RNA–Protein interactions for RNA: ENST00000413333.1

HMGB3P31-201, Transcript of high mobility group box 3 pseudogene 31, humanhuman

BASIC

Gene HMGB3P31, Length 595 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P31-201ENST00000413333 CHIC1Q5VXU3 224 aa19.31■□□□□ 0.68
HMGB3P31-201ENST00000413333 AEBP2Q6ZN18 517 aaPredicted RBP19.24■□□□□ 0.67
HMGB3P31-201ENST00000413333 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
HMGB3P31-201ENST00000413333 SENP3Q9H4L4 574 aaPredicted RBP16.22■□□□□ 0.19
HMGB3P31-201ENST00000413333 PLPPR3Q6T4P5 718 aa15.92■□□□□ 0.14
HMGB3P31-201ENST00000413333 FOXD1Q16676 465 aa15.01□□□□□ -0.01
HMGB3P31-201ENST00000413333 ADRA2BP18089 450 aa14.95□□□□□ -0.02
HMGB3P31-201ENST00000413333 PPP6R1Q9UPN7 881 aa14.89□□□□□ -0.03
HMGB3P31-201ENST00000413333 KCNA4P22459 653 aa14.43□□□□□ -0.1
HMGB3P31-201ENST00000413333 PIAS4Q8N2W9 510 aaPredicted RBP14.31□□□□□ -0.12
HMGB3P31-201ENST00000413333 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
HMGB3P31-201ENST00000413333 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
HMGB3P31-201ENST00000413333 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
HMGB3P31-201ENST00000413333 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
HMGB3P31-201ENST00000413333 NPM3O75607 178 aaKnown RBP13.7□□□□□ -0.22
HMGB3P31-201ENST00000413333 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
HMGB3P31-201ENST00000413333 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
HMGB3P31-201ENST00000413333 MSH5O43196 834 aa13.6□□□□□ -0.23
HMGB3P31-201ENST00000413333 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
HMGB3P31-201ENST00000413333 POTEDQ86YR6 584 aa13.53□□□□□ -0.24
HMGB3P31-201ENST00000413333 MAPK8IP2Q13387 824 aaPredicted RBP13.4□□□□□ -0.26
HMGB3P31-201ENST00000413333 ZBTB22O15209 634 aa13.27□□□□□ -0.29
HMGB3P31-201ENST00000413333 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
HMGB3P31-201ENST00000413333 FOXD4L1Q9NU39 408 aa13.1□□□□□ -0.31
HMGB3P31-201ENST00000413333 DNAJC5BQ9UF47 199 aa13.08□□□□□ -0.32
HMGB3P31-201ENST00000413333 DMRT2Q9Y5R5 561 aa13.03□□□□□ -0.32
HMGB3P31-201ENST00000413333 HOXD11P31277 338 aaPredicted RBP12.96□□□□□ -0.33
HMGB3P31-201ENST00000413333 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
HMGB3P31-201ENST00000413333 MYCNP04198 464 aaPredicted RBP12.64□□□□□ -0.39
HMGB3P31-201ENST00000413333 DCAF8L1A6NGE4 600 aa12.56□□□□□ -0.4
HMGB3P31-201ENST00000413333 ATXN8OSP0DMR3 200 aa12.54□□□□□ -0.4
HMGB3P31-201ENST00000413333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.43□□□□□ -0.42
HMGB3P31-201ENST00000413333 FKBP8Q14318 412 aa12.35□□□□□ -0.43
HMGB3P31-201ENST00000413333 ATF5Q9Y2D1 282 aaPredicted RBP12.3□□□□□ -0.44
HMGB3P31-201ENST00000413333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 HNRNPUL2Q1KMD3 747 aaKnown RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 SAMD1Q6SPF0 538 aaPredicted RBP12.24□□□□□ -0.45
HMGB3P31-201ENST00000413333 RTN4Q9NQC3 1192 aaKnown RBP12.19□□□□□ -0.46
HMGB3P31-201ENST00000413333 AMER1Q5JTC6 1135 aaPredicted RBP12.16□□□□□ -0.46
HMGB3P31-201ENST00000413333 ZNF219Q9P2Y4 722 aaPredicted RBP12.02□□□□□ -0.49
HMGB3P31-201ENST00000413333 APLP2Q06481 763 aa12□□□□□ -0.49
HMGB3P31-201ENST00000413333 SLC24A1O60721 1099 aa11.89□□□□□ -0.51
HMGB3P31-201ENST00000413333 TRHP20396 242 aaPredicted RBP11.83□□□□□ -0.52
HMGB3P31-201ENST00000413333 SPDYE4A6NLX3 237 aa11.79□□□□□ -0.52
HMGB3P31-201ENST00000413333 SPINK5Q9NQ38 1064 aaPredicted RBP11.79□□□□□ -0.52
HMGB3P31-201ENST00000413333 MKRN4PQ13434 485 aaPredicted RBP11.76□□□□□ -0.53
HMGB3P31-201ENST00000413333 CAPN15O75808 1086 aa11.73□□□□□ -0.53
HMGB3P31-201ENST00000413333 FBLN2P98095 1184 aa11.73□□□□□ -0.53
HMGB3P31-201ENST00000413333 POLA2Q14181 598 aa11.72□□□□□ -0.53
HMGB3P31-201ENST00000413333 RNF39Q9H2S5 420 aa11.7□□□□□ -0.54
HMGB3P31-201ENST00000413333 FBXO3Q9UK99 471 aa11.7□□□□□ -0.54
HMGB3P31-201ENST00000413333 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
HMGB3P31-201ENST00000413333 C1QBPQ07021 282 aaKnown RBP11.59□□□□□ -0.55
HMGB3P31-201ENST00000413333 ABCB7O75027 752 aa11.57□□□□□ -0.56
HMGB3P31-201ENST00000413333 PROM2Q8N271 834 aa11.57□□□□□ -0.56
HMGB3P31-201ENST00000413333 VASPP50552 380 aaPredicted RBP11.54□□□□□ -0.56
HMGB3P31-201ENST00000413333 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P31-201ENST00000413333 IFNLR1Q8IU57 520 aaPredicted RBP11.44□□□□□ -0.58
HMGB3P31-201ENST00000413333 DCAF8L2P0C7V8 631 aa11.36□□□□□ -0.59
HMGB3P31-201ENST00000413333 DSG3P32926 999 aa11.35□□□□□ -0.59
HMGB3P31-201ENST00000413333 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
HMGB3P31-201ENST00000413333 OSCARQ8IYS5 282 aa11.29□□□□□ -0.6
HMGB3P31-201ENST00000413333 KLHL34Q8N239 644 aa11.29□□□□□ -0.6
HMGB3P31-201ENST00000413333 SPDYE2BA6NHP3 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPDYE6P0CI01 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 PKD2Q13563 968 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPDYE2Q495Y8 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 PLCB2Q00722 1185 aa11.24□□□□□ -0.61
HMGB3P31-201ENST00000413333 PABPN1Q86U42 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPOCK2Q92563 424 aa11.21□□□□□ -0.61
HMGB3P31-201ENST00000413333 STAG3Q9UJ98 1225 aa11.21□□□□□ -0.61
HMGB3P31-201ENST00000413333 PLCD3Q8N3E9 789 aa11.2□□□□□ -0.62
HMGB3P31-201ENST00000413333 SSUH2Q9Y2M2 353 aa11.2□□□□□ -0.62
HMGB3P31-201ENST00000413333 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
HMGB3P31-201ENST00000413333 MIER1Q8N108 512 aa11.15□□□□□ -0.62
HMGB3P31-201ENST00000413333 ECM2O94769 699 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P31-201ENST00000413333 PLEKHG5O94827 1062 aa11.04□□□□□ -0.64
HMGB3P31-201ENST00000413333 ZBTB4Q9P1Z0 1013 aaPredicted RBP11□□□□□ -0.65
HMGB3P31-201ENST00000413333 CIZ1Q9ULV3 898 aaPredicted RBP11□□□□□ -0.65
HMGB3P31-201ENST00000413333 RGL2O15211 777 aa10.99□□□□□ -0.65
HMGB3P31-201ENST00000413333 BBXQ8WY36 941 aaPredicted RBP10.98□□□□□ -0.65
HMGB3P31-201ENST00000413333 NPM1P06748 294 aaKnown RBP eCLIP10.97□□□□□ -0.65
HMGB3P31-201ENST00000413333 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
HMGB3P31-201ENST00000413333 PAXIP1Q6ZW49 1069 aaPredicted RBP10.94□□□□□ -0.66
HMGB3P31-201ENST00000413333 CFAP44Q96MT7 982 aa10.94□□□□□ -0.66
HMGB3P31-201ENST00000413333 VSIG10Q8N0Z9 540 aa10.91□□□□□ -0.66
HMGB3P31-201ENST00000413333 CHGAP10645 457 aaKnown RBP10.86□□□□□ -0.67
HMGB3P31-201ENST00000413333 SPRYD3Q8NCJ5 442 aa10.83□□□□□ -0.68
HMGB3P31-201ENST00000413333 BCANQ96GW7 911 aa10.83□□□□□ -0.68
HMGB3P31-201ENST00000413333 TRIM41Q8WV44 630 aa10.81□□□□□ -0.68
HMGB3P31-201ENST00000413333 CLEC11AQ9Y240 323 aa10.81□□□□□ -0.68
HMGB3P31-201ENST00000413333 SPDYE1Q8NFV5 336 aaPredicted RBP10.8□□□□□ -0.68
HMGB3P31-201ENST00000413333 GSE1Q14687 1217 aa10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 RBM42Q9BTD8 480 aaKnown RBP10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 KDM2AQ9Y2K7 1162 aa10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 DCAF8Q5TAQ9 597 aa10.78□□□□□ -0.68
HMGB3P31-201ENST00000413333 AKT1S1Q96B36 256 aa10.77□□□□□ -0.69
HMGB3P31-201ENST00000413333 PRR29P0C7W0 189 aa10.75□□□□□ -0.69
HMGB3P31-201ENST00000413333 NUBP1P53384 320 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms