RNA–Protein interactions for RNA: ENST00000413296.1

CBX1P3-201, Transcript of chromobox 1 pseudogene 3, humanhuman

BASIC

Gene CBX1P3, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P3-201ENST00000413296 CHIC1Q5VXU3 224 aa14.59□□□□□ -0.07
CBX1P3-201ENST00000413296 AEBP2Q6ZN18 517 aaPredicted RBP14.54□□□□□ -0.08
CBX1P3-201ENST00000413296 SLC24A1O60721 1099 aa13.09□□□□□ -0.31
CBX1P3-201ENST00000413296 PHF23Q9BUL5 403 aaPredicted RBP12.97□□□□□ -0.33
CBX1P3-201ENST00000413296 EHMT2Q96KQ7 1210 aa12.92□□□□□ -0.34
CBX1P3-201ENST00000413296 PLPPR3Q6T4P5 718 aa12.39□□□□□ -0.43
CBX1P3-201ENST00000413296 KCNA4P22459 653 aa12.21□□□□□ -0.45
CBX1P3-201ENST00000413296 CSRNP3Q8WYN3 585 aa12.18□□□□□ -0.46
CBX1P3-201ENST00000413296 SENP3Q9H4L4 574 aaPredicted RBP12.16□□□□□ -0.46
CBX1P3-201ENST00000413296 RTN4Q9NQC3 1192 aaKnown RBP12.14□□□□□ -0.47
CBX1P3-201ENST00000413296 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
CBX1P3-201ENST00000413296 SLC4A1APQ9BWU0 796 aaKnown RBP11.84□□□□□ -0.51
CBX1P3-201ENST00000413296 NCBP3Q53F19 620 aaKnown RBP11.76□□□□□ -0.53
CBX1P3-201ENST00000413296 ADRA2BP18089 450 aa11.57□□□□□ -0.56
CBX1P3-201ENST00000413296 DAXXQ9UER7 740 aaPredicted RBP11.5□□□□□ -0.57
CBX1P3-201ENST00000413296 PRKCSHP14314 528 aaPredicted RBP11.32□□□□□ -0.6
CBX1P3-201ENST00000413296 FOXD1Q16676 465 aa11.32□□□□□ -0.6
CBX1P3-201ENST00000413296 ZBTB22O15209 634 aa11.25□□□□□ -0.61
CBX1P3-201ENST00000413296 PPP6R1Q9UPN7 881 aa11.22□□□□□ -0.61
CBX1P3-201ENST00000413296 BCANQ96GW7 911 aa11.19□□□□□ -0.62
CBX1P3-201ENST00000413296 TAOK2Q9UL54 1235 aa11.17□□□□□ -0.62
CBX1P3-201ENST00000413296 ARXQ96QS3 562 aa11.14□□□□□ -0.63
CBX1P3-201ENST00000413296 PLCB2Q00722 1185 aa11.08□□□□□ -0.64
CBX1P3-201ENST00000413296 PPP4R3CPQ6ZMV5 832 aa11.08□□□□□ -0.64
CBX1P3-201ENST00000413296 TIMELESSQ9UNS1 1208 aa10.99□□□□□ -0.65
CBX1P3-201ENST00000413296 NPM3O75607 178 aaKnown RBP10.98□□□□□ -0.65
CBX1P3-201ENST00000413296 TPRNQ4KMQ1 711 aa10.98□□□□□ -0.65
CBX1P3-201ENST00000413296 HAP1P54257 671 aaPredicted RBP10.97□□□□□ -0.65
CBX1P3-201ENST00000413296 FKBP8Q14318 412 aa10.96□□□□□ -0.65
CBX1P3-201ENST00000413296 TULP1O00294 542 aaPredicted RBP10.89□□□□□ -0.67
CBX1P3-201ENST00000413296 FOXD4L1Q9NU39 408 aa10.88□□□□□ -0.67
CBX1P3-201ENST00000413296 HOMEZQ8IX15 550 aa10.82□□□□□ -0.68
CBX1P3-201ENST00000413296 VSIG10Q8N0Z9 540 aa10.8□□□□□ -0.68
CBX1P3-201ENST00000413296 ERICH6Q7L0X2 663 aa10.77□□□□□ -0.69
CBX1P3-201ENST00000413296 GTF3C3Q9Y5Q9 886 aa10.72□□□□□ -0.69
CBX1P3-201ENST00000413296 RANGAP1P46060 587 aaPredicted RBP10.67□□□□□ -0.7
CBX1P3-201ENST00000413296 PIAS4Q8N2W9 510 aaPredicted RBP10.66□□□□□ -0.7
CBX1P3-201ENST00000413296 DCAF8L2P0C7V8 631 aa10.52□□□□□ -0.73
CBX1P3-201ENST00000413296 KDM2AQ9Y2K7 1162 aa10.52□□□□□ -0.73
CBX1P3-201ENST00000413296 CNKSR2Q8WXI2 1034 aa10.49□□□□□ -0.73
CBX1P3-201ENST00000413296 TMEM132AQ24JP5 1023 aa10.47□□□□□ -0.73
CBX1P3-201ENST00000413296 PODXL2Q9NZ53 605 aa10.43□□□□□ -0.74
CBX1P3-201ENST00000413296 DNAJC5BQ9UF47 199 aa10.43□□□□□ -0.74
CBX1P3-201ENST00000413296 FBLN2P98095 1184 aa10.42□□□□□ -0.74
CBX1P3-201ENST00000413296 C14orf37Q86TY3 774 aa10.42□□□□□ -0.74
CBX1P3-201ENST00000413296 ATXN8OSP0DMR3 200 aa10.37□□□□□ -0.75
CBX1P3-201ENST00000413296 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.32□□□□□ -0.76
CBX1P3-201ENST00000413296 NBR1Q14596 966 aa10.25□□□□□ -0.77
CBX1P3-201ENST00000413296 PAXIP1Q6ZW49 1069 aaPredicted RBP10.25□□□□□ -0.77
CBX1P3-201ENST00000413296 APLP2Q06481 763 aa10.24□□□□□ -0.77
CBX1P3-201ENST00000413296 BBXQ8WY36 941 aaPredicted RBP10.24□□□□□ -0.77
CBX1P3-201ENST00000413296 CFAP44Q96MT7 982 aa10.22□□□□□ -0.77
CBX1P3-201ENST00000413296 MSH5O43196 834 aa10.21□□□□□ -0.77
CBX1P3-201ENST00000413296 FBXO3Q9UK99 471 aa10.21□□□□□ -0.77
CBX1P3-201ENST00000413296 PELP1Q8IZL8 1130 aaKnown RBP10.19□□□□□ -0.78
CBX1P3-201ENST00000413296 KLHL34Q8N239 644 aa10.19□□□□□ -0.78
CBX1P3-201ENST00000413296 NPM2Q86SE8 214 aaKnown RBP10.18□□□□□ -0.78
CBX1P3-201ENST00000413296 TTBK1Q5TCY1 1321 aaPredicted RBP10.16□□□□□ -0.78
CBX1P3-201ENST00000413296 SCAF1Q9H7N4 1312 aaKnown RBP10.15□□□□□ -0.78
CBX1P3-201ENST00000413296 PKD2Q13563 968 aa10.13□□□□□ -0.79
CBX1P3-201ENST00000413296 MYCNP04198 464 aaPredicted RBP10.12□□□□□ -0.79
CBX1P3-201ENST00000413296 TSHZ2Q9NRE2 1034 aa10.12□□□□□ -0.79
CBX1P3-201ENST00000413296 SUPT5HO00267 1087 aaKnown RBP10.11□□□□□ -0.79
CBX1P3-201ENST00000413296 MYT1Q01538 1121 aa10.08□□□□□ -0.8
CBX1P3-201ENST00000413296 SLC4A2P04920 1241 aa10.07□□□□□ -0.8
CBX1P3-201ENST00000413296 MAPK8IP2Q13387 824 aaPredicted RBP10.06□□□□□ -0.8
CBX1P3-201ENST00000413296 NPM1P06748 294 aaKnown RBP eCLIP10.05□□□□□ -0.8
CBX1P3-201ENST00000413296 VASPP50552 380 aaPredicted RBP10.05□□□□□ -0.8
CBX1P3-201ENST00000413296 SPRYD3Q8NCJ5 442 aa10.05□□□□□ -0.8
CBX1P3-201ENST00000413296 TRIM26Q12899 539 aaPredicted RBP10.03□□□□□ -0.8
CBX1P3-201ENST00000413296 IFNLR1Q8IU57 520 aaPredicted RBP10□□□□□ -0.81
CBX1P3-201ENST00000413296 DNAJC5Q9H3Z4 198 aa9.99□□□□□ -0.81
CBX1P3-201ENST00000413296 RNF216Q9NWF9 866 aaPredicted RBP9.98□□□□□ -0.81
CBX1P3-201ENST00000413296 UBTFP17480 764 aaKnown RBP9.96□□□□□ -0.82
CBX1P3-201ENST00000413296 ECM2O94769 699 aaPredicted RBP9.88□□□□□ -0.83
CBX1P3-201ENST00000413296 HRCP23327 699 aa9.88□□□□□ -0.83
CBX1P3-201ENST00000413296 DMRT2Q9Y5R5 561 aa9.81□□□□□ -0.84
CBX1P3-201ENST00000413296 SPDYE4A6NLX3 237 aa9.78□□□□□ -0.84
CBX1P3-201ENST00000413296 HOXD11P31277 338 aaPredicted RBP9.77□□□□□ -0.85
CBX1P3-201ENST00000413296 ATF5Q9Y2D1 282 aaPredicted RBP9.77□□□□□ -0.85
CBX1P3-201ENST00000413296 PROM2Q8N271 834 aa9.76□□□□□ -0.85
CBX1P3-201ENST00000413296 RGL2O15211 777 aa9.73□□□□□ -0.85
CBX1P3-201ENST00000413296 BRPF1P55201 1214 aaPredicted RBP9.72□□□□□ -0.85
CBX1P3-201ENST00000413296 SPOCK2Q92563 424 aa9.69□□□□□ -0.86
CBX1P3-201ENST00000413296 CCDC9Q9Y3X0 531 aaKnown RBP9.69□□□□□ -0.86
CBX1P3-201ENST00000413296 CHGAP10645 457 aaKnown RBP9.68□□□□□ -0.86
CBX1P3-201ENST00000413296 EIF5BO60841 1220 aaKnown RBP9.62□□□□□ -0.87
CBX1P3-201ENST00000413296 ZBTB7CA1YPR0 619 aa9.61□□□□□ -0.87
CBX1P3-201ENST00000413296 ZMYND15Q9H091 742 aa9.61□□□□□ -0.87
CBX1P3-201ENST00000413296 RSPH6AQ9H0K4 717 aa9.61□□□□□ -0.87
CBX1P3-201ENST00000413296 NEUROD2Q15784 382 aa9.59□□□□□ -0.87
CBX1P3-201ENST00000413296 LOC105371045A0A1W2PR82 267 aa9.58□□□□□ -0.88
CBX1P3-201ENST00000413296 ARID3AQ99856 593 aa9.57□□□□□ -0.88
CBX1P3-201ENST00000413296 LMOD2Q6P5Q4 547 aa9.56□□□□□ -0.88
CBX1P3-201ENST00000413296 TRHP20396 242 aaPredicted RBP9.54□□□□□ -0.88
CBX1P3-201ENST00000413296 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.52□□□□□ -0.89
CBX1P3-201ENST00000413296 PDIA4P13667 645 aaKnown RBP9.51□□□□□ -0.89
CBX1P3-201ENST00000413296 HS6ST3Q8IZP7 471 aa9.5□□□□□ -0.89
CBX1P3-201ENST00000413296 SHROOM4Q9ULL8 1493 aa9.49□□□□□ -0.89
CBX1P3-201ENST00000413296 SAMD1Q6SPF0 538 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms