RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 AEBP2Q6ZN18 517 aaPredicted RBP24.15■■□□□ 1.46
USP48-211ENST00000526044 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
USP48-211ENST00000526044 SENP3Q9H4L4 574 aaPredicted RBP20.8■□□□□ 0.92
USP48-211ENST00000526044 PHF23Q9BUL5 403 aaPredicted RBP20.45■□□□□ 0.86
USP48-211ENST00000526044 FOXD1Q16676 465 aa19.32■□□□□ 0.68
USP48-211ENST00000526044 MSH5O43196 834 aa18.3■□□□□ 0.52
USP48-211ENST00000526044 POTEDQ86YR6 584 aa18.19■□□□□ 0.5
USP48-211ENST00000526044 PLPPR3Q6T4P5 718 aa18.16■□□□□ 0.5
USP48-211ENST00000526044 PIAS4Q8N2W9 510 aaPredicted RBP18.07■□□□□ 0.48
USP48-211ENST00000526044 PPP6R1Q9UPN7 881 aa17.82■□□□□ 0.44
USP48-211ENST00000526044 ADRA2BP18089 450 aa17.8■□□□□ 0.44
USP48-211ENST00000526044 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.23
USP48-211ENST00000526044 MAPK8IP2Q13387 824 aaPredicted RBP16.4■□□□□ 0.22
USP48-211ENST00000526044 DMRT2Q9Y5R5 561 aa16.4■□□□□ 0.22
USP48-211ENST00000526044 CACNB1Q02641 598 aaPredicted RBP15.87■□□□□ 0.13
USP48-211ENST00000526044 DCAF8L1A6NGE4 600 aa15.85■□□□□ 0.13
USP48-211ENST00000526044 PPP4R3CPQ6ZMV5 832 aa15.85■□□□□ 0.13
USP48-211ENST00000526044 HOXD11P31277 338 aaPredicted RBP15.69■□□□□ 0.1
USP48-211ENST00000526044 CNKSR2Q8WXI2 1034 aa15.64■□□□□ 0.09
USP48-211ENST00000526044 RNF216Q9NWF9 866 aaPredicted RBP15.55■□□□□ 0.08
USP48-211ENST00000526044 RNF39Q9H2S5 420 aa15.5■□□□□ 0.07
USP48-211ENST00000526044 C1QBPQ07021 282 aaKnown RBP15.34■□□□□ 0.05
USP48-211ENST00000526044 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.04
USP48-211ENST00000526044 DNAJC5BQ9UF47 199 aa15.24■□□□□ 0.03
USP48-211ENST00000526044 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.05■□□□□ -09e-9■□□□□ 9.8
USP48-211ENST00000526044 NPM3O75607 178 aaKnown RBP14.9□□□□□ -0.02
USP48-211ENST00000526044 KCNA4P22459 653 aa14.84□□□□□ -0.03
USP48-211ENST00000526044 U3KPZ7 1027 aaPredicted RBP14.59□□□□□ -0.07
USP48-211ENST00000526044 CAPN15O75808 1086 aa14.56□□□□□ -0.08
USP48-211ENST00000526044 SPINK5Q9NQ38 1064 aaPredicted RBP14.45□□□□□ -0.1
USP48-211ENST00000526044 DSG3P32926 999 aa14.44□□□□□ -0.1
USP48-211ENST00000526044 APLP2Q06481 763 aa14.37□□□□□ -0.11
USP48-211ENST00000526044 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.26□□□□□ -0.13
USP48-211ENST00000526044 SLC4A2P04920 1241 aa14.26□□□□□ -0.13
USP48-211ENST00000526044 HNRNPUL2Q1KMD3 747 aaKnown RBP14.26□□□□□ -0.13
USP48-211ENST00000526044 TRHP20396 242 aaPredicted RBP14.25□□□□□ -0.13
USP48-211ENST00000526044 POTEHQ6S545 545 aa14.25□□□□□ -0.13
USP48-211ENST00000526044 ZNF219Q9P2Y4 722 aaPredicted RBP14.24□□□□□ -0.13
USP48-211ENST00000526044 SLC4A1APQ9BWU0 796 aaKnown RBP14.16□□□□□ -0.14
USP48-211ENST00000526044 ABCB7O75027 752 aa14.13□□□□□ -0.15
USP48-211ENST00000526044 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
USP48-211ENST00000526044 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
USP48-211ENST00000526044 MYCNP04198 464 aaPredicted RBP13.87□□□□□ -0.19
USP48-211ENST00000526044 POLA2Q14181 598 aa13.78□□□□□ -0.2
USP48-211ENST00000526044 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
USP48-211ENST00000526044 FOXD4L1Q9NU39 408 aa13.68□□□□□ -0.22
USP48-211ENST00000526044 ZBTB22O15209 634 aa13.63□□□□□ -0.23
USP48-211ENST00000526044 CHRDL2Q6WN34 429 aa13.63□□□□□ -0.23
USP48-211ENST00000526044 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
USP48-211ENST00000526044 ZBTB12Q9Y330 459 aaPredicted RBP13.56□□□□□ -0.24
USP48-211ENST00000526044 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
USP48-211ENST00000526044 ATF5Q9Y2D1 282 aaPredicted RBP13.43□□□□□ -0.26
USP48-211ENST00000526044 REM2Q8IYK8 340 aaPredicted RBP13.31□□□□□ -0.28
USP48-211ENST00000526044 OSCARQ8IYS5 282 aa13.31□□□□□ -0.28
USP48-211ENST00000526044 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
USP48-211ENST00000526044 ATXN8OSP0DMR3 200 aa13.23□□□□□ -0.29
USP48-211ENST00000526044 PIP4P2Q8N4L2 257 aa13.21□□□□□ -0.29
USP48-211ENST00000526044 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
USP48-211ENST00000526044 HAX1O00165 279 aa13.13□□□□□ -0.31
USP48-211ENST00000526044 FBLN2P98095 1184 aa13.13□□□□□ -0.31
USP48-211ENST00000526044 FXR2P51116 673 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP48-211ENST00000526044 SPDYE2BA6NHP3 402 aa13.07□□□□□ -0.32
USP48-211ENST00000526044 SPDYE6P0CI01 402 aa13.07□□□□□ -0.32
USP48-211ENST00000526044 SPDYE2Q495Y8 402 aa13.07□□□□□ -0.32
USP48-211ENST00000526044 SPDYE1Q8NFV5 336 aaPredicted RBP12.94□□□□□ -0.34
USP48-211ENST00000526044 CLEC11AQ9Y240 323 aa12.93□□□□□ -0.34
USP48-211ENST00000526044 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
USP48-211ENST00000526044 PRKAR2AP13861 404 aaKnown RBP12.86□□□□□ -0.35
USP48-211ENST00000526044 MKRN4PQ13434 485 aaPredicted RBP12.81□□□□□ -0.36
USP48-211ENST00000526044 EVX2Q03828 476 aa12.79□□□□□ -0.36
USP48-211ENST00000526044 SSUH2Q9Y2M2 353 aa12.79□□□□□ -0.36
USP48-211ENST00000526044 PRR29P0C7W0 189 aa12.69□□□□□ -0.38
USP48-211ENST00000526044 C19orf67A6NJJ6 358 aa12.68□□□□□ -0.38
USP48-211ENST00000526044 PABPN1Q86U42 306 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP48-211ENST00000526044 CHADLQ6NUI6 762 aa12.62□□□□□ -0.39
USP48-211ENST00000526044 GABBR2O75899 941 aa12.58□□□□□ -0.4
USP48-211ENST00000526044 CD44P16070 742 aaKnown RBP12.45□□□□□ -0.42
USP48-211ENST00000526044 FARP1Q9Y4F1 1045 aaPredicted RBP12.44□□□□□ -0.42
USP48-211ENST00000526044 LHX8Q68G74 356 aa12.43□□□□□ -0.42
USP48-211ENST00000526044 CLCN6P51797 869 aa12.41□□□□□ -0.42
USP48-211ENST00000526044 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
USP48-211ENST00000526044 SPDYE4A6NLX3 237 aa12.29□□□□□ -0.44
USP48-211ENST00000526044 DCBLD2Q96PD2 775 aa12.29□□□□□ -0.44
USP48-211ENST00000526044 FKBP8Q14318 412 aa12.28□□□□□ -0.44
USP48-211ENST00000526044 ZRANB1Q9UGI0 708 aa12.25□□□□□ -0.45
USP48-211ENST00000526044 POTEIP0CG38 1075 aa12.22□□□□□ -0.45
USP48-211ENST00000526044 ZNF579Q8NAF0 562 aaKnown RBP12.21□□□□□ -0.45
USP48-211ENST00000526044 CREBZFQ9NS37 354 aa12.2□□□□□ -0.46
USP48-211ENST00000526044 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
USP48-211ENST00000526044 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP48-211ENST00000526044 GALR2O43603 387 aaPredicted RBP12.06□□□□□ -0.48
USP48-211ENST00000526044 PROM2Q8N271 834 aa12.06□□□□□ -0.48
USP48-211ENST00000526044 PHF12Q96QT6 1004 aa11.99□□□□□ -0.49
USP48-211ENST00000526044 MNX1P50219 401 aaPredicted RBP11.9□□□□□ -0.5
USP48-211ENST00000526044 PLSCR2Q9NRY7 297 aa11.89□□□□□ -0.51
USP48-211ENST00000526044 FBXO3Q9UK99 471 aa11.89□□□□□ -0.51
USP48-211ENST00000526044 OTUD5Q96G74 571 aa11.86□□□□□ -0.51
USP48-211ENST00000526044 PLEKHG5O94827 1062 aa11.84□□□□□ -0.51
USP48-211ENST00000526044 MS4A3Q96HJ5 214 aa11.83□□□□□ -0.52
USP48-211ENST00000526044 POTEB2H3BUK9 544 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms