■■■■ 72.9
GMDS-AS1-213ENST00000534441 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.09□□□□□ -0.633e-8■■■■■ 71.2
GMDS-AS1-213ENST00000534441 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.2□□□□□ -0.942e-6■■■■■ 62.9
GMDS-AS1-213ENST00000534441 HNRNPLP14866 589 aaKnown RBP eCLIP11.16□□□□□ -0.622e-7■■■■■ 53.5
GMDS-AS1-213ENST00000534441 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.38□□□□□ -0.752e-8■■■■■ 44.5
GMDS-AS1-213ENST00000534441 NIPBLQ6KC79 2804 aaeCLIP10.4□□□□□ -0.748e-8■■■■■ 41.9
GMDS-AS1-213ENST00000534441 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.45□□□□□ -0.94e-11■■■■■ 41.7
GMDS-AS1-213ENST00000534441 PTBP1P26599 531 aaKnown RBP eCLIP8.14□□□□□ -1.113e-7■■■■■ 39.7
GMDS-AS1-213ENST00000534441 TRA2AQ13595 282 aaKnown RBP eCLIP10.34□□□□□ -0.755e-9■■■■■ 39.6
GMDS-AS1-213ENST00000534441 DDX3XO00571 662 aaKnown RBP eCLIP9.6□□□□□ -0.871e-6■■■■■ 35.7
GMDS-AS1-213ENST00000534441 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.02□□□□□ -0.811e-6■■■■■ 34.3
GMDS-AS1-213ENST00000534441 XRCC6P12956 609 aaKnown RBP eCLIP10.99□□□□□ -0.656e-6■■■■■ 31.4
GMDS-AS1-213ENST00000534441 CDC40O60508 579 aaKnown RBP eCLIP9.66□□□□□ -0.863e-7■■■■■ 31.4
GMDS-AS1-213ENST00000534441 PABPC4Q13310 644 aaKnown RBP eCLIP12.94□□□□□ -0.343e-7■■■■■ 31.3
GMDS-AS1-213ENST00000534441 LARP4Q71RC2 724 aaKnown RBP eCLIP8.9□□□□□ -0.981e-6■■■■■ 31.2
GMDS-AS1-213ENST00000534441 DKC1O60832 514 aaKnown RBP eCLIP11.19□□□□□ -0.621e-6■■■■■ 30
GMDS-AS1-213ENST00000534441 GTF2F1P35269 517 aaKnown RBP eCLIP12.27□□□□□ -0.457e-7■■■■■ 29.3
GMDS-AS1-213ENST00000534441 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.56□□□□□ -1.041e-7■■■■■ 29.1
GMDS-AS1-213ENST00000534441 U2AF2P26368 475 aaKnown RBP eCLIP11.25□□□□□ -0.615e-6■■■■□ 25
GMDS-AS1-213ENST00000534441 NSUN2Q08J23 767 aaKnown RBP eCLIP9.92□□□□□ -0.821e-5■■■■□ 24.6
GMDS-AS1-213ENST00000534441 CSTF2P33240 577 aaKnown RBP eCLIP10.36□□□□□ -0.751e-6■■■■□ 24.2
GMDS-AS1-213ENST00000534441 MATR3P43243 847 aaKnown RBP eCLIP10.9□□□□□ -0.663e-8■■■■□ 23.5
GMDS-AS1-213ENST00000534441 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.11□□□□□ -0.954e-6■■■■□ 22.1
GMDS-AS1-213ENST00000534441 PCBP2Q15366 365 aaKnown RBP eCLIP9.74□□□□□ -0.857e-8■■■■□ 21.9
GMDS-AS1-213ENST00000534441 YBX3P16989 372 aaKnown RBP eCLIP15.37■□□□□ 0.057e-7■■■■□ 21.7
GMDS-AS1-213ENST00000534441 HNRNPMP52272 730 aaKnown RBP eCLIP17.13■□□□□ 0.331e-6■■■■□ 20.7
GMDS-AS1-213ENST00000534441 NCBP2P52298 156 aaKnown RBP eCLIP8.65□□□□□ -1.022e-8■■■■□ 20.4
GMDS-AS1-213ENST00000534441 RBFOX2O43251 390 aaKnown RBP eCLIP7.3□□□□□ -1.248e-6■■■■□ 20.3
GMDS-AS1-213ENST00000534441 KHSRPQ92945 711 aaKnown RBP eCLIP12.87□□□□□ -0.353e-6■■■■□ 20.1
GMDS-AS1-213ENST00000534441 ILF3Q12906 894 aaKnown RBP eCLIP10.2□□□□□ -0.783e-6■■■■□ 19.3
GMDS-AS1-213ENST00000534441 HLTFQ14527 1009 aaKnown RBP eCLIP10.34□□□□□ -0.751e-6■■■□□ 18.6
GMDS-AS1-213ENST00000534441 HNRNPCP07910 306 aaKnown RBP eCLIP8.99□□□□□ -0.979e-6■■■□□ 17.7
GMDS-AS1-213ENST00000534441 RBM22Q9NW64 420 aaKnown RBP eCLIP9.67□□□□□ -0.867e-8■■■□□ 17.4
GMDS-AS1-213ENST00000534441 PPIGQ13427 754 aaKnown RBP eCLIP12.78□□□□□ -0.365e-7■■■□□ 15.2
GMDS-AS1-213ENST00000534441 SAFB2Q14151 953 aaKnown RBP eCLIP15.52■□□□□ 0.085e-6■■■□□ 15.1
GMDS-AS1-213ENST00000534441 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.4□□□□□ -0.11e-8■■□□□ 13.4
GMDS-AS1-213ENST00000534441 TROVE2P10155 538 aaKnown RBP eCLIP9.18□□□□□ -0.943e-9■■□□□ 13.3
GMDS-AS1-213ENST00000534441 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.85□□□□□ -0.353e-6■■□□□ 13
GMDS-AS1-213ENST00000534441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.79□□□□□ -0.041e-6■■□□□ 12.2
GMDS-AS1-213ENST00000534441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.95□□□□□ -0.668e-9■■□□□ 11.8
GMDS-AS1-213ENST00000534441 QKIQ96PU8 341 aaKnown RBP eCLIP9.27□□□□□ -0.933e-6■□□□□ 10.7
GMDS-AS1-213ENST00000534441 EFTUD2Q15029 972 aaKnown RBP eCLIP9.12□□□□□ -0.957e-10■□□□□ 10.5
GMDS-AS1-213ENST00000534441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.231e-6■□□□□ 10.3
GMDS-AS1-213ENST00000534441 ZC3H11AO75152 810 aaKnown RBP eCLIP11.7□□□□□ -0.542e-6■□□□□ 9.4
Retrieved 47 of 47 RNA–protein pairs in 11.3 ms