RNA–Protein interactions for RNA: ENST00000388948.7

LRRK1-201, Transcript of leucine rich repeat kinase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LRRK1, Length 7,671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-201ENST00000388948 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
LRRK1-201ENST00000388948 SUPT5HO00267 1087 aaKnown RBP24.51■■□□□ 1.51
LRRK1-201ENST00000388948 EHMT2Q96KQ7 1210 aa24.11■■□□□ 1.45
LRRK1-201ENST00000388948 SHROOM4Q9ULL8 1493 aa24.1■■□□□ 1.45
LRRK1-201ENST00000388948 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
LRRK1-201ENST00000388948 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
LRRK1-201ENST00000388948 APLP2Q06481 763 aa23.69■■□□□ 1.38
LRRK1-201ENST00000388948 RANGAP1P46060 587 aaPredicted RBP23.22■■□□□ 1.31
LRRK1-201ENST00000388948 TTBK1Q5TCY1 1321 aaPredicted RBP23.2■■□□□ 1.3
LRRK1-201ENST00000388948 ATP1B4Q9UN42 357 aaPredicted RBP23.17■■□□□ 1.3
LRRK1-201ENST00000388948 PELP1Q8IZL8 1130 aaKnown RBP23.08■■□□□ 1.29
LRRK1-201ENST00000388948 TRIM41Q8WV44 630 aa22.68■■□□□ 1.22
LRRK1-201ENST00000388948 UBTFP17480 764 aaKnown RBP22.67■■□□□ 1.22
LRRK1-201ENST00000388948 MYT1LQ9UL68 1186 aa22.63■■□□□ 1.21
LRRK1-201ENST00000388948 PCGF6Q9BYE7 350 aa22.63■■□□□ 1.21
LRRK1-201ENST00000388948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.43■■□□□ 1.18
LRRK1-201ENST00000388948 HNRNPUL2Q1KMD3 747 aaKnown RBP22.43■■□□□ 1.18
LRRK1-201ENST00000388948 CCER1Q8TC90 406 aaPredicted RBP22.35■■□□□ 1.17
LRRK1-201ENST00000388948 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
LRRK1-201ENST00000388948 ERICH6Q7L0X2 663 aa22.19■■□□□ 1.14
LRRK1-201ENST00000388948 POLR3GLQ9BT43 218 aa22.02■■□□□ 1.12
LRRK1-201ENST00000388948 ITGAEP38570 1179 aa22.01■■□□□ 1.11
LRRK1-201ENST00000388948 PPARGC1BQ86YN6 1023 aaKnown RBP22.01■■□□□ 1.11
LRRK1-201ENST00000388948 CENPBP07199 599 aaPredicted RBP22■■□□□ 1.11
LRRK1-201ENST00000388948 ZEB1P37275 1124 aaPredicted RBP21.96■■□□□ 1.11
LRRK1-201ENST00000388948 NEFLP07196 543 aa21.94■■□□□ 1.1
LRRK1-201ENST00000388948 SLC4A1APQ9BWU0 796 aaKnown RBP21.89■■□□□ 1.1
LRRK1-201ENST00000388948 YTHDC1Q96MU7 727 aaKnown RBP21.78■■□□□ 1.08
LRRK1-201ENST00000388948 CNGB1Q14028 1251 aaPredicted RBP21.76■■□□□ 1.07
LRRK1-201ENST00000388948 PABPN1Q86U42 306 aaKnown RBP eCLIP21.73■■□□□ 1.07
LRRK1-201ENST00000388948 ABCC9O60706 1549 aa21.65■■□□□ 1.06
LRRK1-201ENST00000388948 FBLN2P98095 1184 aa21.64■■□□□ 1.05
LRRK1-201ENST00000388948 DAXXQ9UER7 740 aaPredicted RBP21.51■■□□□ 1.03
LRRK1-201ENST00000388948 FAM50AQ14320 339 aaKnown RBP21.41■■□□□ 1.02
LRRK1-201ENST00000388948 BCANQ96GW7 911 aa21.39■■□□□ 1.01
LRRK1-201ENST00000388948 TRIM52Q96A61 297 aa21.38■■□□□ 1.01
LRRK1-201ENST00000388948 TRIM26Q12899 539 aaPredicted RBP21.33■■□□□ 1.01
LRRK1-201ENST00000388948 LOC105371045A0A1W2PR82 267 aa21.28■■□□□ 1
LRRK1-201ENST00000388948 SLC24A1O60721 1099 aa21.25■□□□□ 0.99
LRRK1-201ENST00000388948 CLSPNQ9HAW4 1339 aa21.19■□□□□ 0.98
LRRK1-201ENST00000388948 ZNF326Q5BKZ1 582 aaKnown RBP21.17■□□□□ 0.98
LRRK1-201ENST00000388948 ESF1Q9H501 851 aaKnown RBP21.15■□□□□ 0.98
LRRK1-201ENST00000388948 PLPPR3Q6T4P5 718 aa21.15■□□□□ 0.98
LRRK1-201ENST00000388948 ARID3CA6NKF2 412 aa21.12■□□□□ 0.97
LRRK1-201ENST00000388948 NEUROD1Q13562 356 aa21.08■□□□□ 0.96
LRRK1-201ENST00000388948 ZBTB47Q9UFB7 747 aaPredicted RBP20.99■□□□□ 0.95
LRRK1-201ENST00000388948 P3H3Q8IVL6 736 aa20.98■□□□□ 0.95
LRRK1-201ENST00000388948 NPM1P06748 294 aaKnown RBP eCLIP20.97■□□□□ 0.95
LRRK1-201ENST00000388948 ZNF777Q9ULD5 760 aaPredicted RBP20.96■□□□□ 0.95
LRRK1-201ENST00000388948 ZNF316A6NFI3 1004 aaPredicted RBP20.94■□□□□ 0.94
LRRK1-201ENST00000388948 NEFMP07197 916 aa20.93■□□□□ 0.94
LRRK1-201ENST00000388948 BCL11AQ9H165 835 aa20.93■□□□□ 0.94
LRRK1-201ENST00000388948 STAG3Q9UJ98 1225 aa20.93■□□□□ 0.94
LRRK1-201ENST00000388948 MYT1Q01538 1121 aa20.9■□□□□ 0.94
LRRK1-201ENST00000388948 HRCP23327 699 aa20.9■□□□□ 0.94
LRRK1-201ENST00000388948 CHGAP10645 457 aaKnown RBP20.81■□□□□ 0.92
LRRK1-201ENST00000388948 CDK11AQ9UQ88 783 aaPredicted RBP20.81■□□□□ 0.92
LRRK1-201ENST00000388948 CANXP27824 592 aaKnown RBP20.76■□□□□ 0.91
LRRK1-201ENST00000388948 ANP32CO43423 234 aa20.65■□□□□ 0.9
LRRK1-201ENST00000388948 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
LRRK1-201ENST00000388948 DIEXFQ68CQ4 756 aaKnown RBP20.61■□□□□ 0.89
LRRK1-201ENST00000388948 RTL5Q5HYW3 569 aaPredicted RBP20.6■□□□□ 0.89
LRRK1-201ENST00000388948 A0A0G2JS52 829 aa20.55■□□□□ 0.88
LRRK1-201ENST00000388948 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.51■□□□□ 0.87
LRRK1-201ENST00000388948 SCRIBQ14160 1630 aa20.5■□□□□ 0.87
LRRK1-201ENST00000388948 CHMP7Q8WUX9 453 aaPredicted RBP20.48■□□□□ 0.87
LRRK1-201ENST00000388948 CSRNP3Q8WYN3 585 aa20.48■□□□□ 0.87
LRRK1-201ENST00000388948 PLEKHG5O94827 1062 aa20.42■□□□□ 0.86
LRRK1-201ENST00000388948 C14orf37Q86TY3 774 aa20.38■□□□□ 0.85
LRRK1-201ENST00000388948 SENP3Q9H4L4 574 aaPredicted RBP20.35■□□□□ 0.85
LRRK1-201ENST00000388948 ARID4BQ4LE39 1312 aaPredicted RBP20.34■□□□□ 0.85
LRRK1-201ENST00000388948 ZBTB7CA1YPR0 619 aa20.33■□□□□ 0.84
LRRK1-201ENST00000388948 NPM2Q86SE8 214 aaKnown RBP20.31■□□□□ 0.84
LRRK1-201ENST00000388948 TSPY4P0CV99 314 aa20.31■□□□□ 0.84
LRRK1-201ENST00000388948 TSPY10P0CW01 314 aa20.31■□□□□ 0.84
LRRK1-201ENST00000388948 CHIC2Q9UKJ5 165 aa20.3■□□□□ 0.84
LRRK1-201ENST00000388948 KCNH8Q96L42 1107 aa20.29■□□□□ 0.84
LRRK1-201ENST00000388948 PPP1R15AO75807 674 aaPredicted RBP20.28■□□□□ 0.84
LRRK1-201ENST00000388948 HAP1P54257 671 aaPredicted RBP20.26■□□□□ 0.83
LRRK1-201ENST00000388948 TONSLQ96HA7 1378 aa20.23■□□□□ 0.83
LRRK1-201ENST00000388948 KDM2AQ9Y2K7 1162 aa20.19■□□□□ 0.82
LRRK1-201ENST00000388948 TRHP20396 242 aaPredicted RBP20.17■□□□□ 0.82
LRRK1-201ENST00000388948 SALL2Q9Y467 1007 aaPredicted RBP20.14■□□□□ 0.81
LRRK1-201ENST00000388948 HSP90AA1P07900 732 aaKnown RBP20.12■□□□□ 0.81
LRRK1-201ENST00000388948 MTUS2Q5JR59 1369 aa20.1■□□□□ 0.81
LRRK1-201ENST00000388948 ERCC6Q03468 1493 aa20.06■□□□□ 0.8
LRRK1-201ENST00000388948 PLEKHD1A6NEE1 506 aa20.04■□□□□ 0.8
LRRK1-201ENST00000388948 WDR43Q15061 677 aaKnown RBP eCLIP20.04■□□□□ 0.8
LRRK1-201ENST00000388948 ARXQ96QS3 562 aa20.03■□□□□ 0.8
LRRK1-201ENST00000388948 FAM9BQ8IZU0 186 aa20.02■□□□□ 0.79
LRRK1-201ENST00000388948 TMC1Q8TDI8 760 aa20■□□□□ 0.79
LRRK1-201ENST00000388948 LMOD2Q6P5Q4 547 aa19.98■□□□□ 0.79
LRRK1-201ENST00000388948 UPF2Q9HAU5 1272 aaKnown RBP19.97■□□□□ 0.79
LRRK1-201ENST00000388948 ANP32AP39687 249 aaKnown RBP19.96■□□□□ 0.79
LRRK1-201ENST00000388948 RB1CC1Q8TDY2 1594 aa19.94■□□□□ 0.78
LRRK1-201ENST00000388948 HNRNPUQ00839 825 aaKnown RBP eCLIP19.91■□□□□ 0.78
LRRK1-201ENST00000388948 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.9■□□□□ 0.78
LRRK1-201ENST00000388948 RRP7BPQ9NSQ0 103 aa19.9■□□□□ 0.78
LRRK1-201ENST00000388948 DDX10Q13206 875 aaKnown RBP19.9■□□□□ 0.78
LRRK1-201ENST00000388948 NPHP1O15259 732 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms