RNA–Protein interactions for RNA: ENST00000351677.6

PTPN11-201, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN11, Length 6,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-201ENST00000351677 DCAF8L2P0C7V8 631 aa27.95■■■□□ 2.07
PTPN11-201ENST00000351677 NISCHQ9Y2I1 1504 aa27.11■■□□□ 1.93
PTPN11-201ENST00000351677 SUPT5HO00267 1087 aaKnown RBP26.78■■□□□ 1.88
PTPN11-201ENST00000351677 SHROOM4Q9ULL8 1493 aa26.43■■□□□ 1.82
PTPN11-201ENST00000351677 EHMT2Q96KQ7 1210 aa25.93■■□□□ 1.74
PTPN11-201ENST00000351677 FAM9AQ8IZU1 332 aaPredicted RBP25.26■■□□□ 1.63
PTPN11-201ENST00000351677 PCGF6Q9BYE7 350 aa25.1■■□□□ 1.61
PTPN11-201ENST00000351677 APLP2Q06481 763 aa25.09■■□□□ 1.61
PTPN11-201ENST00000351677 TTBK1Q5TCY1 1321 aaPredicted RBP25.05■■□□□ 1.6
PTPN11-201ENST00000351677 PELP1Q8IZL8 1130 aaKnown RBP24.81■■□□□ 1.56
PTPN11-201ENST00000351677 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
PTPN11-201ENST00000351677 RANGAP1P46060 587 aaPredicted RBP24.71■■□□□ 1.55
PTPN11-201ENST00000351677 CCER1Q8TC90 406 aaPredicted RBP24.49■■□□□ 1.51
PTPN11-201ENST00000351677 ZEB1P37275 1124 aaPredicted RBP24.43■■□□□ 1.5
PTPN11-201ENST00000351677 UBTFP17480 764 aaKnown RBP24.38■■□□□ 1.49
PTPN11-201ENST00000351677 ATP1B4Q9UN42 357 aaPredicted RBP24.34■■□□□ 1.49
PTPN11-201ENST00000351677 CENPBP07199 599 aaPredicted RBP24.29■■□□□ 1.48
PTPN11-201ENST00000351677 PPARGC1BQ86YN6 1023 aaKnown RBP24.25■■□□□ 1.47
PTPN11-201ENST00000351677 YTHDC1Q96MU7 727 aaKnown RBP24.01■■□□□ 1.43
PTPN11-201ENST00000351677 TRIM26Q12899 539 aaPredicted RBP23.98■■□□□ 1.43
PTPN11-201ENST00000351677 LOC105371045A0A1W2PR82 267 aa23.96■■□□□ 1.43
PTPN11-201ENST00000351677 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
PTPN11-201ENST00000351677 ERICH6Q7L0X2 663 aa23.87■■□□□ 1.41
PTPN11-201ENST00000351677 HRCP23327 699 aa23.82■■□□□ 1.4
PTPN11-201ENST00000351677 NEFLP07196 543 aa23.7■■□□□ 1.38
PTPN11-201ENST00000351677 ITGAEP38570 1179 aa23.67■■□□□ 1.38
PTPN11-201ENST00000351677 HNRNPUL2Q1KMD3 747 aaKnown RBP23.57■■□□□ 1.36
PTPN11-201ENST00000351677 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.41■■□□□ 1.34
PTPN11-201ENST00000351677 POLR3GLQ9BT43 218 aa23.34■■□□□ 1.33
PTPN11-201ENST00000351677 ABCC9O60706 1549 aa23.22■■□□□ 1.31
PTPN11-201ENST00000351677 CNGB1Q14028 1251 aaPredicted RBP23.22■■□□□ 1.31
PTPN11-201ENST00000351677 MYT1LQ9UL68 1186 aa23.21■■□□□ 1.31
PTPN11-201ENST00000351677 PABPN1Q86U42 306 aaKnown RBP eCLIP23.2■■□□□ 1.3
PTPN11-201ENST00000351677 DIEXFQ68CQ4 756 aaKnown RBP23.14■■□□□ 1.29
PTPN11-201ENST00000351677 MYT1Q01538 1121 aa23.07■■□□□ 1.28
PTPN11-201ENST00000351677 FAM50AQ14320 339 aaKnown RBP23.04■■□□□ 1.28
PTPN11-201ENST00000351677 NEUROD1Q13562 356 aa22.89■■□□□ 1.25
PTPN11-201ENST00000351677 DAXXQ9UER7 740 aaPredicted RBP22.88■■□□□ 1.25
PTPN11-201ENST00000351677 TRIM52Q96A61 297 aa22.84■■□□□ 1.25
PTPN11-201ENST00000351677 SLC4A1APQ9BWU0 796 aaKnown RBP22.77■■□□□ 1.24
PTPN11-201ENST00000351677 GTF3C3Q9Y5Q9 886 aa22.69■■□□□ 1.22
PTPN11-201ENST00000351677 BCANQ96GW7 911 aa22.65■■□□□ 1.22
PTPN11-201ENST00000351677 CSRNP3Q8WYN3 585 aa22.61■■□□□ 1.21
PTPN11-201ENST00000351677 ZNF316A6NFI3 1004 aaPredicted RBP22.61■■□□□ 1.21
PTPN11-201ENST00000351677 ZNF326Q5BKZ1 582 aaKnown RBP22.6■■□□□ 1.21
PTPN11-201ENST00000351677 P3H3Q8IVL6 736 aa22.59■■□□□ 1.21
PTPN11-201ENST00000351677 ANP32CO43423 234 aa22.55■■□□□ 1.2
PTPN11-201ENST00000351677 FBLN2P98095 1184 aa22.53■■□□□ 1.2
PTPN11-201ENST00000351677 CLSPNQ9HAW4 1339 aa22.51■■□□□ 1.19
PTPN11-201ENST00000351677 SCRIBQ14160 1630 aa22.51■■□□□ 1.19
PTPN11-201ENST00000351677 ARID3CA6NKF2 412 aa22.49■■□□□ 1.19
PTPN11-201ENST00000351677 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
PTPN11-201ENST00000351677 RTL5Q5HYW3 569 aaPredicted RBP22.42■■□□□ 1.18
PTPN11-201ENST00000351677 ACIN1Q9UKV3 1341 aaKnown RBP22.36■■□□□ 1.17
PTPN11-201ENST00000351677 DCAF1Q9Y4B6 1507 aa22.28■■□□□ 1.16
PTPN11-201ENST00000351677 CDK11AQ9UQ88 783 aaPredicted RBP22.28■■□□□ 1.16
PTPN11-201ENST00000351677 ZNF777Q9ULD5 760 aaPredicted RBP22.25■■□□□ 1.15
PTPN11-201ENST00000351677 CANXP27824 592 aaKnown RBP22.06■■□□□ 1.12
PTPN11-201ENST00000351677 TONSLQ96HA7 1378 aa22.06■■□□□ 1.12
PTPN11-201ENST00000351677 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
PTPN11-201ENST00000351677 DDX10Q13206 875 aaKnown RBP22.04■■□□□ 1.12
PTPN11-201ENST00000351677 BCL11AQ9H165 835 aa22.04■■□□□ 1.12
PTPN11-201ENST00000351677 CCDC180Q9P1Z9 1646 aa22.04■■□□□ 1.12
PTPN11-201ENST00000351677 FKBP8Q14318 412 aa22■■□□□ 1.11
PTPN11-201ENST00000351677 ZBTB47Q9UFB7 747 aaPredicted RBP21.98■■□□□ 1.11
PTPN11-201ENST00000351677 CHIC2Q9UKJ5 165 aa21.97■■□□□ 1.11
PTPN11-201ENST00000351677 SLC24A1O60721 1099 aa21.94■■□□□ 1.1
PTPN11-201ENST00000351677 HNRNPUQ00839 825 aaKnown RBP eCLIP21.94■■□□□ 1.1
PTPN11-201ENST00000351677 FAM9BQ8IZU0 186 aa21.91■■□□□ 1.1
PTPN11-201ENST00000351677 NPM2Q86SE8 214 aaKnown RBP21.89■■□□□ 1.09
PTPN11-201ENST00000351677 NEFMP07197 916 aa21.87■■□□□ 1.09
PTPN11-201ENST00000351677 ANP32AP39687 249 aaKnown RBP21.87■■□□□ 1.09
PTPN11-201ENST00000351677 CLIP1P30622 1438 aa21.85■■□□□ 1.09
PTPN11-201ENST00000351677 RSF1Q96T23 1441 aaPredicted RBP21.84■■□□□ 1.09
PTPN11-201ENST00000351677 CHGAP10645 457 aaKnown RBP21.82■■□□□ 1.08
PTPN11-201ENST00000351677 MIER1Q8N108 512 aa21.82■■□□□ 1.08
PTPN11-201ENST00000351677 SALL2Q9Y467 1007 aaPredicted RBP21.82■■□□□ 1.08
PTPN11-201ENST00000351677 HIRIP3Q9BW71 556 aaPredicted RBP21.81■■□□□ 1.08
PTPN11-201ENST00000351677 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.089e-7■■□□□ 14.4
PTPN11-201ENST00000351677 MTUS2Q5JR59 1369 aa21.76■■□□□ 1.07
PTPN11-201ENST00000351677 CEP162Q5TB80 1403 aa21.74■■□□□ 1.07
PTPN11-201ENST00000351677 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
PTPN11-201ENST00000351677 KDM2AQ9Y2K7 1162 aa21.71■■□□□ 1.07
PTPN11-201ENST00000351677 TMC1Q8TDI8 760 aa21.69■■□□□ 1.06
PTPN11-201ENST00000351677 GOLGA3Q08378 1498 aa21.68■■□□□ 1.06
PTPN11-201ENST00000351677 MRS2Q9HD23 443 aa21.66■■□□□ 1.06
PTPN11-201ENST00000351677 RB1CC1Q8TDY2 1594 aa21.66■■□□□ 1.06
PTPN11-201ENST00000351677 RRP7BPQ9NSQ0 103 aa21.66■■□□□ 1.06
PTPN11-201ENST00000351677 STAG3Q9UJ98 1225 aa21.64■■□□□ 1.06
PTPN11-201ENST00000351677 TSPY4P0CV99 314 aa21.63■■□□□ 1.05
PTPN11-201ENST00000351677 TSPY10P0CW01 314 aa21.63■■□□□ 1.05
PTPN11-201ENST00000351677 IRX6P78412 446 aaPredicted RBP21.63■■□□□ 1.05
PTPN11-201ENST00000351677 ESF1Q9H501 851 aaKnown RBP21.61■■□□□ 1.05
PTPN11-201ENST00000351677 EEA1Q15075 1411 aa21.6■■□□□ 1.05
PTPN11-201ENST00000351677 CCDC136Q96JN2 1154 aa21.6■■□□□ 1.05
PTPN11-201ENST00000351677 WRNQ14191 1432 aaPredicted RBP eCLIP21.59■■□□□ 1.05
PTPN11-201ENST00000351677 CHMP7Q8WUX9 453 aaPredicted RBP21.58■■□□□ 1.05
PTPN11-201ENST00000351677 PLPPR3Q6T4P5 718 aa21.58■■□□□ 1.04
PTPN11-201ENST00000351677 NPM1P06748 294 aaKnown RBP eCLIP21.57■■□□□ 1.04
PTPN11-201ENST00000351677 EIF4G2P78344 907 aaKnown RBP eCLIP21.53■■□□□ 1.043e-6■■■■□ 24.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms