RNA–Protein interactions for RNA: ENST00000397537.2

SMCO1-201, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO1, Length 1,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-201ENST00000397537 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
SMCO1-201ENST00000397537 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
SMCO1-201ENST00000397537 PHF23Q9BUL5 403 aaPredicted RBP15.57■□□□□ 0.08
SMCO1-201ENST00000397537 SENP3Q9H4L4 574 aaPredicted RBP15.32■□□□□ 0.04
SMCO1-201ENST00000397537 SLC24A1O60721 1099 aa15.2■□□□□ 0.02
SMCO1-201ENST00000397537 POTEDQ86YR6 584 aa15.15■□□□□ 0.02
SMCO1-201ENST00000397537 EHMT2Q96KQ7 1210 aa14.99□□□□□ -0.01
SMCO1-201ENST00000397537 PLPPR3Q6T4P5 718 aa14.44□□□□□ -0.1
SMCO1-201ENST00000397537 FOXD1Q16676 465 aa14.27□□□□□ -0.12
SMCO1-201ENST00000397537 KCNA4P22459 653 aa14.18□□□□□ -0.14
SMCO1-201ENST00000397537 CSRNP3Q8WYN3 585 aa14.17□□□□□ -0.14
SMCO1-201ENST00000397537 RTN4Q9NQC3 1192 aaKnown RBP14.14□□□□□ -0.15
SMCO1-201ENST00000397537 AMER1Q5JTC6 1135 aaPredicted RBP13.94□□□□□ -0.18
SMCO1-201ENST00000397537 MSH5O43196 834 aa13.9□□□□□ -0.18
SMCO1-201ENST00000397537 ADRA2BP18089 450 aa13.69□□□□□ -0.22
SMCO1-201ENST00000397537 PPP6R1Q9UPN7 881 aa13.67□□□□□ -0.22
SMCO1-201ENST00000397537 SLC4A1APQ9BWU0 796 aaKnown RBP13.66□□□□□ -0.22
SMCO1-201ENST00000397537 NCBP3Q53F19 620 aaKnown RBP13.63□□□□□ -0.23
SMCO1-201ENST00000397537 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
SMCO1-201ENST00000397537 PIAS4Q8N2W9 510 aaPredicted RBP13.24□□□□□ -0.29
SMCO1-201ENST00000397537 PRKCSHP14314 528 aaPredicted RBP13.23□□□□□ -0.29
SMCO1-201ENST00000397537 ZBTB22O15209 634 aa13.15□□□□□ -0.3
SMCO1-201ENST00000397537 TAOK2Q9UL54 1235 aa12.96□□□□□ -0.33
SMCO1-201ENST00000397537 BCANQ96GW7 911 aa12.89□□□□□ -0.35
SMCO1-201ENST00000397537 ARXQ96QS3 562 aa12.86□□□□□ -0.35
SMCO1-201ENST00000397537 PLCB2Q00722 1185 aa12.83□□□□□ -0.35
SMCO1-201ENST00000397537 TIMELESSQ9UNS1 1208 aa12.83□□□□□ -0.36
SMCO1-201ENST00000397537 PPP4R3CPQ6ZMV5 832 aa12.79□□□□□ -0.36
SMCO1-201ENST00000397537 NPM3O75607 178 aaKnown RBP12.76□□□□□ -0.37
SMCO1-201ENST00000397537 TPRNQ4KMQ1 711 aa12.72□□□□□ -0.37
SMCO1-201ENST00000397537 TULP1O00294 542 aaPredicted RBP12.67□□□□□ -0.38
SMCO1-201ENST00000397537 FKBP8Q14318 412 aa12.67□□□□□ -0.38
SMCO1-201ENST00000397537 HAP1P54257 671 aaPredicted RBP12.65□□□□□ -0.39
SMCO1-201ENST00000397537 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
SMCO1-201ENST00000397537 CACNB1Q02641 598 aaPredicted RBP12.46□□□□□ -0.41
SMCO1-201ENST00000397537 HOMEZQ8IX15 550 aa12.46□□□□□ -0.41
SMCO1-201ENST00000397537 VSIG10Q8N0Z9 540 aa12.45□□□□□ -0.42
SMCO1-201ENST00000397537 SCAF1Q9H7N4 1312 aaKnown RBP12.44□□□□□ -0.42
SMCO1-201ENST00000397537 GTF3C3Q9Y5Q9 886 aa12.4□□□□□ -0.42
SMCO1-201ENST00000397537 MAPK8IP2Q13387 824 aaPredicted RBP12.34□□□□□ -0.43
SMCO1-201ENST00000397537 CNKSR2Q8WXI2 1034 aa12.34□□□□□ -0.43
SMCO1-201ENST00000397537 KDM2AQ9Y2K7 1162 aa12.27□□□□□ -0.44
SMCO1-201ENST00000397537 ERICH6Q7L0X2 663 aa12.25□□□□□ -0.45
SMCO1-201ENST00000397537 RANGAP1P46060 587 aaPredicted RBP12.22□□□□□ -0.45
SMCO1-201ENST00000397537 FBLN2P98095 1184 aa12.16□□□□□ -0.46
SMCO1-201ENST00000397537 TMEM132AQ24JP5 1023 aa12.14□□□□□ -0.47
SMCO1-201ENST00000397537 PODXL2Q9NZ53 605 aa12.09□□□□□ -0.47
SMCO1-201ENST00000397537 DCAF8L2P0C7V8 631 aa12.07□□□□□ -0.48
SMCO1-201ENST00000397537 DMRT2Q9Y5R5 561 aa12.04□□□□□ -0.48
SMCO1-201ENST00000397537 RNF216Q9NWF9 866 aaPredicted RBP12.02□□□□□ -0.49
SMCO1-201ENST00000397537 DNAJC5BQ9UF47 199 aa12.02□□□□□ -0.49
SMCO1-201ENST00000397537 C14orf37Q86TY3 774 aa12.01□□□□□ -0.49
SMCO1-201ENST00000397537 APLP2Q06481 763 aa11.94□□□□□ -0.5
SMCO1-201ENST00000397537 KLHL34Q8N239 644 aa11.93□□□□□ -0.5
SMCO1-201ENST00000397537 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
SMCO1-201ENST00000397537 HOXD11P31277 338 aaPredicted RBP11.89□□□□□ -0.51
SMCO1-201ENST00000397537 PAXIP1Q6ZW49 1069 aaPredicted RBP11.83□□□□□ -0.52
SMCO1-201ENST00000397537 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.81□□□□□ -0.52
SMCO1-201ENST00000397537 BBXQ8WY36 941 aaPredicted RBP11.79□□□□□ -0.52
SMCO1-201ENST00000397537 PKD2Q13563 968 aa11.79□□□□□ -0.52
SMCO1-201ENST00000397537 NPM2Q86SE8 214 aaKnown RBP11.79□□□□□ -0.52
SMCO1-201ENST00000397537 CFAP44Q96MT7 982 aa11.79□□□□□ -0.52
SMCO1-201ENST00000397537 NBR1Q14596 966 aa11.76□□□□□ -0.53
SMCO1-201ENST00000397537 SUPT5HO00267 1087 aaKnown RBP11.75□□□□□ -0.53
SMCO1-201ENST00000397537 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
SMCO1-201ENST00000397537 NPM1P06748 294 aaKnown RBP eCLIP11.72□□□□□ -0.53
SMCO1-201ENST00000397537 SLC4A2P04920 1241 aa11.7□□□□□ -0.54
SMCO1-201ENST00000397537 TRIM26Q12899 539 aaPredicted RBP11.7□□□□□ -0.54
SMCO1-201ENST00000397537 POTEHQ6S545 545 aa11.7□□□□□ -0.54
SMCO1-201ENST00000397537 PELP1Q8IZL8 1130 aaKnown RBP11.69□□□□□ -0.54
SMCO1-201ENST00000397537 RNF39Q9H2S5 420 aa11.69□□□□□ -0.54
SMCO1-201ENST00000397537 FBXO3Q9UK99 471 aa11.67□□□□□ -0.54
SMCO1-201ENST00000397537 TTBK1Q5TCY1 1321 aaPredicted RBP11.63□□□□□ -0.55
SMCO1-201ENST00000397537 UBTFP17480 764 aaKnown RBP11.63□□□□□ -0.55
SMCO1-201ENST00000397537 IFNLR1Q8IU57 520 aaPredicted RBP11.62□□□□□ -0.55
SMCO1-201ENST00000397537 MYCNP04198 464 aaPredicted RBP11.6□□□□□ -0.55
SMCO1-201ENST00000397537 DCAF8L1A6NGE4 600 aa11.6□□□□□ -0.55
SMCO1-201ENST00000397537 VASPP50552 380 aaPredicted RBP11.6□□□□□ -0.55
SMCO1-201ENST00000397537 DNAJC5Q9H3Z4 198 aa11.6□□□□□ -0.55
SMCO1-201ENST00000397537 HRCP23327 699 aa11.58□□□□□ -0.56
SMCO1-201ENST00000397537 SPRYD3Q8NCJ5 442 aa11.56□□□□□ -0.56
SMCO1-201ENST00000397537 C1QBPQ07021 282 aaKnown RBP11.53□□□□□ -0.56
SMCO1-201ENST00000397537 MYT1Q01538 1121 aa11.49□□□□□ -0.57
SMCO1-201ENST00000397537 NISCHQ9Y2I1 1504 aa11.48□□□□□ -0.57
SMCO1-201ENST00000397537 ABCC9O60706 1549 aa11.41□□□□□ -0.58
SMCO1-201ENST00000397537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.39□□□□□ -0.59
SMCO1-201ENST00000397537 ATF5Q9Y2D1 282 aaPredicted RBP11.39□□□□□ -0.59
SMCO1-201ENST00000397537 ECM2O94769 699 aaPredicted RBP11.36□□□□□ -0.59
SMCO1-201ENST00000397537 PROM2Q8N271 834 aa11.32□□□□□ -0.6
SMCO1-201ENST00000397537 RGL2O15211 777 aa11.3□□□□□ -0.6
SMCO1-201ENST00000397537 BRPF1P55201 1214 aaPredicted RBP11.3□□□□□ -0.6
SMCO1-201ENST00000397537 SPDYE4A6NLX3 237 aa11.26□□□□□ -0.61
SMCO1-201ENST00000397537 LOC105371045A0A1W2PR82 267 aa11.24□□□□□ -0.61
SMCO1-201ENST00000397537 TRHP20396 242 aaPredicted RBP11.23□□□□□ -0.61
SMCO1-201ENST00000397537 U3KPZ7 1027 aaPredicted RBP11.22□□□□□ -0.61
SMCO1-201ENST00000397537 CHGAP10645 457 aaKnown RBP11.18□□□□□ -0.62
SMCO1-201ENST00000397537 EIF5BO60841 1220 aaKnown RBP11.16□□□□□ -0.62
SMCO1-201ENST00000397537 CCDC9Q9Y3X0 531 aaKnown RBP11.15□□□□□ -0.62
SMCO1-201ENST00000397537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.13□□□□□ -0.63
SMCO1-201ENST00000397537 HNRNPUL2Q1KMD3 747 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms