RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 CDC42SE1Q9NRR8 79 aa2.11□□□□□ -2.07
USP48-211ENST00000526044 FLGP20930 4061 aaPredicted RBP2.09□□□□□ -2.07
USP48-211ENST00000526044 CHKB-CPT1BH3BT56 60 aa2.09□□□□□ -2.07
USP48-211ENST00000526044 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
USP48-211ENST00000526044 Q5VV11 94 aa2.06□□□□□ -2.08
USP48-211ENST00000526044 COA5Q86WW8 74 aa2.06□□□□□ -2.08
USP48-211ENST00000526044 H0YAA0 97 aa2.03□□□□□ -2.08
USP48-211ENST00000526044 MT2AP02795 61 aa2.03□□□□□ -2.08
USP48-211ENST00000526044 MT1FP04733 61 aa2.01□□□□□ -2.09
USP48-211ENST00000526044 PRR15LQ9BU68 103 aa2□□□□□ -2.09
USP48-211ENST00000526044 CRIPTQ9P021 101 aa1.99□□□□□ -2.09
USP48-211ENST00000526044 A0A1B0GU69 56 aa1.98□□□□□ -2.09
USP48-211ENST00000526044 LINC01558Q9Y6Z2 57 aa1.97□□□□□ -2.09
USP48-211ENST00000526044 M0QZ58 72 aa1.95□□□□□ -2.1
USP48-211ENST00000526044 SPRR2GQ9BYE4 73 aa1.95□□□□□ -2.1
USP48-211ENST00000526044 KRTAP19-8Q3LI54 63 aa1.91□□□□□ -2.1
USP48-211ENST00000526044 SPATA8Q6RVD6 105 aa1.91□□□□□ -2.1
USP48-211ENST00000526044 UQCR11O14957 56 aa1.9□□□□□ -2.11
USP48-211ENST00000526044 KRTAP13-4Q3LI77 160 aa1.9□□□□□ -2.11
USP48-211ENST00000526044 PLAC4Q8WY50 150 aa1.9□□□□□ -2.11
USP48-211ENST00000526044 USH2AO75445 5202 aa1.89□□□□□ -2.11
USP48-211ENST00000526044 A0A0D9SG42 100 aa1.88□□□□□ -2.11
USP48-211ENST00000526044 INE1O15225 51 aa1.88□□□□□ -2.11
USP48-211ENST00000526044 MT1BP07438 61 aa1.88□□□□□ -2.11
USP48-211ENST00000526044 FSIP2Q5CZC0 6907 aa1.87□□□□□ -2.11
USP48-211ENST00000526044 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
USP48-211ENST00000526044 CRCT1Q9UGL9 99 aa1.87□□□□□ -2.11
USP48-211ENST00000526044 KRTAP19-6Q3LI70 58 aa1.85□□□□□ -2.11
USP48-211ENST00000526044 SSPOA2VEC9 5147 aa1.83□□□□□ -2.12
USP48-211ENST00000526044 KRTAP12-1P59990 96 aa1.83□□□□□ -2.12
USP48-211ENST00000526044 MT1XP80297 61 aa1.8□□□□□ -2.12
USP48-211ENST00000526044 FCGBPQ9Y6R7 5405 aaPredicted RBP1.77□□□□□ -2.13
USP48-211ENST00000526044 KRTAP12-3P60328 96 aa1.76□□□□□ -2.13
USP48-211ENST00000526044 KRTAP12-4P60329 112 aa1.76□□□□□ -2.13
USP48-211ENST00000526044 C10orf95Q9H7T3 257 aa1.75□□□□□ -2.13
USP48-211ENST00000526044 MACF1Q9UPN3 7388 aaKnown RBP1.74□□□□□ -2.13
USP48-211ENST00000526044 TNP1P09430 55 aa1.73□□□□□ -2.13
USP48-211ENST00000526044 KRTAP6-3Q3LI67 103 aa1.69□□□□□ -2.14
USP48-211ENST00000526044 KRTAP8-1Q8IUC2 63 aa1.68□□□□□ -2.14
USP48-211ENST00000526044 KMT2DO14686 5537 aa1.67□□□□□ -2.14
USP48-211ENST00000526044 SYNE2Q8WXH0 6885 aaKnown RBP1.66□□□□□ -2.14
USP48-211ENST00000526044 SPRR2FQ96RM1 72 aa1.63□□□□□ -2.15
USP48-211ENST00000526044 KRTAP19-5Q3LI72 72 aa1.61□□□□□ -2.15
USP48-211ENST00000526044 KRTAP19-7Q3SYF9 63 aa1.61□□□□□ -2.15
USP48-211ENST00000526044 MT1EP04732 61 aa1.58□□□□□ -2.16
USP48-211ENST00000526044 SPRR2EP22531 72 aa1.58□□□□□ -2.16
USP48-211ENST00000526044 SPRR2BP35325 72 aa1.58□□□□□ -2.16
USP48-211ENST00000526044 SPRR2AP35326 72 aa1.58□□□□□ -2.16
USP48-211ENST00000526044 MUC12Q9UKN1 5478 aa1.58□□□□□ -2.16
USP48-211ENST00000526044 MT1GP13640 62 aa1.55□□□□□ -2.16
USP48-211ENST00000526044 KRTAP19-3Q7Z4W3 81 aa1.55□□□□□ -2.16
USP48-211ENST00000526044 NEBP20929 6669 aa1.54□□□□□ -2.16
USP48-211ENST00000526044 MT1LQ93083 61 aa1.54□□□□□ -2.16
USP48-211ENST00000526044 MDN1Q9NU22 5596 aa1.52□□□□□ -2.17
USP48-211ENST00000526044 SPRR2DP22532 72 aa1.52□□□□□ -2.17
USP48-211ENST00000526044 MT1MQ8N339 61 aa1.5□□□□□ -2.17
USP48-211ENST00000526044 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
USP48-211ENST00000526044 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
USP48-211ENST00000526044 KRTAP20-1Q3LI63 56 aa1.48□□□□□ -2.17
USP48-211ENST00000526044 DSTQ03001 7570 aaKnown RBP1.48□□□□□ -2.17
USP48-211ENST00000526044 KRTAP2-1Q9BYU5 128 aa1.46□□□□□ -2.18
USP48-211ENST00000526044 HMCN1Q96RW7 5635 aa1.42□□□□□ -2.18
USP48-211ENST00000526044 MT4P47944 62 aa1.33□□□□□ -2.2
USP48-211ENST00000526044 SYNE1Q8NF91 8797 aaKnown RBP1.32□□□□□ -2.2
USP48-211ENST00000526044 MT1AP04731 61 aa1.32□□□□□ -2.2
USP48-211ENST00000526044 KRTAP6-1Q3LI64 71 aa1.3□□□□□ -2.2
USP48-211ENST00000526044 KRTAP20-2Q3LI61 65 aa1.26□□□□□ -2.21
USP48-211ENST00000526044 KRTAP6-2Q3LI66 62 aa1.22□□□□□ -2.21
USP48-211ENST00000526044 AHNAK2Q8IVF2 5795 aa1.18□□□□□ -2.22
USP48-211ENST00000526044 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.23
USP48-211ENST00000526044 KRTAP5-10Q6L8G5 202 aa1.13□□□□□ -2.23
USP48-211ENST00000526044 MUC5ACP98088 5654 aa0.98□□□□□ -2.25
USP48-211ENST00000526044 AHNAKQ09666 5890 aaKnown RBP0.94□□□□□ -2.26
USP48-211ENST00000526044 MUC5BQ9HC84 5762 aaPredicted RBP0.92□□□□□ -2.26
USP48-211ENST00000526044 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.27
USP48-211ENST00000526044 PRM1P04553 51 aa0.88□□□□□ -2.27
USP48-211ENST00000526044 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
USP48-211ENST00000526044 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 13.8 ms