RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 CHIC1Q5VXU3 224 aa21.71■■□□□ 1.07
NPHP3-211ENST00000515289 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
NPHP3-211ENST00000515289 PHF23Q9BUL5 403 aaPredicted RBP19.21■□□□□ 0.67
NPHP3-211ENST00000515289 PLPPR3Q6T4P5 718 aa18.14■□□□□ 0.49
NPHP3-211ENST00000515289 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
NPHP3-211ENST00000515289 EHMT2Q96KQ7 1210 aa17.26■□□□□ 0.35
NPHP3-211ENST00000515289 KCNA4P22459 653 aa17.04■□□□□ 0.32
NPHP3-211ENST00000515289 ADRA2BP18089 450 aa16.91■□□□□ 0.3
NPHP3-211ENST00000515289 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
NPHP3-211ENST00000515289 PPP6R1Q9UPN7 881 aa16.55■□□□□ 0.24
NPHP3-211ENST00000515289 SLC4A1APQ9BWU0 796 aaKnown RBP16.44■□□□□ 0.22
NPHP3-211ENST00000515289 FOXD1Q16676 465 aa16.27■□□□□ 0.2
NPHP3-211ENST00000515289 PPP4R3CPQ6ZMV5 832 aa16.11■□□□□ 0.17
NPHP3-211ENST00000515289 NCBP3Q53F19 620 aaKnown RBP16.04■□□□□ 0.16
NPHP3-211ENST00000515289 SLC24A1O60721 1099 aa15.97■□□□□ 0.15
NPHP3-211ENST00000515289 NPM3O75607 178 aaKnown RBP15.8■□□□□ 0.12
NPHP3-211ENST00000515289 ZBTB22O15209 634 aa15.71■□□□□ 0.11
NPHP3-211ENST00000515289 AMER1Q5JTC6 1135 aaPredicted RBP15.62■□□□□ 0.09
NPHP3-211ENST00000515289 PIAS4Q8N2W9 510 aaPredicted RBP15.62■□□□□ 0.09
NPHP3-211ENST00000515289 RTN4Q9NQC3 1192 aaKnown RBP15.59■□□□□ 0.09
NPHP3-211ENST00000515289 CNKSR2Q8WXI2 1034 aa15.43■□□□□ 0.06
NPHP3-211ENST00000515289 FOXD4L1Q9NU39 408 aa15.37■□□□□ 0.05
NPHP3-211ENST00000515289 DNAJC5BQ9UF47 199 aa15.26■□□□□ 0.03
NPHP3-211ENST00000515289 SCAF1Q9H7N4 1312 aaKnown RBP15.2■□□□□ 0.02
NPHP3-211ENST00000515289 FKBP8Q14318 412 aa14.88□□□□□ -0.03
NPHP3-211ENST00000515289 RNF216Q9NWF9 866 aaPredicted RBP14.85□□□□□ -0.03
NPHP3-211ENST00000515289 ATXN8OSP0DMR3 200 aa14.77□□□□□ -0.05
NPHP3-211ENST00000515289 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
NPHP3-211ENST00000515289 SLC4A2P04920 1241 aa14.64□□□□□ -0.07
NPHP3-211ENST00000515289 MYCNP04198 464 aaPredicted RBP14.59□□□□□ -0.07
NPHP3-211ENST00000515289 MSH5O43196 834 aa14.58□□□□□ -0.08
NPHP3-211ENST00000515289 HOXD11P31277 338 aaPredicted RBP14.49□□□□□ -0.09
NPHP3-211ENST00000515289 PLCB2Q00722 1185 aa14.34□□□□□ -0.11
NPHP3-211ENST00000515289 DMRT2Q9Y5R5 561 aa14.33□□□□□ -0.12
NPHP3-211ENST00000515289 BCANQ96GW7 911 aa14.15□□□□□ -0.14
NPHP3-211ENST00000515289 HAP1P54257 671 aaPredicted RBP14.1□□□□□ -0.15
NPHP3-211ENST00000515289 FBXO3Q9UK99 471 aa14.08□□□□□ -0.16
NPHP3-211ENST00000515289 ATF5Q9Y2D1 282 aaPredicted RBP14.08□□□□□ -0.16
NPHP3-211ENST00000515289 PRKCSHP14314 528 aaPredicted RBP14.02□□□□□ -0.17
NPHP3-211ENST00000515289 TAOK2Q9UL54 1235 aa14.01□□□□□ -0.17
NPHP3-211ENST00000515289 VSIG10Q8N0Z9 540 aa13.97□□□□□ -0.17
NPHP3-211ENST00000515289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-211ENST00000515289 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
NPHP3-211ENST00000515289 SAMD1Q6SPF0 538 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-211ENST00000515289 DCAF8L2P0C7V8 631 aa13.86□□□□□ -0.19
NPHP3-211ENST00000515289 VASPP50552 380 aaPredicted RBP13.84□□□□□ -0.19
NPHP3-211ENST00000515289 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
NPHP3-211ENST00000515289 PROM2Q8N271 834 aa13.79□□□□□ -0.2
NPHP3-211ENST00000515289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.76□□□□□ -0.21
NPHP3-211ENST00000515289 TPRNQ4KMQ1 711 aa13.75□□□□□ -0.21
NPHP3-211ENST00000515289 PKD2Q13563 968 aa13.73□□□□□ -0.21
NPHP3-211ENST00000515289 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-211ENST00000515289 ZNF219Q9P2Y4 722 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-211ENST00000515289 U3KPZ7 1027 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-211ENST00000515289 KDM2AQ9Y2K7 1162 aa13.66□□□□□ -0.22
NPHP3-211ENST00000515289 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.65□□□□□ -0.22
NPHP3-211ENST00000515289 BBXQ8WY36 941 aaPredicted RBP13.63□□□□□ -0.23
NPHP3-211ENST00000515289 POTEDQ86YR6 584 aa13.62□□□□□ -0.23
NPHP3-211ENST00000515289 DCAF8L1A6NGE4 600 aa13.56□□□□□ -0.24
NPHP3-211ENST00000515289 FBLN2P98095 1184 aa13.56□□□□□ -0.24
NPHP3-211ENST00000515289 MKRN4PQ13434 485 aaPredicted RBP13.55□□□□□ -0.24
NPHP3-211ENST00000515289 APLP2Q06481 763 aa13.52□□□□□ -0.25
NPHP3-211ENST00000515289 PAXIP1Q6ZW49 1069 aaPredicted RBP13.52□□□□□ -0.25
NPHP3-211ENST00000515289 CFAP44Q96MT7 982 aa13.46□□□□□ -0.25
NPHP3-211ENST00000515289 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
NPHP3-211ENST00000515289 ECM2O94769 699 aaPredicted RBP13.41□□□□□ -0.26
NPHP3-211ENST00000515289 SPOCK2Q92563 424 aa13.38□□□□□ -0.27
NPHP3-211ENST00000515289 SPRYD3Q8NCJ5 442 aa13.37□□□□□ -0.27
NPHP3-211ENST00000515289 TSHZ2Q9NRE2 1034 aa13.33□□□□□ -0.28
NPHP3-211ENST00000515289 TIMELESSQ9UNS1 1208 aa13.32□□□□□ -0.28
NPHP3-211ENST00000515289 KLHL34Q8N239 644 aa13.29□□□□□ -0.28
NPHP3-211ENST00000515289 NBR1Q14596 966 aa13.26□□□□□ -0.29
NPHP3-211ENST00000515289 TULP1O00294 542 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-211ENST00000515289 RGL2O15211 777 aa13.25□□□□□ -0.29
NPHP3-211ENST00000515289 DNAJC5Q9H3Z4 198 aa13.25□□□□□ -0.29
NPHP3-211ENST00000515289 ARXQ96QS3 562 aa13.22□□□□□ -0.29
NPHP3-211ENST00000515289 ERICH6Q7L0X2 663 aa13.21□□□□□ -0.29
NPHP3-211ENST00000515289 DAXXQ9UER7 740 aaPredicted RBP13.19□□□□□ -0.3
NPHP3-211ENST00000515289 GTF3C3Q9Y5Q9 886 aa13.19□□□□□ -0.3
NPHP3-211ENST00000515289 STAG3Q9UJ98 1225 aa13.12□□□□□ -0.31
NPHP3-211ENST00000515289 POLA2Q14181 598 aa13.11□□□□□ -0.31
NPHP3-211ENST00000515289 CHGAP10645 457 aaKnown RBP13.1□□□□□ -0.31
NPHP3-211ENST00000515289 PLCD3Q8N3E9 789 aa13.04□□□□□ -0.32
NPHP3-211ENST00000515289 TRHP20396 242 aaPredicted RBP13.03□□□□□ -0.32
NPHP3-211ENST00000515289 ZBTB12Q9Y330 459 aaPredicted RBP13.03□□□□□ -0.32
NPHP3-211ENST00000515289 NISCHQ9Y2I1 1504 aa13.03□□□□□ -0.32
NPHP3-211ENST00000515289 TMEM132AQ24JP5 1023 aa12.99□□□□□ -0.33
NPHP3-211ENST00000515289 HS6ST3Q8IZP7 471 aa12.99□□□□□ -0.33
NPHP3-211ENST00000515289 TRIM41Q8WV44 630 aa12.95□□□□□ -0.34
NPHP3-211ENST00000515289 SPINK5Q9NQ38 1064 aaPredicted RBP12.94□□□□□ -0.34
NPHP3-211ENST00000515289 CIZ1Q9ULV3 898 aaPredicted RBP12.93□□□□□ -0.34
NPHP3-211ENST00000515289 MIER1Q8N108 512 aa12.92□□□□□ -0.34
NPHP3-211ENST00000515289 HOMEZQ8IX15 550 aa12.89□□□□□ -0.35
NPHP3-211ENST00000515289 ZBTB47Q9UFB7 747 aaPredicted RBP12.87□□□□□ -0.35
NPHP3-211ENST00000515289 ZNF692Q9BU19 519 aaPredicted RBP12.85□□□□□ -0.35
NPHP3-211ENST00000515289 CAPN15O75808 1086 aa12.83□□□□□ -0.36
NPHP3-211ENST00000515289 C14orf37Q86TY3 774 aa12.81□□□□□ -0.36
NPHP3-211ENST00000515289 SSUH2Q9Y2M2 353 aa12.8□□□□□ -0.36
NPHP3-211ENST00000515289 PLEKHG5O94827 1062 aa12.79□□□□□ -0.36
NPHP3-211ENST00000515289 NKX1-1Q15270 411 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms