RNA–Protein interactions for RNA: ENST00000505905.1

LIN54-205, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 2

Gene LIN54, Length 810 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-205ENST00000505905 AEBP2Q6ZN18 517 aaPredicted RBP37.6■■■■□ 3.61
LIN54-205ENST00000505905 CHIC1Q5VXU3 224 aa35.76■■■■□ 3.32
LIN54-205ENST00000505905 SENP3Q9H4L4 574 aaPredicted RBP31.94■■■□□ 2.7
LIN54-205ENST00000505905 PHF23Q9BUL5 403 aaPredicted RBP31.57■■■□□ 2.64
LIN54-205ENST00000505905 FOXD1Q16676 465 aa29.82■■■□□ 2.36
LIN54-205ENST00000505905 PLPPR3Q6T4P5 718 aa28.55■■■□□ 2.16
LIN54-205ENST00000505905 PPP6R1Q9UPN7 881 aa28.01■■■□□ 2.07
LIN54-205ENST00000505905 ADRA2BP18089 450 aa27.88■■■□□ 2.05
LIN54-205ENST00000505905 PIAS4Q8N2W9 510 aaPredicted RBP27.82■■■□□ 2.04
LIN54-205ENST00000505905 MSH5O43196 834 aa27.77■■■□□ 2.04
LIN54-205ENST00000505905 POTEDQ86YR6 584 aa26.99■■□□□ 1.91
LIN54-205ENST00000505905 MAPK8IP2Q13387 824 aaPredicted RBP25.59■■□□□ 1.69
LIN54-205ENST00000505905 DMRT2Q9Y5R5 561 aa25.39■■□□□ 1.66
LIN54-205ENST00000505905 SCAF1Q9H7N4 1312 aaKnown RBP25.38■■□□□ 1.65
LIN54-205ENST00000505905 PPP4R3CPQ6ZMV5 832 aa25.07■■□□□ 1.6
LIN54-205ENST00000505905 CNKSR2Q8WXI2 1034 aa24.55■■□□□ 1.52
LIN54-205ENST00000505905 HOXD11P31277 338 aaPredicted RBP24.52■■□□□ 1.52
LIN54-205ENST00000505905 RNF216Q9NWF9 866 aaPredicted RBP24.32■■□□□ 1.48
LIN54-205ENST00000505905 DCAF8L1A6NGE4 600 aa24.2■■□□□ 1.46
LIN54-205ENST00000505905 NCBP3Q53F19 620 aaKnown RBP24.06■■□□□ 1.44
LIN54-205ENST00000505905 NPM3O75607 178 aaKnown RBP23.82■■□□□ 1.4
LIN54-205ENST00000505905 RNF39Q9H2S5 420 aa23.79■■□□□ 1.4
LIN54-205ENST00000505905 CACNB1Q02641 598 aaPredicted RBP23.74■■□□□ 1.39
LIN54-205ENST00000505905 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
LIN54-205ENST00000505905 KCNA4P22459 653 aa23.48■■□□□ 1.35
LIN54-205ENST00000505905 C1QBPQ07021 282 aaKnown RBP23.39■■□□□ 1.33
LIN54-205ENST00000505905 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.25■■□□□ 1.31
LIN54-205ENST00000505905 U3KPZ7 1027 aaPredicted RBP22.88■■□□□ 1.25
LIN54-205ENST00000505905 SLC4A2P04920 1241 aa22.78■■□□□ 1.24
LIN54-205ENST00000505905 SPINK5Q9NQ38 1064 aaPredicted RBP22.5■■□□□ 1.19
LIN54-205ENST00000505905 CAPN15O75808 1086 aa22.36■■□□□ 1.17
LIN54-205ENST00000505905 DSG3P32926 999 aa22.3■■□□□ 1.16
LIN54-205ENST00000505905 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.14■■□□□ 1.13
LIN54-205ENST00000505905 HNRNPUL2Q1KMD3 747 aaKnown RBP22.14■■□□□ 1.13
LIN54-205ENST00000505905 SLC4A1APQ9BWU0 796 aaKnown RBP22.13■■□□□ 1.13
LIN54-205ENST00000505905 APLP2Q06481 763 aa22.08■■□□□ 1.13
LIN54-205ENST00000505905 SAMD1Q6SPF0 538 aaPredicted RBP22.06■■□□□ 1.12
LIN54-205ENST00000505905 TRHP20396 242 aaPredicted RBP22.03■■□□□ 1.12
LIN54-205ENST00000505905 ZNF219Q9P2Y4 722 aaPredicted RBP22■■□□□ 1.11
LIN54-205ENST00000505905 MYCNP04198 464 aaPredicted RBP21.97■■□□□ 1.11
LIN54-205ENST00000505905 ABCB7O75027 752 aa21.9■■□□□ 1.1
LIN54-205ENST00000505905 FOXD4L1Q9NU39 408 aa21.82■■□□□ 1.08
LIN54-205ENST00000505905 ZBTB22O15209 634 aa21.66■■□□□ 1.06
LIN54-205ENST00000505905 ATF5Q9Y2D1 282 aaPredicted RBP21.56■■□□□ 1.04
LIN54-205ENST00000505905 POLA2Q14181 598 aa21.51■■□□□ 1.03
LIN54-205ENST00000505905 RBM42Q9BTD8 480 aaKnown RBP21.18■□□□□ 0.98
LIN54-205ENST00000505905 ATXN8OSP0DMR3 200 aa21.14■□□□□ 0.97
LIN54-205ENST00000505905 POTEHQ6S545 545 aa21.13■□□□□ 0.97
LIN54-205ENST00000505905 ZBTB12Q9Y330 459 aaPredicted RBP21.03■□□□□ 0.96
LIN54-205ENST00000505905 OSCARQ8IYS5 282 aa20.85■□□□□ 0.93
LIN54-205ENST00000505905 AKT1S1Q96B36 256 aa20.76■□□□□ 0.91
LIN54-205ENST00000505905 CHRDL2Q6WN34 429 aa20.73■□□□□ 0.91
LIN54-205ENST00000505905 CSRNP3Q8WYN3 585 aa20.71■□□□□ 0.91
LIN54-205ENST00000505905 REM2Q8IYK8 340 aaPredicted RBP20.6■□□□□ 0.89
LIN54-205ENST00000505905 MKRN4PQ13434 485 aaPredicted RBP20.59■□□□□ 0.89
LIN54-205ENST00000505905 FBLN2P98095 1184 aa20.55■□□□□ 0.88
LIN54-205ENST00000505905 SPDYE2BA6NHP3 402 aa20.44■□□□□ 0.86
LIN54-205ENST00000505905 SPDYE6P0CI01 402 aa20.44■□□□□ 0.86
LIN54-205ENST00000505905 SPDYE2Q495Y8 402 aa20.44■□□□□ 0.86
LIN54-205ENST00000505905 EHMT2Q96KQ7 1210 aa20.42■□□□□ 0.86
LIN54-205ENST00000505905 PITPNM1O00562 1244 aa20.39■□□□□ 0.85
LIN54-205ENST00000505905 PIP4P2Q8N4L2 257 aa20.29■□□□□ 0.84
LIN54-205ENST00000505905 SSUH2Q9Y2M2 353 aa20.26■□□□□ 0.83
LIN54-205ENST00000505905 FXR2P51116 673 aaKnown RBP eCLIP20.2■□□□□ 0.82
LIN54-205ENST00000505905 ZNF692Q9BU19 519 aaPredicted RBP20.18■□□□□ 0.82
LIN54-205ENST00000505905 SPDYE1Q8NFV5 336 aaPredicted RBP20.03■□□□□ 0.8
LIN54-205ENST00000505905 CLEC11AQ9Y240 323 aa19.95■□□□□ 0.78
LIN54-205ENST00000505905 PABPN1Q86U42 306 aaKnown RBP eCLIP19.92■□□□□ 0.78
LIN54-205ENST00000505905 SP7Q8TDD2 431 aaPredicted RBP19.87■□□□□ 0.77
LIN54-205ENST00000505905 PRKAR2AP13861 404 aaKnown RBP19.81■□□□□ 0.76
LIN54-205ENST00000505905 HAX1O00165 279 aa19.8■□□□□ 0.76
LIN54-205ENST00000505905 EVX2Q03828 476 aa19.71■□□□□ 0.75
LIN54-205ENST00000505905 PRR29P0C7W0 189 aa19.65■□□□□ 0.74
LIN54-205ENST00000505905 CHADLQ6NUI6 762 aa19.63■□□□□ 0.73
LIN54-205ENST00000505905 SPDYE4A6NLX3 237 aa19.56■□□□□ 0.72
LIN54-205ENST00000505905 C19orf67A6NJJ6 358 aa19.55■□□□□ 0.72
LIN54-205ENST00000505905 FARP1Q9Y4F1 1045 aaPredicted RBP19.36■□□□□ 0.69
LIN54-205ENST00000505905 STAG3Q9UJ98 1225 aa19.34■□□□□ 0.69
LIN54-205ENST00000505905 CREBZFQ9NS37 354 aa19.3■□□□□ 0.68
LIN54-205ENST00000505905 PROM2Q8N271 834 aa19.24■□□□□ 0.67
LIN54-205ENST00000505905 GABBR2O75899 941 aa19.2■□□□□ 0.66
LIN54-205ENST00000505905 CD44P16070 742 aaKnown RBP19.19■□□□□ 0.66
LIN54-205ENST00000505905 MNX1P50219 401 aaPredicted RBP19.03■□□□□ 0.64
LIN54-205ENST00000505905 ZNF579Q8NAF0 562 aaKnown RBP18.95■□□□□ 0.62
LIN54-205ENST00000505905 ZRANB1Q9UGI0 708 aa18.92■□□□□ 0.62
LIN54-205ENST00000505905 POTEIP0CG38 1075 aa18.87■□□□□ 0.61
LIN54-205ENST00000505905 CLCN6P51797 869 aa18.87■□□□□ 0.61
LIN54-205ENST00000505905 NPM1P06748 294 aaKnown RBP eCLIP18.82■□□□□ 0.6
LIN54-205ENST00000505905 PHF12Q96QT6 1004 aa18.73■□□□□ 0.59
LIN54-205ENST00000505905 GALR2O43603 387 aaPredicted RBP18.71■□□□□ 0.59
LIN54-205ENST00000505905 PAK3O75914 559 aaPredicted RBP18.71■□□□□ 0.59
LIN54-205ENST00000505905 FKBP8Q14318 412 aa18.7■□□□□ 0.58
LIN54-205ENST00000505905 LHX8Q68G74 356 aa18.62■□□□□ 0.57
LIN54-205ENST00000505905 DCBLD2Q96PD2 775 aa18.62■□□□□ 0.57
LIN54-205ENST00000505905 MIER1Q8N108 512 aa18.6■□□□□ 0.57
LIN54-205ENST00000505905 TSPYL2Q9H2G4 693 aaPredicted RBP18.52■□□□□ 0.56
LIN54-205ENST00000505905 CCDC61Q9Y6R9 512 aa18.52■□□□□ 0.56
LIN54-205ENST00000505905 PLEKHG5O94827 1062 aa18.48■□□□□ 0.55
LIN54-205ENST00000505905 MS4A3Q96HJ5 214 aa18.48■□□□□ 0.55
LIN54-205ENST00000505905 RASEFQ8IZ41 740 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms