RNA–Protein interactions for RNA: ENST00000476664.1

LRCH3-215, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 227 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-215ENST00000476664 CHIC1Q5VXU3 224 aa20.03■□□□□ 0.8
LRCH3-215ENST00000476664 AEBP2Q6ZN18 517 aaPredicted RBP19.18■□□□□ 0.66
LRCH3-215ENST00000476664 PHF23Q9BUL5 403 aaPredicted RBP17.67■□□□□ 0.42
LRCH3-215ENST00000476664 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
LRCH3-215ENST00000476664 EHMT2Q96KQ7 1210 aa16.46■□□□□ 0.23
LRCH3-215ENST00000476664 SENP3Q9H4L4 574 aaPredicted RBP16.2■□□□□ 0.18
LRCH3-215ENST00000476664 KCNA4P22459 653 aa15.99■□□□□ 0.15
LRCH3-215ENST00000476664 CSRNP3Q8WYN3 585 aa15.67■□□□□ 0.1
LRCH3-215ENST00000476664 SLC24A1O60721 1099 aa15.66■□□□□ 0.1
LRCH3-215ENST00000476664 ADRA2BP18089 450 aa15.62■□□□□ 0.09
LRCH3-215ENST00000476664 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
LRCH3-215ENST00000476664 PPP6R1Q9UPN7 881 aa15.17■□□□□ 0.02
LRCH3-215ENST00000476664 AMER1Q5JTC6 1135 aaPredicted RBP15.12■□□□□ 0.01
LRCH3-215ENST00000476664 NCBP3Q53F19 620 aaKnown RBP15.02■□□□□ -0
LRCH3-215ENST00000476664 RTN4Q9NQC3 1192 aaKnown RBP15.02■□□□□ -0
LRCH3-215ENST00000476664 PPP4R3CPQ6ZMV5 832 aa14.97□□□□□ -0.01
LRCH3-215ENST00000476664 FOXD1Q16676 465 aa14.81□□□□□ -0.04
LRCH3-215ENST00000476664 ZBTB22O15209 634 aa14.7□□□□□ -0.06
LRCH3-215ENST00000476664 NPM3O75607 178 aaKnown RBP14.7□□□□□ -0.06
LRCH3-215ENST00000476664 FOXD4L1Q9NU39 408 aa14.43□□□□□ -0.1
LRCH3-215ENST00000476664 PIAS4Q8N2W9 510 aaPredicted RBP14.32□□□□□ -0.12
LRCH3-215ENST00000476664 CNKSR2Q8WXI2 1034 aa14.32□□□□□ -0.12
LRCH3-215ENST00000476664 DNAJC5BQ9UF47 199 aa14.15□□□□□ -0.14
LRCH3-215ENST00000476664 FKBP8Q14318 412 aa14.13□□□□□ -0.15
LRCH3-215ENST00000476664 SCAF1Q9H7N4 1312 aaKnown RBP14.1□□□□□ -0.15
LRCH3-215ENST00000476664 ABCC9O60706 1549 aa13.85□□□□□ -0.19
LRCH3-215ENST00000476664 ATXN8OSP0DMR3 200 aa13.85□□□□□ -0.19
LRCH3-215ENST00000476664 PLCB2Q00722 1185 aa13.83□□□□□ -0.2
LRCH3-215ENST00000476664 BCANQ96GW7 911 aa13.8□□□□□ -0.2
LRCH3-215ENST00000476664 NISCHQ9Y2I1 1504 aa13.8□□□□□ -0.2
LRCH3-215ENST00000476664 RNF216Q9NWF9 866 aaPredicted RBP13.72□□□□□ -0.21
LRCH3-215ENST00000476664 HAP1P54257 671 aaPredicted RBP13.65□□□□□ -0.22
LRCH3-215ENST00000476664 PRKCSHP14314 528 aaPredicted RBP13.64□□□□□ -0.23
LRCH3-215ENST00000476664 TAOK2Q9UL54 1235 aa13.64□□□□□ -0.23
LRCH3-215ENST00000476664 MYCNP04198 464 aaPredicted RBP13.62□□□□□ -0.23
LRCH3-215ENST00000476664 SLC4A2P04920 1241 aa13.54□□□□□ -0.24
LRCH3-215ENST00000476664 DNAJC5Q9H3Z4 198 aa13.53□□□□□ -0.24
LRCH3-215ENST00000476664 VSIG10Q8N0Z9 540 aa13.5□□□□□ -0.25
LRCH3-215ENST00000476664 MAPK8IP2Q13387 824 aaPredicted RBP13.45□□□□□ -0.26
LRCH3-215ENST00000476664 TPRNQ4KMQ1 711 aa13.39□□□□□ -0.27
LRCH3-215ENST00000476664 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
LRCH3-215ENST00000476664 DCAF8L2P0C7V8 631 aa13.35□□□□□ -0.27
LRCH3-215ENST00000476664 HOXD11P31277 338 aaPredicted RBP13.32□□□□□ -0.28
LRCH3-215ENST00000476664 MSH5O43196 834 aa13.27□□□□□ -0.29
LRCH3-215ENST00000476664 DAXXQ9UER7 740 aaPredicted RBP13.27□□□□□ -0.29
LRCH3-215ENST00000476664 ARXQ96QS3 562 aa13.16□□□□□ -0.3
LRCH3-215ENST00000476664 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.14□□□□□ -0.31
LRCH3-215ENST00000476664 ERICH6Q7L0X2 663 aa13.1□□□□□ -0.31
LRCH3-215ENST00000476664 DMRT2Q9Y5R5 561 aa13.1□□□□□ -0.31
LRCH3-215ENST00000476664 VASPP50552 380 aaPredicted RBP13.09□□□□□ -0.31
LRCH3-215ENST00000476664 TIMELESSQ9UNS1 1208 aa13.09□□□□□ -0.31
LRCH3-215ENST00000476664 KDM2AQ9Y2K7 1162 aa13.09□□□□□ -0.31
LRCH3-215ENST00000476664 BBXQ8WY36 941 aaPredicted RBP13.05□□□□□ -0.32
LRCH3-215ENST00000476664 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
LRCH3-215ENST00000476664 TULP1O00294 542 aaPredicted RBP13.03□□□□□ -0.32
LRCH3-215ENST00000476664 FBLN2P98095 1184 aa13□□□□□ -0.33
LRCH3-215ENST00000476664 PKD2Q13563 968 aa13□□□□□ -0.33
LRCH3-215ENST00000476664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
LRCH3-215ENST00000476664 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
LRCH3-215ENST00000476664 SAMD1Q6SPF0 538 aaPredicted RBP12.98□□□□□ -0.33
LRCH3-215ENST00000476664 PAXIP1Q6ZW49 1069 aaPredicted RBP12.97□□□□□ -0.33
LRCH3-215ENST00000476664 IFNLR1Q8IU57 520 aaPredicted RBP12.96□□□□□ -0.33
LRCH3-215ENST00000476664 SPDYE4A6NLX3 237 aa12.95□□□□□ -0.34
LRCH3-215ENST00000476664 GTF3C3Q9Y5Q9 886 aa12.95□□□□□ -0.34
LRCH3-215ENST00000476664 CFAP44Q96MT7 982 aa12.93□□□□□ -0.34
LRCH3-215ENST00000476664 PROM2Q8N271 834 aa12.89□□□□□ -0.35
LRCH3-215ENST00000476664 NBR1Q14596 966 aa12.85□□□□□ -0.35
LRCH3-215ENST00000476664 CCDC180Q9P1Z9 1646 aa12.84□□□□□ -0.35
LRCH3-215ENST00000476664 HOMEZQ8IX15 550 aa12.83□□□□□ -0.36
LRCH3-215ENST00000476664 SPRYD3Q8NCJ5 442 aa12.81□□□□□ -0.36
LRCH3-215ENST00000476664 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.37
LRCH3-215ENST00000476664 ECM2O94769 699 aaPredicted RBP12.76□□□□□ -0.37
LRCH3-215ENST00000476664 ZNF219Q9P2Y4 722 aaPredicted RBP12.76□□□□□ -0.37
LRCH3-215ENST00000476664 TSHZ2Q9NRE2 1034 aa12.75□□□□□ -0.37
LRCH3-215ENST00000476664 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
LRCH3-215ENST00000476664 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.72□□□□□ -0.37
LRCH3-215ENST00000476664 RB1CC1Q8TDY2 1594 aa12.71□□□□□ -0.37
LRCH3-215ENST00000476664 TMEM132AQ24JP5 1023 aa12.67□□□□□ -0.38
LRCH3-215ENST00000476664 SPOCK2Q92563 424 aa12.67□□□□□ -0.38
LRCH3-215ENST00000476664 KLHL34Q8N239 644 aa12.61□□□□□ -0.39
LRCH3-215ENST00000476664 C14orf37Q86TY3 774 aa12.6□□□□□ -0.39
LRCH3-215ENST00000476664 U3KPZ7 1027 aaPredicted RBP12.6□□□□□ -0.39
LRCH3-215ENST00000476664 APLP2Q06481 763 aa12.59□□□□□ -0.39
LRCH3-215ENST00000476664 CECR2Q9BXF3 1484 aa12.57□□□□□ -0.4
LRCH3-215ENST00000476664 MKRN4PQ13434 485 aaPredicted RBP12.56□□□□□ -0.4
LRCH3-215ENST00000476664 RGL2O15211 777 aa12.54□□□□□ -0.4
LRCH3-215ENST00000476664 TRIM41Q8WV44 630 aa12.52□□□□□ -0.41
LRCH3-215ENST00000476664 UNC13AQ9UPW8 1703 aa12.5□□□□□ -0.41
LRCH3-215ENST00000476664 DCAF8L1A6NGE4 600 aa12.48□□□□□ -0.41
LRCH3-215ENST00000476664 CC2D2AQ9P2K1 1620 aa12.48□□□□□ -0.41
LRCH3-215ENST00000476664 CHGAP10645 457 aaKnown RBP12.47□□□□□ -0.41
LRCH3-215ENST00000476664 BICRAQ9NZM4 1560 aa12.42□□□□□ -0.42
LRCH3-215ENST00000476664 RANGAP1P46060 587 aaPredicted RBP12.4□□□□□ -0.42
LRCH3-215ENST00000476664 NACADO15069 1562 aa12.36□□□□□ -0.43
LRCH3-215ENST00000476664 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
LRCH3-215ENST00000476664 CUX2O14529 1486 aa12.34□□□□□ -0.43
LRCH3-215ENST00000476664 HS6ST3Q8IZP7 471 aa12.31□□□□□ -0.44
LRCH3-215ENST00000476664 PLCD3Q8N3E9 789 aa12.31□□□□□ -0.44
LRCH3-215ENST00000476664 PODXL2Q9NZ53 605 aa12.24□□□□□ -0.45
LRCH3-215ENST00000476664 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms