RNA–Protein interactions for RNA: ENST00000351677.6

PTPN11-201, Transcript of protein tyrosine phosphatase, non-receptor type 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN11, Length 6,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN11-201ENST00000351677 PABPC4Q13310 644 aaKnown RBP eCLIP17.6■□□□□ 0.411e-94■■■■■ 156.1
PTPN11-201ENST00000351677 SF3B1O75533 1304 aaKnown RBP eCLIP16.15■□□□□ 0.184e-6■■■■■ 89
PTPN11-201ENST00000351677 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.66■□□□□ 0.582e-7■■■■■ 66.1
PTPN11-201ENST00000351677 UPF1Q92900 1129 aaKnown RBP eCLIP15.93■□□□□ 0.142e-9■■■■■ 41.5
PTPN11-201ENST00000351677 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.39■□□□□ 0.053e-12■■■■■ 35.8
PTPN11-201ENST00000351677 PUM1Q14671 1186 aaKnown RBP eCLIP15.5■□□□□ 0.071e-6■■■■■ 34.5
PTPN11-201ENST00000351677 DDX3XO00571 662 aaKnown RBP eCLIP16.61■□□□□ 0.254e-15■■■■■ 27.5
PTPN11-201ENST00000351677 HNRNPLP14866 589 aaKnown RBP eCLIP16.19■□□□□ 0.185e-16■■■■■ 27.4
PTPN11-201ENST00000351677 SF3B4Q15427 424 aaKnown RBP eCLIP14.65□□□□□ -0.065e-6■■■■□ 26.7
PTPN11-201ENST00000351677 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.69□□□□□ -0.381e-13■■■■□ 25.4
PTPN11-201ENST00000351677 EIF4G2P78344 907 aaKnown RBP eCLIP21.53■■□□□ 1.043e-6■■■■□ 24.2
PTPN11-201ENST00000351677 RBFOX2O43251 390 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■■■■□ 22.3
PTPN11-201ENST00000351677 AQRO60306 1485 aaKnown RBP eCLIP19.91■□□□□ 0.783e-6■■■■□ 22.1
PTPN11-201ENST00000351677 QKIQ96PU8 341 aaKnown RBP eCLIP16.08■□□□□ 0.166e-6■■■■□ 20.5
PTPN11-201ENST00000351677 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.36■□□□□ 0.058e-8■■■■□ 20.5
PTPN11-201ENST00000351677 FXR2P51116 673 aaKnown RBP eCLIP16.97■□□□□ 0.312e-9■■■■□ 19.4
PTPN11-201ENST00000351677 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.23■□□□□ 0.198e-6■■■□□ 18.6
PTPN11-201ENST00000351677 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18■□□□□ 0.471e-7■■■□□ 18.4
PTPN11-201ENST00000351677 FUBP3Q96I24 572 aaKnown RBP eCLIP15.8■□□□□ 0.124e-7■■■□□ 15.2
PTPN11-201ENST00000351677 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.089e-7■■□□□ 14.4
PTPN11-201ENST00000351677 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.76■□□□□ 0.272e-7■■□□□ 14.4
PTPN11-201ENST00000351677 FMR1Q06787 632 aaKnown RBP eCLIP17.21■□□□□ 0.354e-7■■□□□ 14.1
PTPN11-201ENST00000351677 XRCC6P12956 609 aaKnown RBP eCLIP18.51■□□□□ 0.558e-6■■□□□ 12.6
PTPN11-201ENST00000351677 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.73■□□□□ 0.437e-7■■□□□ 12.5
PTPN11-201ENST00000351677 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.31■□□□□ 0.047e-7■■□□□ 12.2
PTPN11-201ENST00000351677 KHSRPQ92945 711 aaKnown RBP eCLIP15.14■□□□□ 0.013e-6■■□□□ 11.4
PTPN11-201ENST00000351677 YBX3P16989 372 aaKnown RBP eCLIP16.41■□□□□ 0.226e-7■□□□□ 11.3
PTPN11-201ENST00000351677 HNRNPCP07910 306 aaKnown RBP eCLIP16.47■□□□□ 0.234e-6■□□□□ 11.1
PTPN11-201ENST00000351677 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.28■□□□□ 0.522e-7■□□□□ 10.1
PTPN11-201ENST00000351677 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.14■□□□□ 0.331e-6■□□□□ 8.5
Retrieved 30 of 30 RNA–protein pairs in 8.4 ms